Wall clock time and date at job start Wed Apr 1 2020 03:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39733 * 119.43328 * 2 1 4 4 C 1.38939 * 119.29984 * 179.97438 * 3 2 1 5 5 C 1.47223 * 120.86589 * 180.02562 * 4 3 2 6 6 O 1.21635 * 120.00706 * 179.97438 * 5 4 3 7 7 N 1.34778 * 119.99609 * 359.97438 * 5 4 3 8 8 C 1.46499 * 119.99702 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.47655 * 35.00113 * 8 7 5 10 10 C 1.53004 * 109.46985 * 154.99727 * 8 7 5 11 11 N 1.46499 * 109.47303 * 305.00111 * 10 8 7 12 12 C 1.36936 * 119.99898 * 180.02562 * 11 10 8 13 13 H 1.08003 * 120.00099 * 359.97438 * 12 11 10 14 14 C 1.38813 * 119.99745 * 180.02562 * 12 11 10 15 15 N 1.31621 * 120.00161 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00014 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47232 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47635 * 119.99517 * 16 14 12 19 19 H 1.48501 * 109.47000 * 239.99812 * 16 14 12 20 20 C 1.52999 * 109.47177 * 274.99746 * 8 7 5 21 21 C 1.53000 * 109.46856 * 60.00227 * 20 8 7 22 22 C 1.53005 * 109.47092 * 180.02562 * 20 8 7 23 23 C 1.52996 * 109.47150 * 299.99922 * 20 8 7 24 24 C 1.46559 * 118.27835 * 359.97438 * 4 3 2 25 25 N 1.31973 * 132.72263 * 179.97438 * 24 4 3 26 26 C 1.33743 * 109.17162 * 179.97438 * 25 24 4 27 27 C 1.34959 * 108.60382 * 0.02562 * 26 25 24 28 28 N 1.37005 * 107.15033 * 359.97438 * 27 26 25 29 29 C 1.35121 * 119.42566 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47207 * 90.00026 * 1 2 3 31 31 H 1.08994 * 109.47128 * 210.00056 * 1 2 3 32 32 H 1.09001 * 109.46802 * 330.00566 * 1 2 3 33 33 H 1.08005 * 120.35048 * 359.97438 * 3 2 1 34 34 H 0.96996 * 120.00095 * 359.97438 * 7 5 4 35 35 H 1.08999 * 109.47115 * 65.00269 * 10 8 7 36 36 H 1.09004 * 109.47402 * 184.99912 * 10 8 7 37 37 H 0.96999 * 119.99919 * 359.97438 * 11 10 8 38 38 H 0.96994 * 120.00078 * 180.02562 * 15 14 12 39 39 H 1.08999 * 109.47194 * 60.00632 * 21 20 8 40 40 H 1.09010 * 109.46680 * 179.97438 * 21 20 8 41 41 H 1.08997 * 109.47126 * 299.99571 * 21 20 8 42 42 H 1.08998 * 109.47237 * 60.00095 * 22 20 8 43 43 H 1.08997 * 109.47079 * 179.97438 * 22 20 8 44 44 H 1.08993 * 109.47264 * 299.99910 * 22 20 8 45 45 H 1.09006 * 109.47342 * 60.00106 * 23 20 8 46 46 H 1.09006 * 109.47413 * 179.97438 * 23 20 8 47 47 H 1.08997 * 109.47629 * 300.00421 * 23 20 8 48 48 H 1.08003 * 125.69820 * 179.97438 * 26 25 24 49 49 H 1.07999 * 126.42260 * 180.26559 * 27 26 25 50 50 H 1.07999 * 119.13918 * 0.03028 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1936 1.2170 0.0000 4 6 3.5830 1.2137 0.0005 5 6 4.3413 2.4757 0.0011 6 8 5.5574 2.4546 0.0021 7 7 3.6877 3.6544 0.0006 8 6 4.4422 4.9102 0.0006 9 1 5.3512 4.7881 -0.5885 10 6 3.5845 6.0205 -0.6097 11 7 3.1312 5.6114 -1.9413 12 6 2.3443 6.4503 -2.6844 13 1 2.0576 7.4134 -2.2887 14 6 1.9144 6.0624 -3.9460 15 7 2.2635 4.8885 -4.4282 16 14 0.8405 7.2064 -4.9595 17 1 0.5913 8.4562 -4.1971 18 1 1.5294 7.5326 -6.2339 19 1 -0.4536 6.5398 -5.2529 20 6 4.8121 5.2830 1.4377 21 6 5.6698 4.1727 2.0479 22 6 5.5995 6.5948 1.4377 23 6 3.5362 5.4546 2.2645 24 6 4.2743 -0.0786 0.0017 25 7 5.5516 -0.4107 0.0020 26 6 5.6587 -1.7439 0.0037 27 6 4.4182 -2.2755 0.0040 28 7 3.5312 -1.2313 0.0029 29 6 2.1708 -1.1769 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8901 0.5138 33 1 1.6501 2.1503 -0.0004 34 1 2.7179 3.6713 -0.0005 35 1 2.7197 6.2037 0.0281 36 1 4.1754 6.9329 -0.6914 37 1 3.3891 4.7466 -2.2969 38 1 1.9634 4.6176 -5.3098 39 1 6.5788 4.0505 1.4589 40 1 5.9337 4.4385 3.0716 41 1 5.1085 3.2384 2.0479 42 1 4.9881 7.3856 1.0032 43 1 5.8626 6.8606 2.4615 44 1 6.5084 6.4731 0.8486 45 1 2.9748 4.5202 2.2645 46 1 3.7997 5.7197 3.2885 47 1 2.9251 6.2455 1.8298 48 1 6.5835 -2.3018 0.0039 49 1 4.1711 -3.3268 0.0093 50 1 1.6076 -2.0984 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571629507.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:35 Heat of formation + Delta-G solvation = 42.319167 kcal Electronic energy + Delta-G solvation = -31257.955392 eV Core-core repulsion = 27285.973849 eV Total energy + Delta-G solvation = -3971.981543 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.69795 -41.30357 -38.90331 -38.41116 -36.18572 -34.94303 -34.29677 -33.13524 -32.69150 -30.01946 -29.19965 -28.13882 -27.85861 -27.57643 -26.00644 -25.20152 -23.54874 -22.85128 -22.48469 -21.57648 -19.88181 -19.30461 -18.71945 -18.34791 -17.54714 -17.07558 -16.99171 -16.73280 -16.33533 -16.01821 -15.50937 -15.26729 -15.15988 -14.94884 -14.83425 -14.57485 -14.52210 -14.29694 -14.18382 -13.67051 -13.50705 -13.22568 -13.06525 -13.01153 -12.93658 -12.80797 -12.76335 -12.52299 -12.42064 -12.37135 -12.14448 -11.99963 -11.78116 -11.72655 -11.60179 -11.28791 -11.11176 -10.93948 -10.76176 -9.90405 -9.67049 -8.97337 -8.89581 -7.91476 -5.21238 -0.70353 0.25836 1.48953 1.50435 1.51191 1.60133 1.72439 1.95581 2.22574 2.57802 2.63198 3.10490 3.38025 3.43265 3.58677 3.66310 3.78011 3.80577 3.90986 4.04328 4.24563 4.31016 4.35338 4.43141 4.46025 4.47871 4.58734 4.64821 4.70491 4.80114 4.81741 4.84919 4.89781 4.91738 4.97164 5.07454 5.08998 5.15943 5.18373 5.22452 5.25379 5.31975 5.44539 5.48866 5.53093 5.56714 5.63554 5.66280 6.05370 6.28455 6.58607 6.96109 7.29782 7.35748 8.09303 8.33424 9.31778 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008561 B = 0.004005 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3269.963468 B = 6989.172128 C = 8873.057919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.126 4.126 3 C -0.032 4.032 4 C -0.131 4.131 5 C 0.559 3.441 6 O -0.549 6.549 7 N -0.696 5.696 8 C 0.160 3.840 9 H 0.050 0.950 10 C 0.146 3.854 11 N -0.743 5.743 12 C -0.238 4.238 13 H 0.081 0.919 14 C -0.073 4.073 15 N -0.970 5.970 16 Si 0.971 3.029 17 H -0.263 1.263 18 H -0.301 1.301 19 H -0.292 1.292 20 C -0.070 4.070 21 C -0.118 4.118 22 C -0.138 4.138 23 C -0.136 4.136 24 C 0.220 3.780 25 N -0.520 5.520 26 C -0.005 4.005 27 C -0.079 4.079 28 N -0.373 5.373 29 C 0.083 3.917 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.160 0.840 34 H 0.406 0.594 35 H 0.050 0.950 36 H 0.039 0.961 37 H 0.372 0.628 38 H 0.248 0.752 39 H 0.035 0.965 40 H 0.062 0.938 41 H 0.034 0.966 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.044 0.956 45 H 0.051 0.949 46 H 0.069 0.931 47 H 0.065 0.935 48 H 0.203 0.797 49 H 0.233 0.767 50 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.148 -13.157 16.315 21.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.130 4.130 3 C -0.056 4.056 4 C -0.137 4.137 5 C 0.346 3.654 6 O -0.428 6.428 7 N -0.348 5.348 8 C 0.055 3.945 9 H 0.068 0.932 10 C 0.019 3.981 11 N -0.386 5.386 12 C -0.370 4.370 13 H 0.099 0.901 14 C -0.265 4.265 15 N -0.621 5.621 16 Si 0.801 3.199 17 H -0.187 1.187 18 H -0.229 1.229 19 H -0.219 1.219 20 C -0.071 4.071 21 C -0.176 4.176 22 C -0.196 4.196 23 C -0.193 4.193 24 C -0.027 4.027 25 N -0.239 5.239 26 C -0.153 4.153 27 C -0.208 4.208 28 N -0.045 5.045 29 C -0.039 4.039 30 H 0.098 0.902 31 H 0.118 0.882 32 H 0.101 0.899 33 H 0.177 0.823 34 H 0.242 0.758 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.204 0.796 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.084 0.916 48 H 0.219 0.781 49 H 0.250 0.750 50 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -3.683 -12.523 16.305 20.887 hybrid contribution -0.783 -0.331 -1.376 1.617 sum -4.466 -12.854 14.930 20.201 Atomic orbital electron populations 1.20798 0.85681 1.05315 1.03957 1.19700 0.99407 0.90257 1.03590 1.21974 0.90967 1.00683 0.91987 1.20160 0.93473 0.89434 1.10646 1.17802 0.87181 0.83685 0.76737 1.90823 1.14425 1.87553 1.49953 1.45660 1.10432 1.04522 1.74177 1.21113 0.94246 0.82783 0.96352 0.93153 1.21231 0.96120 0.94737 0.85965 1.42572 1.60700 1.19845 1.15478 1.19672 1.21666 0.98535 0.97143 0.90108 1.25521 1.03317 0.98578 0.99075 1.69857 1.51689 1.22088 1.18428 0.85107 0.77895 0.78620 0.78319 1.18749 1.22878 1.21908 1.20858 0.96949 0.96161 0.93159 1.21746 0.98835 0.97156 0.99822 1.21877 0.99463 0.95589 1.02673 1.21868 0.95782 1.01917 0.99713 1.21619 0.87183 0.87511 1.06426 1.70708 1.15705 1.15370 1.22149 1.23241 0.99345 0.89494 1.03259 1.23388 0.87946 0.94395 1.15097 1.43122 1.07091 1.08080 1.46235 1.22270 0.80139 1.02238 0.99228 0.90151 0.88225 0.89896 0.82268 0.75763 0.93209 0.94369 0.79646 0.94269 0.94609 0.91885 0.94653 0.91663 0.90586 0.93711 0.92954 0.91174 0.91593 0.78065 0.75037 0.77038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 9.97 71.23 0.71 -0.33 16 2 C -0.13 -2.29 5.82 -20.22 -0.12 -2.41 16 3 C -0.03 -0.81 9.26 22.80 0.21 -0.60 16 4 C -0.13 -4.48 6.06 -18.58 -0.11 -4.59 16 5 C 0.56 21.82 6.13 86.60 0.53 22.35 16 6 O -0.55 -25.52 13.32 -4.14 -0.06 -25.58 16 7 N -0.70 -24.09 3.59 -445.97 -1.60 -25.70 16 8 C 0.16 5.70 1.69 44.99 0.08 5.78 16 9 H 0.05 2.18 7.58 -2.38 -0.02 2.16 16 10 C 0.15 5.58 5.10 86.38 0.44 6.02 16 11 N -0.74 -36.82 5.43 -343.44 -1.87 -38.69 16 12 C -0.24 -12.85 9.99 84.03 0.84 -12.02 16 13 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 14 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 15 N -0.97 -59.21 13.06 21.65 0.28 -58.92 16 16 Si 0.97 45.26 29.55 68.60 2.03 47.29 16 17 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 18 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 19 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 20 C -0.07 -1.98 0.62 -52.18 -0.03 -2.02 16 21 C -0.12 -3.70 7.00 71.98 0.50 -3.20 16 22 C -0.14 -3.53 8.12 71.98 0.58 -2.94 16 23 C -0.14 -3.16 7.97 71.98 0.57 -2.59 16 24 C 0.22 7.70 7.67 135.77 1.04 8.75 16 25 N -0.52 -19.92 10.70 -189.72 -2.03 -21.95 16 26 C 0.00 -0.13 11.83 83.65 0.99 0.86 16 27 C -0.08 -1.60 11.76 83.13 0.98 -0.62 16 28 N -0.37 -9.22 2.94 -347.20 -1.02 -10.24 16 29 C 0.08 1.40 10.48 83.30 0.87 2.28 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 0.46 8.05 -2.39 -0.02 0.45 16 32 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 33 H 0.16 3.49 6.48 -2.91 -0.02 3.47 16 34 H 0.41 12.65 6.70 -92.71 -0.62 12.03 16 35 H 0.05 1.74 6.17 -2.39 -0.01 1.72 16 36 H 0.04 1.47 6.71 -2.39 -0.02 1.46 16 37 H 0.37 20.42 7.33 -92.71 -0.68 19.74 16 38 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 39 H 0.03 1.29 7.53 -2.39 -0.02 1.28 16 40 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.03 1.22 5.77 -2.39 -0.01 1.20 16 42 H 0.06 1.62 6.54 -2.39 -0.02 1.61 16 43 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.05 1.22 7.60 -2.38 -0.02 1.20 16 46 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 47 H 0.07 1.50 6.32 -2.39 -0.02 1.49 16 48 H 0.20 3.98 8.06 -2.91 -0.02 3.96 16 49 H 0.23 2.04 8.06 -2.91 -0.02 2.02 16 50 H 0.21 1.34 8.04 -2.91 -0.02 1.32 16 Total: -1.00 -83.16 396.75 3.96 -79.20 By element: Atomic # 1 Polarization: 43.83 SS G_CDS: -0.33 Total: 43.50 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 8.55 Total: 11.08 kcal Atomic # 7 Polarization: -149.26 SS G_CDS: -6.24 Total: -155.49 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.06 Total: -25.58 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -83.16 3.96 -79.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571629507.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.522 kcal (2) G-P(sol) polarization free energy of solvation -83.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds