Wall clock time and date at job start Wed Apr 1 2020 03:47:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53008 * 110.63805 * 2 1
4 4 N 1.46499 * 109.47219 * 56.85780 * 3 2 1
5 5 C 1.36938 * 119.99899 * 180.02562 * 4 3 2
6 6 H 1.07995 * 119.99860 * 359.97438 * 5 4 3
7 7 C 1.38811 * 119.99794 * 180.02562 * 5 4 3
8 8 N 1.31615 * 120.00196 * 359.97438 * 7 5 4
9 9 Si 1.86795 * 120.00003 * 180.02562 * 7 5 4
10 10 H 1.48501 * 109.47275 * 89.99625 * 9 7 5
11 11 H 1.48499 * 109.47602 * 209.99827 * 9 7 5
12 12 H 1.48508 * 109.47175 * 329.99849 * 9 7 5
13 13 C 1.55153 * 110.87753 * 123.24529 * 2 1 3
14 14 C 1.55125 * 101.48547 * 82.76954 * 13 2 1
15 15 N 1.47424 * 104.72200 * 37.29463 * 14 13 2
16 16 C 1.34775 * 125.64670 * 155.81743 * 15 14 13
17 17 O 1.21279 * 120.00103 * 4.71555 * 16 15 14
18 18 C 1.50698 * 120.00231 * 184.71955 * 16 15 14
19 19 H 1.09004 * 109.62907 * 25.84807 * 18 16 15
20 20 C 1.53307 * 109.63624 * 146.24414 * 18 16 15
21 21 C 1.52815 * 108.51526 * 189.47058 * 20 18 16
22 22 C 1.50443 * 110.43750 * 308.91594 * 21 20 18
23 23 N 1.32897 * 118.53260 * 198.00761 * 22 21 20
24 24 C 1.31605 * 121.06031 * 180.59185 * 23 22 21
25 25 N 1.31809 * 121.67001 * 359.44876 * 24 23 22
26 26 C 1.32201 * 120.64455 * 0.16084 * 25 24 23
27 27 C 1.37771 * 122.58092 * 17.83943 * 22 21 20
28 28 C 1.50338 * 122.79957 * 359.23935 * 27 22 21
29 29 C 1.47016 * 108.70421 * 335.55756 * 15 14 13
30 30 H 1.09002 * 109.46907 * 183.14365 * 1 2 3
31 31 H 1.09002 * 109.47603 * 303.13944 * 1 2 3
32 32 H 1.08998 * 109.47621 * 63.14294 * 1 2 3
33 33 H 1.09005 * 109.47008 * 176.86085 * 3 2 1
34 34 H 1.09009 * 109.46697 * 296.85993 * 3 2 1
35 35 H 0.97000 * 120.00204 * 0.02562 * 4 3 2
36 36 H 0.97000 * 120.00476 * 180.02562 * 8 7 5
37 37 H 1.09005 * 111.00810 * 201.00924 * 13 2 1
38 38 H 1.08998 * 111.00227 * 324.82337 * 13 2 1
39 39 H 1.09000 * 110.49907 * 278.45726 * 14 13 2
40 40 H 1.08998 * 110.34575 * 156.06187 * 14 13 2
41 41 H 1.08999 * 109.63166 * 69.76110 * 20 18 16
42 42 H 1.08997 * 109.79402 * 309.26941 * 20 18 16
43 43 H 1.09006 * 109.30558 * 188.62034 * 21 20 18
44 44 H 1.08997 * 109.31437 * 69.21474 * 21 20 18
45 45 H 1.07996 * 119.16288 * 179.73289 * 24 23 22
46 46 H 1.07996 * 120.36293 * 180.02562 * 26 25 24
47 47 H 1.09001 * 109.30463 * 137.91256 * 28 27 22
48 48 H 1.09006 * 109.30294 * 257.30960 * 28 27 22
49 49 H 1.08997 * 109.88771 * 120.70431 * 29 15 14
50 50 H 1.08997 * 109.88076 * 241.71351 * 29 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0692 1.4319 0.0000
4 7 1.5347 2.1551 1.1565
5 6 1.8808 3.4633 1.3657
6 1 2.5481 3.9619 0.6783
7 6 1.3747 4.1484 2.4618
8 7 0.5619 3.5407 3.2997
9 14 1.8463 5.9332 2.7468
10 1 0.8732 6.8184 2.0577
11 1 1.8331 6.2223 4.2033
12 1 3.2075 6.1781 2.2059
13 6 2.0829 -0.7947 1.2124
14 6 2.0142 -2.2516 0.6840
15 7 2.3757 -2.1505 -0.7416
16 6 2.8903 -3.1434 -1.4938
17 8 3.0129 -4.2563 -1.0275
18 6 3.3135 -2.8709 -2.9142
19 1 3.5699 -1.8172 -3.0241
20 6 4.5297 -3.7362 -3.2644
21 6 5.0814 -3.2748 -4.6127
22 6 3.9815 -3.2138 -5.6373
23 7 4.3132 -3.1902 -6.9240
24 6 3.3919 -3.1254 -7.8616
25 7 2.1073 -3.0920 -7.5684
26 6 1.7024 -3.1198 -6.3102
27 6 2.6478 -3.1849 -5.2932
28 6 2.1736 -3.2285 -3.8672
29 6 2.0760 -0.7891 -1.2086
30 1 -0.3633 -1.0261 0.0564
31 1 -0.3634 0.5618 0.8605
32 1 -0.3634 0.4642 -0.9168
33 1 3.1576 1.4102 0.0563
34 1 1.7627 1.9355 -0.9169
35 1 0.9356 1.7072 1.7741
36 1 0.2079 4.0194 4.0655
37 1 3.1097 -0.5042 1.4346
38 1 1.4450 -0.6671 2.0869
39 1 1.0052 -2.6497 0.7921
40 1 2.7298 -2.8808 1.2132
41 1 4.2285 -4.7816 -3.3304
42 1 5.2959 -3.6236 -2.4974
43 1 5.8473 -3.9746 -4.9472
44 1 5.5253 -2.2855 -4.5011
45 1 3.6961 -3.1036 -8.8976
46 1 0.6486 -3.0927 -6.0752
47 1 1.3581 -2.5171 -3.7368
48 1 1.8132 -4.2314 -3.6378
49 1 2.9850 -0.3160 -1.5801
50 1 1.3271 -0.8250 -1.9997
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001569671582.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:47:05
Heat of formation + Delta-G solvation = 11.708453 kcal
Electronic energy + Delta-G solvation = -30264.516932 eV
Core-core repulsion = 26291.208010 eV
Total energy + Delta-G solvation = -3973.308923 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-41.75932 -40.42088 -38.53698 -36.84825 -34.85982 -34.42601 -32.71285 -31.87414
-31.06002 -30.17257 -29.38532 -26.75537 -25.87569 -25.38052 -24.66243 -23.43433
-22.93314 -22.48285 -20.83669 -19.22539 -18.85323 -17.99450 -17.51751 -17.21784
-17.04317 -16.22128 -15.66094 -15.21008 -15.13603 -14.58308 -14.50315 -14.28902
-14.10406 -14.02512 -13.92958 -13.80006 -13.41242 -13.20009 -13.13029 -12.65838
-12.61289 -12.45136 -12.20740 -12.11617 -11.72280 -11.56592 -11.48554 -11.32561
-11.21165 -11.07609 -10.87010 -10.76430 -10.67328 -10.39903 -10.29892 -10.04025
-9.84737 -9.69043 -9.58847 -9.53992 -8.93338 -8.69138 -6.98192 -5.82529
-3.11003 0.52880 0.67916 2.44604 2.85336 3.37618 3.39763 3.45390
3.46721 3.61963 3.83869 3.99782 4.13943 4.21908 4.31017 4.45960
4.53186 4.64010 4.76037 4.84674 4.88660 4.97694 4.98397 5.04869
5.13796 5.18829 5.28655 5.35640 5.37990 5.44927 5.49778 5.53099
5.60115 5.64381 5.67291 5.77489 5.82523 5.88421 5.97666 6.00571
6.05690 6.20752 6.28149 6.31742 6.40091 6.56887 6.61665 6.67317
6.75270 7.44178 7.64794 7.72533 8.03126 8.36535 9.48259 10.04763
10.39475 11.40285
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.014862 B = 0.002319 C = 0.002165
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1883.562328 B =12073.169470 C =12928.703200
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.077 4.077
3 C 0.169 3.831
4 N -0.728 5.728
5 C -0.240 4.240
6 H 0.070 0.930
7 C -0.012 4.012
8 N -0.933 5.933
9 Si 0.906 3.094
10 H -0.290 1.290
11 H -0.291 1.291
12 H -0.282 1.282
13 C -0.116 4.116
14 C 0.105 3.895
15 N -0.612 5.612
16 C 0.535 3.465
17 O -0.543 6.543
18 C -0.105 4.105
19 H 0.097 0.903
20 C -0.100 4.100
21 C -0.074 4.074
22 C 0.182 3.818
23 N -0.521 5.521
24 C 0.289 3.711
25 N -0.522 5.522
26 C 0.153 3.847
27 C -0.176 4.176
28 C -0.060 4.060
29 C 0.109 3.891
30 H 0.047 0.953
31 H 0.074 0.926
32 H 0.055 0.945
33 H 0.021 0.979
34 H 0.021 0.979
35 H 0.385 0.615
36 H 0.255 0.745
37 H 0.079 0.921
38 H 0.089 0.911
39 H 0.067 0.933
40 H 0.075 0.925
41 H 0.080 0.920
42 H 0.083 0.917
43 H 0.096 0.904
44 H 0.094 0.906
45 H 0.196 0.804
46 H 0.169 0.831
47 H 0.088 0.912
48 H 0.091 0.909
49 H 0.071 0.929
50 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.269 -16.097 -16.983 23.785
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.078 4.078
3 C 0.041 3.959
4 N -0.373 5.373
5 C -0.371 4.371
6 H 0.088 0.912
7 C -0.208 4.208
8 N -0.581 5.581
9 Si 0.738 3.262
10 H -0.217 1.217
11 H -0.218 1.218
12 H -0.208 1.208
13 C -0.154 4.154
14 C -0.017 4.017
15 N -0.345 5.345
16 C 0.323 3.677
17 O -0.421 6.421
18 C -0.127 4.127
19 H 0.115 0.885
20 C -0.138 4.138
21 C -0.111 4.111
22 C 0.038 3.962
23 N -0.235 5.235
24 C 0.001 3.999
25 N -0.235 5.235
26 C -0.015 4.015
27 C -0.180 4.180
28 C -0.098 4.098
29 C -0.015 4.015
30 H 0.066 0.934
31 H 0.093 0.907
32 H 0.074 0.926
33 H 0.038 0.962
34 H 0.039 0.961
35 H 0.220 0.780
36 H 0.065 0.935
37 H 0.097 0.903
38 H 0.108 0.892
39 H 0.086 0.914
40 H 0.093 0.907
41 H 0.098 0.902
42 H 0.101 0.899
43 H 0.114 0.886
44 H 0.113 0.887
45 H 0.212 0.788
46 H 0.186 0.814
47 H 0.106 0.894
48 H 0.109 0.891
49 H 0.089 0.911
50 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 4.739 -16.573 -17.763 24.752
hybrid contribution -0.327 1.068 1.123 1.584
sum 4.412 -15.505 -16.640 23.168
Atomic orbital electron populations
1.21767 0.93198 1.00843 1.03232 1.21784 0.96545 0.96165 0.93306
1.20600 0.95642 0.87869 0.91808 1.42335 1.57009 1.10697 1.27270
1.19201 1.23104 0.87836 1.06972 0.91247 1.24719 1.00051 0.98320
0.97759 1.69642 1.36258 1.36266 1.15980 0.86202 0.77944 0.85047
0.77054 1.21730 1.21780 1.20793 1.22880 1.02722 0.91877 0.97969
1.22372 1.00466 0.98379 0.80485 1.48574 1.62269 1.11892 1.11769
1.20047 0.77000 0.83562 0.87108 1.90701 1.55560 1.22058 1.73736
1.21325 0.97024 1.02565 0.91761 0.88456 1.21446 0.96357 1.00142
0.95892 1.20472 0.95172 1.03980 0.91488 1.21363 0.93024 0.89984
0.91830 1.68409 1.39677 1.14354 1.01057 1.24913 0.84190 0.91084
0.99705 1.68431 1.19453 1.14148 1.21515 1.23303 1.00588 0.90225
0.87343 1.21077 0.95019 1.03897 0.98043 1.20207 0.97392 1.03800
0.88441 1.22204 1.00254 0.81519 0.97485 0.93435 0.90716 0.92639
0.96154 0.96146 0.78015 0.93480 0.90280 0.89247 0.91446 0.90696
0.90158 0.89863 0.88568 0.88746 0.78789 0.81368 0.89400 0.89051
0.91089 0.91301
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.84 8.28 37.15 0.31 -1.53 16
2 C -0.08 -1.07 0.61 -152.68 -0.09 -1.16 16
3 C 0.17 3.03 5.08 -4.04 -0.02 3.01 16
4 N -0.73 -16.96 5.15 -59.90 -0.31 -17.26 16
5 C -0.24 -6.39 9.99 -15.06 -0.15 -6.54 16
6 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16
7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16
8 N -0.93 -27.12 13.06 55.49 0.72 -26.40 16
9 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16
10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16
13 C -0.12 -1.60 5.74 -24.47 -0.14 -1.74 16
14 C 0.11 1.30 6.58 -2.41 -0.02 1.29 16
15 N -0.61 -7.22 3.32 -170.39 -0.57 -7.78 16
16 C 0.53 6.36 6.84 -10.99 -0.08 6.28 16
17 O -0.54 -8.25 16.73 5.56 0.09 -8.16 16
18 C -0.11 -0.92 2.16 -91.70 -0.20 -1.11 16
19 H 0.10 0.77 6.91 -51.93 -0.36 0.41 16
20 C -0.10 -0.81 4.78 -26.67 -0.13 -0.94 16
21 C -0.07 -0.54 5.96 -28.10 -0.17 -0.71 16
22 C 0.18 1.66 6.62 -82.43 -0.55 1.11 16
23 N -0.52 -5.16 10.32 -11.00 -0.11 -5.28 16
24 C 0.29 2.59 12.29 -92.30 -1.13 1.45 16
25 N -0.52 -5.02 10.44 -14.54 -0.15 -5.18 16
26 C 0.15 1.26 10.94 -17.10 -0.19 1.08 16
27 C -0.18 -1.47 5.73 -104.68 -0.60 -2.07 16
28 C -0.06 -0.46 5.02 -28.15 -0.14 -0.60 16
29 C 0.11 1.21 5.39 -3.07 -0.02 1.19 16
30 H 0.05 0.57 7.41 -51.93 -0.38 0.19 16
31 H 0.07 1.24 6.69 -51.93 -0.35 0.89 16
32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
33 H 0.02 0.38 8.10 -51.93 -0.42 -0.04 16
34 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16
35 H 0.39 9.36 6.21 -40.82 -0.25 9.11 16
36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16
37 H 0.08 1.16 8.02 -51.93 -0.42 0.75 16
38 H 0.09 1.30 8.04 -51.93 -0.42 0.89 16
39 H 0.07 0.81 7.69 -51.93 -0.40 0.41 16
40 H 0.07 0.95 8.08 -51.93 -0.42 0.54 16
41 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16
42 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16
43 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16
44 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16
45 H 0.20 1.13 8.06 -52.49 -0.42 0.71 16
46 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16
47 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16
48 H 0.09 0.73 8.11 -51.93 -0.42 0.31 16
49 H 0.07 0.75 7.31 -51.93 -0.38 0.37 16
50 H 0.07 0.66 7.85 -51.93 -0.41 0.26 16
LS Contribution 397.02 15.07 5.98 5.98
Total: -1.00 -32.49 397.02 -10.74 -43.23
By element:
Atomic # 1 Polarization: 13.49 SS G_CDS: -7.97 Total: 5.52 kcal
Atomic # 6 Polarization: 1.96 SS G_CDS: -3.40 Total: -1.44 kcal
Atomic # 7 Polarization: -61.48 SS G_CDS: -0.42 Total: -61.90 kcal
Atomic # 8 Polarization: -8.25 SS G_CDS: 0.09 Total: -8.16 kcal
Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal
Total LS contribution 5.98 Total: 5.98 kcal
Total: -32.49 -10.74 -43.23 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001569671582.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.943 kcal
(2) G-P(sol) polarization free energy of solvation -32.495 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.448 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.740 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.235 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.708 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds