Wall clock time and date at job start Wed Apr 1 2020 03:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39733 * 119.43328 * 2 1 4 4 C 1.38939 * 119.29984 * 179.97438 * 3 2 1 5 5 C 1.47223 * 120.86589 * 180.02562 * 4 3 2 6 6 O 1.21635 * 120.00706 * 179.97438 * 5 4 3 7 7 N 1.34778 * 119.99609 * 359.97438 * 5 4 3 8 8 C 1.46499 * 119.99702 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.47655 * 35.00113 * 8 7 5 10 10 C 1.53004 * 109.46985 * 154.99727 * 8 7 5 11 11 N 1.46499 * 109.47303 * 305.00111 * 10 8 7 12 12 C 1.36936 * 119.99898 * 180.02562 * 11 10 8 13 13 H 1.08003 * 120.00099 * 359.97438 * 12 11 10 14 14 C 1.38813 * 119.99745 * 180.02562 * 12 11 10 15 15 N 1.31621 * 120.00161 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00014 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47232 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47635 * 119.99517 * 16 14 12 19 19 H 1.48501 * 109.47000 * 239.99812 * 16 14 12 20 20 C 1.52999 * 109.47177 * 274.99746 * 8 7 5 21 21 C 1.53000 * 109.46856 * 60.00227 * 20 8 7 22 22 C 1.53005 * 109.47092 * 180.02562 * 20 8 7 23 23 C 1.52996 * 109.47150 * 299.99922 * 20 8 7 24 24 C 1.46559 * 118.27835 * 359.97438 * 4 3 2 25 25 N 1.31973 * 132.72263 * 179.97438 * 24 4 3 26 26 C 1.33743 * 109.17162 * 179.97438 * 25 24 4 27 27 C 1.34959 * 108.60382 * 0.02562 * 26 25 24 28 28 N 1.37005 * 107.15033 * 359.97438 * 27 26 25 29 29 C 1.35121 * 119.42566 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47207 * 90.00026 * 1 2 3 31 31 H 1.08994 * 109.47128 * 210.00056 * 1 2 3 32 32 H 1.09001 * 109.46802 * 330.00566 * 1 2 3 33 33 H 1.08005 * 120.35048 * 359.97438 * 3 2 1 34 34 H 0.96996 * 120.00095 * 359.97438 * 7 5 4 35 35 H 1.08999 * 109.47115 * 65.00269 * 10 8 7 36 36 H 1.09004 * 109.47402 * 184.99912 * 10 8 7 37 37 H 0.96999 * 119.99919 * 359.97438 * 11 10 8 38 38 H 0.96994 * 120.00078 * 180.02562 * 15 14 12 39 39 H 1.08999 * 109.47194 * 60.00632 * 21 20 8 40 40 H 1.09010 * 109.46680 * 179.97438 * 21 20 8 41 41 H 1.08997 * 109.47126 * 299.99571 * 21 20 8 42 42 H 1.08998 * 109.47237 * 60.00095 * 22 20 8 43 43 H 1.08997 * 109.47079 * 179.97438 * 22 20 8 44 44 H 1.08993 * 109.47264 * 299.99910 * 22 20 8 45 45 H 1.09006 * 109.47342 * 60.00106 * 23 20 8 46 46 H 1.09006 * 109.47413 * 179.97438 * 23 20 8 47 47 H 1.08997 * 109.47629 * 300.00421 * 23 20 8 48 48 H 1.08003 * 125.69820 * 179.97438 * 26 25 24 49 49 H 1.07999 * 126.42260 * 180.26559 * 27 26 25 50 50 H 1.07999 * 119.13918 * 0.03028 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1936 1.2170 0.0000 4 6 3.5830 1.2137 0.0005 5 6 4.3413 2.4757 0.0011 6 8 5.5574 2.4546 0.0021 7 7 3.6877 3.6544 0.0006 8 6 4.4422 4.9102 0.0006 9 1 5.3512 4.7881 -0.5885 10 6 3.5845 6.0205 -0.6097 11 7 3.1312 5.6114 -1.9413 12 6 2.3443 6.4503 -2.6844 13 1 2.0576 7.4134 -2.2887 14 6 1.9144 6.0624 -3.9460 15 7 2.2635 4.8885 -4.4282 16 14 0.8405 7.2064 -4.9595 17 1 0.5913 8.4562 -4.1971 18 1 1.5294 7.5326 -6.2339 19 1 -0.4536 6.5398 -5.2529 20 6 4.8121 5.2830 1.4377 21 6 5.6698 4.1727 2.0479 22 6 5.5995 6.5948 1.4377 23 6 3.5362 5.4546 2.2645 24 6 4.2743 -0.0786 0.0017 25 7 5.5516 -0.4107 0.0020 26 6 5.6587 -1.7439 0.0037 27 6 4.4182 -2.2755 0.0040 28 7 3.5312 -1.2313 0.0029 29 6 2.1708 -1.1769 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8901 0.5138 33 1 1.6501 2.1503 -0.0004 34 1 2.7179 3.6713 -0.0005 35 1 2.7197 6.2037 0.0281 36 1 4.1754 6.9329 -0.6914 37 1 3.3891 4.7466 -2.2969 38 1 1.9634 4.6176 -5.3098 39 1 6.5788 4.0505 1.4589 40 1 5.9337 4.4385 3.0716 41 1 5.1085 3.2384 2.0479 42 1 4.9881 7.3856 1.0032 43 1 5.8626 6.8606 2.4615 44 1 6.5084 6.4731 0.8486 45 1 2.9748 4.5202 2.2645 46 1 3.7997 5.7197 3.2885 47 1 2.9251 6.2455 1.8298 48 1 6.5835 -2.3018 0.0039 49 1 4.1711 -3.3268 0.0093 50 1 1.6076 -2.0984 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571629507.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:36 Heat of formation + Delta-G solvation = 64.729444 kcal Electronic energy + Delta-G solvation = -31256.983609 eV Core-core repulsion = 27285.973849 eV Total energy + Delta-G solvation = -3971.009760 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.72220 -39.96191 -37.88521 -37.15961 -34.41403 -33.71449 -33.05069 -32.03237 -30.98053 -28.93911 -27.65238 -27.07538 -26.87336 -26.61551 -24.62317 -23.63358 -22.33677 -21.57991 -21.37457 -20.35690 -18.57634 -17.95497 -17.40363 -16.98417 -16.39402 -15.99274 -15.67166 -15.33507 -15.10585 -14.65949 -14.13041 -13.97922 -13.87095 -13.73393 -13.66751 -13.56667 -13.34548 -13.10804 -12.75738 -12.66224 -12.32074 -12.18335 -12.10817 -11.85405 -11.74771 -11.49599 -11.30274 -11.17969 -11.09172 -10.84062 -10.74429 -10.65844 -10.40808 -10.18335 -9.98985 -9.88699 -9.74077 -9.46382 -8.89911 -8.74912 -8.50864 -7.92616 -6.94257 -5.77876 -3.07531 0.28446 1.20177 2.43265 2.73033 3.05101 3.40712 3.45626 3.47471 3.49299 3.81105 4.06635 4.23949 4.45595 4.55958 4.61399 4.76802 5.00750 5.09198 5.11159 5.17716 5.26531 5.32030 5.37357 5.41025 5.54140 5.60635 5.64271 5.69819 5.78108 5.82393 5.84742 5.95032 5.96628 5.98658 6.10901 6.14067 6.19170 6.23760 6.31027 6.37503 6.51652 6.52872 6.56122 6.58479 6.72510 6.79681 6.94222 7.02881 7.68334 7.89817 7.96243 8.39733 8.62715 9.51653 10.08591 10.43877 11.44285 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008561 B = 0.004005 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3269.963468 B = 6989.172128 C = 8873.057919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.115 4.115 3 C -0.053 4.053 4 C -0.080 4.080 5 C 0.561 3.439 6 O -0.504 6.504 7 N -0.704 5.704 8 C 0.152 3.848 9 H 0.088 0.912 10 C 0.142 3.858 11 N -0.732 5.732 12 C -0.240 4.240 13 H 0.071 0.929 14 C -0.012 4.012 15 N -0.930 5.930 16 Si 0.905 3.095 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.292 1.292 20 C -0.076 4.076 21 C -0.129 4.129 22 C -0.140 4.140 23 C -0.141 4.141 24 C 0.253 3.747 25 N -0.458 5.458 26 C 0.025 3.975 27 C -0.103 4.103 28 N -0.369 5.369 29 C 0.069 3.931 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.151 0.849 34 H 0.400 0.600 35 H 0.029 0.971 36 H 0.036 0.964 37 H 0.386 0.614 38 H 0.254 0.746 39 H 0.062 0.938 40 H 0.040 0.960 41 H 0.052 0.948 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.049 0.951 47 H 0.062 0.938 48 H 0.180 0.820 49 H 0.182 0.818 50 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.190 -12.334 14.724 19.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.118 4.118 3 C -0.077 4.077 4 C -0.086 4.086 5 C 0.346 3.654 6 O -0.379 6.379 7 N -0.356 5.356 8 C 0.047 3.953 9 H 0.106 0.894 10 C 0.014 3.986 11 N -0.376 5.376 12 C -0.371 4.371 13 H 0.089 0.911 14 C -0.208 4.208 15 N -0.578 5.578 16 Si 0.736 3.264 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.220 1.220 20 C -0.078 4.078 21 C -0.187 4.187 22 C -0.198 4.198 23 C -0.198 4.198 24 C 0.006 3.994 25 N -0.176 5.176 26 C -0.126 4.126 27 C -0.233 4.233 28 N -0.041 5.041 29 C -0.053 4.053 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.168 0.832 34 H 0.235 0.765 35 H 0.046 0.954 36 H 0.054 0.946 37 H 0.220 0.780 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.081 0.919 48 H 0.197 0.803 49 H 0.199 0.801 50 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.701 -11.732 14.666 18.795 hybrid contribution -1.708 -0.498 -0.930 2.007 sum -2.408 -12.231 13.736 18.549 Atomic orbital electron populations 1.20723 0.88537 1.03508 1.03450 1.19281 0.97585 0.91228 1.03706 1.21664 0.92210 0.98819 0.94982 1.20292 0.92238 0.90344 1.05679 1.17404 0.87447 0.82704 0.77851 1.90866 1.12542 1.86885 1.47601 1.45774 1.10315 1.04961 1.74515 1.21287 0.96135 0.82940 0.94933 0.89352 1.21105 0.95331 0.94226 0.87954 1.42386 1.60856 1.20643 1.13761 1.19251 1.22667 0.98219 0.97014 0.91126 1.24735 1.01293 0.97082 0.97663 1.69684 1.49761 1.20052 1.18318 0.86154 0.79948 0.79909 0.80374 1.20561 1.21905 1.21956 1.20906 0.95802 0.95974 0.95108 1.21884 1.00164 0.97526 0.99084 1.21881 1.00143 0.96432 1.01346 1.21910 0.97122 1.01746 0.99032 1.21550 0.86778 0.86204 1.04886 1.70826 1.14011 1.12668 1.20127 1.22670 0.97007 0.90585 1.02324 1.22619 0.89168 0.92975 1.18526 1.42843 1.05917 1.08797 1.46560 1.21379 0.81256 1.00237 1.02458 0.90191 0.91222 0.90359 0.83191 0.76490 0.95364 0.94626 0.78012 0.93587 0.91852 0.94102 0.92943 0.91936 0.92936 0.92514 0.92989 0.93230 0.91914 0.80274 0.80077 0.82064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 9.97 36.00 0.36 -0.37 16 2 C -0.11 -1.17 5.82 -105.17 -0.61 -1.78 16 3 C -0.05 -0.67 9.26 -38.76 -0.36 -1.02 16 4 C -0.08 -1.29 6.06 -102.63 -0.62 -1.91 16 5 C 0.56 10.10 6.13 -12.61 -0.08 10.02 16 6 O -0.50 -10.61 13.32 5.25 0.07 -10.54 16 7 N -0.70 -11.52 3.59 -54.94 -0.20 -11.72 16 8 C 0.15 2.58 1.69 -67.93 -0.11 2.47 16 9 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 10 C 0.14 2.70 5.10 -4.04 -0.02 2.68 16 11 N -0.73 -17.80 5.43 -59.91 -0.33 -18.13 16 12 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 13 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 14 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 15 N -0.93 -27.74 13.06 55.49 0.72 -27.01 16 16 Si 0.90 21.97 29.55 -169.99 -5.02 16.95 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 C -0.08 -1.08 0.62 -154.51 -0.10 -1.18 16 21 C -0.13 -1.95 7.00 37.16 0.26 -1.69 16 22 C -0.14 -1.83 8.12 37.16 0.30 -1.53 16 23 C -0.14 -1.76 7.97 37.16 0.30 -1.47 16 24 C 0.25 4.25 7.67 -154.14 -1.18 3.07 16 25 N -0.46 -8.24 10.70 -11.32 -0.12 -8.36 16 26 C 0.02 0.33 11.83 -17.88 -0.21 0.12 16 27 C -0.10 -1.15 11.76 -16.40 -0.19 -1.35 16 28 N -0.37 -4.82 2.94 -61.09 -0.18 -5.00 16 29 C 0.07 0.70 10.48 -16.74 -0.18 0.52 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.34 8.05 -51.93 -0.42 -0.08 16 32 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 33 H 0.15 1.65 6.48 -52.48 -0.34 1.31 16 34 H 0.40 6.02 6.70 -40.82 -0.27 5.75 16 35 H 0.03 0.52 6.17 -51.93 -0.32 0.20 16 36 H 0.04 0.69 6.71 -51.93 -0.35 0.35 16 37 H 0.39 10.17 7.33 -40.82 -0.30 9.87 16 38 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.06 1.07 7.53 -51.93 -0.39 0.67 16 40 H 0.04 0.54 8.14 -51.92 -0.42 0.12 16 41 H 0.05 0.86 5.77 -51.93 -0.30 0.56 16 42 H 0.06 0.82 6.54 -51.93 -0.34 0.48 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.05 0.64 7.60 -51.93 -0.39 0.24 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.79 6.32 -51.93 -0.33 0.46 16 48 H 0.18 1.75 8.06 -52.48 -0.42 1.33 16 49 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 50 H 0.16 0.99 8.04 -52.49 -0.42 0.57 16 LS Contribution 396.75 15.07 5.98 5.98 Total: -1.00 -35.41 396.75 -9.26 -44.67 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -7.49 Total: 13.64 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -2.69 Total: -0.49 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -0.10 Total: -70.22 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.07 Total: -10.54 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.41 -9.26 -44.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571629507.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.403 kcal (2) G-P(sol) polarization free energy of solvation -35.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds