Wall clock time and date at job start Wed Apr 1 2020 03:47:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53008 * 110.63805 * 2 1
4 4 N 1.46499 * 109.47219 * 56.85780 * 3 2 1
5 5 C 1.36938 * 119.99899 * 180.02562 * 4 3 2
6 6 H 1.07995 * 119.99860 * 359.97438 * 5 4 3
7 7 C 1.38811 * 119.99794 * 180.02562 * 5 4 3
8 8 N 1.31615 * 120.00196 * 359.97438 * 7 5 4
9 9 Si 1.86795 * 120.00003 * 180.02562 * 7 5 4
10 10 H 1.48501 * 109.47275 * 89.99625 * 9 7 5
11 11 H 1.48499 * 109.47602 * 209.99827 * 9 7 5
12 12 H 1.48508 * 109.47175 * 329.99849 * 9 7 5
13 13 C 1.55153 * 110.87753 * 123.24529 * 2 1 3
14 14 C 1.55125 * 101.48547 * 82.76954 * 13 2 1
15 15 N 1.47424 * 104.72200 * 37.29463 * 14 13 2
16 16 C 1.34775 * 125.64670 * 155.81743 * 15 14 13
17 17 O 1.21279 * 120.00103 * 4.71555 * 16 15 14
18 18 C 1.50698 * 120.00231 * 184.71955 * 16 15 14
19 19 H 1.09004 * 109.62907 * 25.84807 * 18 16 15
20 20 C 1.53307 * 109.63624 * 146.24414 * 18 16 15
21 21 C 1.52815 * 108.51526 * 189.47058 * 20 18 16
22 22 C 1.50443 * 110.43750 * 308.91594 * 21 20 18
23 23 N 1.32897 * 118.53260 * 198.00761 * 22 21 20
24 24 C 1.31605 * 121.06031 * 180.59185 * 23 22 21
25 25 N 1.31809 * 121.67001 * 359.44876 * 24 23 22
26 26 C 1.32201 * 120.64455 * 0.16084 * 25 24 23
27 27 C 1.37771 * 122.58092 * 17.83943 * 22 21 20
28 28 C 1.50338 * 122.79957 * 359.23935 * 27 22 21
29 29 C 1.47016 * 108.70421 * 335.55756 * 15 14 13
30 30 H 1.09002 * 109.46907 * 183.14365 * 1 2 3
31 31 H 1.09002 * 109.47603 * 303.13944 * 1 2 3
32 32 H 1.08998 * 109.47621 * 63.14294 * 1 2 3
33 33 H 1.09005 * 109.47008 * 176.86085 * 3 2 1
34 34 H 1.09009 * 109.46697 * 296.85993 * 3 2 1
35 35 H 0.97000 * 120.00204 * 0.02562 * 4 3 2
36 36 H 0.97000 * 120.00476 * 180.02562 * 8 7 5
37 37 H 1.09005 * 111.00810 * 201.00924 * 13 2 1
38 38 H 1.08998 * 111.00227 * 324.82337 * 13 2 1
39 39 H 1.09000 * 110.49907 * 278.45726 * 14 13 2
40 40 H 1.08998 * 110.34575 * 156.06187 * 14 13 2
41 41 H 1.08999 * 109.63166 * 69.76110 * 20 18 16
42 42 H 1.08997 * 109.79402 * 309.26941 * 20 18 16
43 43 H 1.09006 * 109.30558 * 188.62034 * 21 20 18
44 44 H 1.08997 * 109.31437 * 69.21474 * 21 20 18
45 45 H 1.07996 * 119.16288 * 179.73289 * 24 23 22
46 46 H 1.07996 * 120.36293 * 180.02562 * 26 25 24
47 47 H 1.09001 * 109.30463 * 137.91256 * 28 27 22
48 48 H 1.09006 * 109.30294 * 257.30960 * 28 27 22
49 49 H 1.08997 * 109.88771 * 120.70431 * 29 15 14
50 50 H 1.08997 * 109.88076 * 241.71351 * 29 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0692 1.4319 0.0000
4 7 1.5347 2.1551 1.1565
5 6 1.8808 3.4633 1.3657
6 1 2.5481 3.9619 0.6783
7 6 1.3747 4.1484 2.4618
8 7 0.5619 3.5407 3.2997
9 14 1.8463 5.9332 2.7468
10 1 0.8732 6.8184 2.0577
11 1 1.8331 6.2223 4.2033
12 1 3.2075 6.1781 2.2059
13 6 2.0829 -0.7947 1.2124
14 6 2.0142 -2.2516 0.6840
15 7 2.3757 -2.1505 -0.7416
16 6 2.8903 -3.1434 -1.4938
17 8 3.0129 -4.2563 -1.0275
18 6 3.3135 -2.8709 -2.9142
19 1 3.5699 -1.8172 -3.0241
20 6 4.5297 -3.7362 -3.2644
21 6 5.0814 -3.2748 -4.6127
22 6 3.9815 -3.2138 -5.6373
23 7 4.3132 -3.1902 -6.9240
24 6 3.3919 -3.1254 -7.8616
25 7 2.1073 -3.0920 -7.5684
26 6 1.7024 -3.1198 -6.3102
27 6 2.6478 -3.1849 -5.2932
28 6 2.1736 -3.2285 -3.8672
29 6 2.0760 -0.7891 -1.2086
30 1 -0.3633 -1.0261 0.0564
31 1 -0.3634 0.5618 0.8605
32 1 -0.3634 0.4642 -0.9168
33 1 3.1576 1.4102 0.0563
34 1 1.7627 1.9355 -0.9169
35 1 0.9356 1.7072 1.7741
36 1 0.2079 4.0194 4.0655
37 1 3.1097 -0.5042 1.4346
38 1 1.4450 -0.6671 2.0869
39 1 1.0052 -2.6497 0.7921
40 1 2.7298 -2.8808 1.2132
41 1 4.2285 -4.7816 -3.3304
42 1 5.2959 -3.6236 -2.4974
43 1 5.8473 -3.9746 -4.9472
44 1 5.5253 -2.2855 -4.5011
45 1 3.6961 -3.1036 -8.8976
46 1 0.6486 -3.0927 -6.0752
47 1 1.3581 -2.5171 -3.7368
48 1 1.8132 -4.2314 -3.6378
49 1 2.9850 -0.3160 -1.5801
50 1 1.3271 -0.8250 -1.9997
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001569671582.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:47:04
Heat of formation + Delta-G solvation = -7.006577 kcal
Electronic energy + Delta-G solvation = -30265.328477 eV
Core-core repulsion = 26291.208010 eV
Total energy + Delta-G solvation = -3974.120467 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-42.40693 -41.37108 -39.56642 -37.62383 -36.42213 -35.06836 -34.23764 -32.58919
-32.17292 -31.45829 -30.38553 -27.88861 -27.14295 -26.38128 -25.41259 -24.39045
-24.03225 -23.71758 -21.58661 -20.17365 -19.97194 -19.14503 -18.70845 -18.19501
-17.79293 -17.20908 -16.64782 -16.38561 -16.02371 -15.85864 -15.54752 -15.27070
-15.12908 -15.00296 -14.87305 -14.69254 -14.52892 -14.29179 -14.03926 -13.97157
-13.64557 -13.29536 -13.20259 -12.99758 -12.90928 -12.89005 -12.78251 -12.64522
-12.21053 -12.12048 -12.05388 -11.95952 -11.88282 -11.60919 -11.48424 -11.39839
-11.36422 -10.89648 -10.77276 -10.20818 -10.18034 -9.66172 -8.93100 -7.91720
-5.18348 -0.08838 0.05246 1.49949 1.50187 1.53708 1.58441 1.92990
2.58536 2.74789 3.02436 3.22492 3.33214 3.41386 3.46077 3.47318
3.60672 3.61976 3.78812 3.86623 3.94288 4.17345 4.25257 4.26482
4.29006 4.31451 4.37282 4.39794 4.44858 4.55786 4.60005 4.67712
4.73024 4.78160 4.84404 4.87337 4.91114 4.98903 5.02114 5.06523
5.09488 5.14087 5.19443 5.23920 5.29060 5.37461 5.46776 5.52322
5.54771 5.99690 6.31194 6.50853 7.09769 7.10059 7.38853 8.16325
8.38810 9.31718
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.014862 B = 0.002319 C = 0.002165
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1883.562328 B =12073.169470 C =12928.703200
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.071 4.071
3 C 0.167 3.833
4 N -0.739 5.739
5 C -0.239 4.239
6 H 0.074 0.926
7 C -0.074 4.074
8 N -0.968 5.968
9 Si 0.967 3.033
10 H -0.289 1.289
11 H -0.299 1.299
12 H -0.271 1.271
13 C -0.113 4.113
14 C 0.111 3.889
15 N -0.611 5.611
16 C 0.536 3.464
17 O -0.579 6.579
18 C -0.099 4.099
19 H 0.111 0.889
20 C -0.095 4.095
21 C -0.067 4.067
22 C 0.169 3.831
23 N -0.540 5.540
24 C 0.281 3.719
25 N -0.541 5.541
26 C 0.149 3.851
27 C -0.177 4.177
28 C -0.053 4.053
29 C 0.116 3.884
30 H 0.066 0.934
31 H 0.041 0.959
32 H 0.064 0.936
33 H 0.020 0.980
34 H 0.027 0.973
35 H 0.377 0.623
36 H 0.250 0.750
37 H 0.066 0.934
38 H 0.075 0.925
39 H 0.075 0.925
40 H 0.069 0.931
41 H 0.069 0.931
42 H 0.082 0.918
43 H 0.100 0.900
44 H 0.104 0.896
45 H 0.217 0.783
46 H 0.194 0.806
47 H 0.105 0.895
48 H 0.087 0.913
49 H 0.084 0.916
50 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.529 -16.081 -18.875 25.207
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.072 4.072
3 C 0.040 3.960
4 N -0.383 5.383
5 C -0.371 4.371
6 H 0.092 0.908
7 C -0.266 4.266
8 N -0.619 5.619
9 Si 0.797 3.203
10 H -0.216 1.216
11 H -0.226 1.226
12 H -0.196 1.196
13 C -0.151 4.151
14 C -0.011 4.011
15 N -0.344 5.344
16 C 0.326 3.674
17 O -0.459 6.459
18 C -0.120 4.120
19 H 0.130 0.870
20 C -0.134 4.134
21 C -0.104 4.104
22 C 0.025 3.975
23 N -0.254 5.254
24 C -0.007 4.007
25 N -0.255 5.255
26 C -0.018 4.018
27 C -0.181 4.181
28 C -0.092 4.092
29 C -0.007 4.007
30 H 0.085 0.915
31 H 0.060 0.940
32 H 0.083 0.917
33 H 0.038 0.962
34 H 0.045 0.955
35 H 0.211 0.789
36 H 0.058 0.942
37 H 0.085 0.915
38 H 0.093 0.907
39 H 0.093 0.907
40 H 0.088 0.912
41 H 0.088 0.912
42 H 0.100 0.900
43 H 0.119 0.881
44 H 0.123 0.877
45 H 0.234 0.766
46 H 0.210 0.790
47 H 0.124 0.876
48 H 0.106 0.894
49 H 0.102 0.898
50 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges 5.024 -16.556 -19.700 26.219
hybrid contribution -0.378 1.014 1.674 1.993
sum 4.646 -15.542 -18.026 24.250
Atomic orbital electron populations
1.21690 0.92951 1.01588 1.02158 1.21644 0.96602 0.94091 0.94827
1.20751 0.95434 0.89844 0.89925 1.42526 1.56946 1.10118 1.28665
1.19597 1.21893 0.89210 1.06384 0.90759 1.25461 1.00939 1.02064
0.98185 1.69789 1.37972 1.37550 1.16563 0.85230 0.78022 0.80765
0.76284 1.21590 1.22551 1.19602 1.22764 1.01593 0.93066 0.97713
1.22251 1.00793 0.97018 0.81069 1.48602 1.62157 1.12215 1.11379
1.20548 0.76040 0.82797 0.88006 1.90692 1.56970 1.23531 1.74692
1.21335 0.97545 1.03435 0.89703 0.87045 1.21385 0.96196 0.99486
0.96293 1.20442 0.94826 1.04611 0.90543 1.21666 0.93844 0.89988
0.92001 1.68443 1.40191 1.15226 1.01556 1.25403 0.84094 0.90514
1.00655 1.68491 1.19761 1.14943 1.22262 1.23750 1.01818 0.89264
0.86948 1.21117 0.94781 1.03888 0.98345 1.20172 0.97302 1.04109
0.87584 1.22175 1.01513 0.80603 0.96424 0.91480 0.94027 0.91682
0.96161 0.95460 0.78947 0.94153 0.91516 0.90654 0.90703 0.91245
0.91224 0.89953 0.88146 0.87745 0.76644 0.78963 0.87635 0.89448
0.89820 0.88652
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.30 8.28 71.98 0.60 -2.70 16
2 C -0.07 -1.84 0.61 -50.99 -0.03 -1.88 16
3 C 0.17 5.77 5.08 86.38 0.44 6.21 16
4 N -0.74 -34.37 5.15 -343.43 -1.77 -36.14 16
5 C -0.24 -12.64 9.99 84.03 0.84 -11.80 16
6 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16
7 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16
8 N -0.97 -57.23 13.06 21.65 0.28 -56.95 16
9 Si 0.97 44.87 29.55 68.60 2.03 46.90 16
10 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16
11 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16
12 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16
13 C -0.11 -3.06 5.74 32.06 0.18 -2.88 16
14 C 0.11 2.62 6.58 86.93 0.57 3.19 16
15 N -0.61 -12.97 3.32 -811.40 -2.70 -15.67 16
16 C 0.54 11.64 6.84 87.66 0.60 12.24 16
17 O -0.58 -16.94 16.73 -3.03 -0.05 -16.99 16
18 C -0.10 -1.47 2.16 -11.49 -0.02 -1.49 16
19 H 0.11 1.37 6.91 -2.38 -0.02 1.35 16
20 C -0.10 -1.39 4.78 30.64 0.15 -1.24 16
21 C -0.07 -0.86 5.96 29.71 0.18 -0.68 16
22 C 0.17 2.76 6.62 42.21 0.28 3.04 16
23 N -0.54 -9.91 10.32 -188.72 -1.95 -11.85 16
24 C 0.28 4.61 12.29 180.94 2.22 6.84 16
25 N -0.54 -9.46 10.44 -199.93 -2.09 -11.55 16
26 C 0.15 2.12 10.94 84.82 0.93 3.05 16
27 C -0.18 -2.55 5.73 -19.90 -0.11 -2.66 16
28 C -0.05 -0.66 5.02 29.68 0.15 -0.51 16
29 C 0.12 2.20 5.39 86.73 0.47 2.67 16
30 H 0.07 1.48 7.41 -2.39 -0.02 1.46 16
31 H 0.04 1.37 6.69 -2.39 -0.02 1.36 16
32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16
33 H 0.02 0.72 8.10 -2.38 -0.02 0.70 16
34 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16
35 H 0.38 18.67 6.21 -92.71 -0.58 18.10 16
36 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16
37 H 0.07 1.96 8.02 -2.38 -0.02 1.94 16
38 H 0.07 2.24 8.04 -2.39 -0.02 2.23 16
39 H 0.07 1.67 7.69 -2.39 -0.02 1.65 16
40 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16
41 H 0.07 1.17 8.09 -2.39 -0.02 1.15 16
42 H 0.08 1.22 8.13 -2.39 -0.02 1.20 16
43 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16
44 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16
45 H 0.22 2.19 8.06 -2.91 -0.02 2.17 16
46 H 0.19 1.58 8.06 -2.91 -0.02 1.56 16
47 H 0.11 0.95 8.14 -2.39 -0.02 0.94 16
48 H 0.09 1.20 8.11 -2.38 -0.02 1.18 16
49 H 0.08 1.44 7.31 -2.39 -0.02 1.43 16
50 H 0.10 1.39 7.85 -2.39 -0.02 1.38 16
Total: -1.00 -69.93 397.02 2.02 -67.91
By element:
Atomic # 1 Polarization: 26.23 SS G_CDS: 0.37 Total: 26.60 kcal
Atomic # 6 Polarization: -0.16 SS G_CDS: 7.90 Total: 7.74 kcal
Atomic # 7 Polarization: -123.94 SS G_CDS: -8.22 Total: -132.16 kcal
Atomic # 8 Polarization: -16.94 SS G_CDS: -0.05 Total: -16.99 kcal
Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal
Total: -69.93 2.02 -67.91 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001569671582.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.908 kcal
(2) G-P(sol) polarization free energy of solvation -69.935 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.027 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.914 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.007 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds