Wall clock time and date at job start Wed Apr 1 2020 03:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36327 * 119.74615 * 2 1 4 4 C 1.47525 * 120.16558 * 359.95380 * 3 2 1 5 5 O 1.21598 * 120.00014 * 306.07854 * 4 3 2 6 6 N 1.34778 * 119.99724 * 126.07891 * 4 3 2 7 7 C 1.46501 * 120.00089 * 4.65057 * 6 4 3 8 8 C 1.46497 * 119.99906 * 184.64511 * 6 4 3 9 9 C 1.53006 * 109.47109 * 90.00456 * 8 6 4 10 10 C 1.53001 * 109.46680 * 299.99901 * 9 8 6 11 11 C 1.52997 * 109.47172 * 59.99820 * 9 8 6 12 12 C 1.52999 * 109.46925 * 179.97438 * 9 8 6 13 13 N 1.46501 * 109.46605 * 179.97438 * 12 9 8 14 14 C 1.36939 * 119.99857 * 180.02562 * 13 12 9 15 15 H 1.08004 * 119.99773 * 359.97438 * 14 13 12 16 16 C 1.38806 * 120.00166 * 180.02562 * 14 13 12 17 17 N 1.31622 * 120.00235 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00390 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47062 * 59.99589 * 18 16 14 20 20 H 1.48493 * 109.47612 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46881 * 299.99915 * 18 16 14 22 22 C 1.46499 * 119.66701 * 179.97438 * 3 2 1 23 23 C 1.35535 * 119.04778 * 0.02562 * 22 3 2 24 24 C 1.41233 * 119.42334 * 359.97438 * 23 22 3 25 25 C 1.37910 * 132.96753 * 180.02562 * 24 23 22 26 26 N 1.33448 * 107.65732 * 179.72033 * 25 24 23 27 27 C 1.30748 * 109.93911 * 0.42763 * 26 25 24 28 28 N 1.35920 * 109.20307 * 359.56780 * 27 26 25 29 29 H 1.08996 * 109.47351 * 265.40573 * 1 2 3 30 30 H 1.09001 * 109.47320 * 25.41403 * 1 2 3 31 31 H 1.09001 * 109.47101 * 145.40831 * 1 2 3 32 32 H 1.08997 * 109.47521 * 84.45097 * 7 6 4 33 33 H 1.08996 * 109.47322 * 204.45869 * 7 6 4 34 34 H 1.09002 * 109.47217 * 324.45119 * 7 6 4 35 35 H 1.09002 * 109.47157 * 209.99949 * 8 6 4 36 36 H 1.08995 * 109.47059 * 330.00492 * 8 6 4 37 37 H 1.08998 * 109.47461 * 60.00154 * 10 9 8 38 38 H 1.08999 * 109.46999 * 180.02562 * 10 9 8 39 39 H 1.08995 * 109.47485 * 299.99963 * 10 9 8 40 40 H 1.09003 * 109.47232 * 59.99573 * 11 9 8 41 41 H 1.08996 * 109.47504 * 180.02562 * 11 9 8 42 42 H 1.09008 * 109.46820 * 300.00376 * 11 9 8 43 43 H 1.08990 * 109.47049 * 299.99810 * 12 9 8 44 44 H 1.08995 * 109.47128 * 60.00106 * 12 9 8 45 45 H 0.96994 * 120.00305 * 0.02562 * 13 12 9 46 46 H 0.97001 * 120.00308 * 180.02562 * 17 16 14 47 47 H 1.08001 * 120.47736 * 180.02562 * 22 3 2 48 48 H 1.08002 * 120.28895 * 179.97438 * 23 22 3 49 49 H 1.08000 * 126.17275 * 0.02562 * 25 24 23 50 50 H 1.07996 * 125.39935 * 179.82355 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1834 1.1836 0.0000 4 6 1.4438 2.4601 -0.0010 5 8 0.6030 2.6749 -0.8528 6 7 1.7001 3.3881 0.9422 7 6 2.7822 3.1734 1.9061 8 6 0.8967 4.6116 1.0033 9 6 -0.3086 4.3851 1.9183 10 6 -1.1615 3.2420 1.3644 11 6 0.1782 4.0238 3.3230 12 6 -1.1473 5.6631 1.9826 13 7 -2.3017 5.4459 2.8582 14 6 -3.2007 6.4570 3.0694 15 1 -3.0584 7.4147 2.5908 16 6 -4.2941 6.2515 3.8994 17 7 -4.4666 5.0849 4.4839 18 14 -5.5201 7.6310 4.1880 19 1 -6.1237 8.0358 2.8930 20 1 -6.5876 7.1604 5.1067 21 1 -4.8231 8.7938 4.7942 22 6 3.6484 1.1816 0.0006 23 6 4.3048 -0.0042 0.0006 24 6 3.5646 -1.2070 0.0005 25 6 3.9314 -2.5364 0.0010 26 7 2.8133 -3.2648 0.0069 27 6 1.7688 -2.4784 0.0011 28 7 2.1837 -1.1840 0.0006 29 1 -0.3634 -0.0823 1.0243 30 1 -0.3634 0.9282 -0.4410 31 1 -0.3633 -0.8460 -0.5834 32 1 3.7274 3.4955 1.4691 33 1 2.5841 3.7506 2.8093 34 1 2.8402 2.1143 2.1573 35 1 1.5043 5.4260 1.3979 36 1 0.5498 4.8689 0.0026 37 1 -0.5638 2.3316 1.3189 38 1 -2.0204 3.0808 2.0159 39 1 -1.5083 3.4993 0.3636 40 1 0.7860 4.8381 3.7176 41 1 -0.6803 3.8620 3.9747 42 1 0.7761 3.1135 3.2774 43 1 -0.5395 6.4770 2.3774 44 1 -1.4941 5.9208 0.9820 45 1 -2.4292 4.5859 3.2883 46 1 -5.2309 4.9411 5.0636 47 1 4.1974 2.1116 0.0010 48 1 5.3846 -0.0290 0.0006 49 1 4.9414 -2.9190 0.0018 50 1 0.7395 -2.8053 0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649464330.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:37 Heat of formation + Delta-G solvation = 70.304246 kcal Electronic energy + Delta-G solvation = -30986.803559 eV Core-core repulsion = 27016.035540 eV Total energy + Delta-G solvation = -3970.768019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.09619 -40.56307 -37.92054 -36.95910 -35.36084 -34.28251 -33.13520 -31.86552 -30.27454 -29.19752 -28.01293 -27.87818 -26.87913 -25.93715 -25.38037 -23.78295 -22.99210 -22.43026 -21.43651 -19.93134 -18.56040 -18.31871 -17.36975 -17.24353 -16.58262 -16.41180 -16.16138 -15.67947 -15.27882 -14.75133 -14.47126 -14.24901 -14.06090 -13.88087 -13.76847 -13.64825 -13.49008 -13.34365 -13.07286 -12.79395 -12.62104 -12.52460 -12.35399 -12.19119 -11.90780 -11.74982 -11.31307 -11.20273 -11.01763 -10.97163 -10.81099 -10.76088 -10.63179 -10.36966 -10.29038 -10.10896 -9.85114 -9.68335 -9.46879 -8.85982 -8.68880 -7.86080 -6.89716 -5.75930 -3.03563 0.37993 0.70593 2.02795 2.42525 2.73794 2.86326 3.07238 3.44220 3.48708 3.49576 3.92376 4.12273 4.22535 4.33547 4.43648 4.56935 4.60230 4.89185 4.94691 5.03733 5.05608 5.12554 5.15428 5.20012 5.24515 5.33888 5.39008 5.48707 5.54771 5.60061 5.67726 5.71772 5.76135 5.87552 5.90277 6.05302 6.07935 6.13538 6.22278 6.24689 6.32903 6.43980 6.53962 6.69274 6.72351 6.77158 6.89419 6.90924 7.17499 7.51765 7.70336 7.94773 8.43630 9.54758 10.13365 10.48020 11.47086 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020627 B = 0.002432 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.102696 B =11509.072695 C =12167.975266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.150 3.850 3 C -0.153 4.153 4 C 0.574 3.426 5 O -0.521 6.521 6 N -0.597 5.597 7 C 0.072 3.928 8 C 0.125 3.875 9 C -0.086 4.086 10 C -0.128 4.128 11 C -0.136 4.136 12 C 0.165 3.835 13 N -0.727 5.727 14 C -0.237 4.237 15 H 0.069 0.931 16 C -0.015 4.015 17 N -0.935 5.935 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.287 1.287 22 C -0.095 4.095 23 C -0.085 4.085 24 C 0.006 3.994 25 C -0.021 4.021 26 N -0.453 5.453 27 C 0.152 3.848 28 N -0.372 5.372 29 H 0.090 0.910 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.037 0.963 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.067 0.933 42 H 0.044 0.956 43 H 0.018 0.982 44 H 0.020 0.980 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.143 0.857 48 H 0.151 0.849 49 H 0.181 0.819 50 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.860 -11.390 -8.121 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.047 3.953 3 C -0.159 4.159 4 C 0.361 3.639 5 O -0.398 6.398 6 N -0.329 5.329 7 C -0.071 4.071 8 C 0.003 3.997 9 C -0.087 4.087 10 C -0.185 4.185 11 C -0.194 4.194 12 C 0.037 3.963 13 N -0.373 5.373 14 C -0.368 4.368 15 H 0.087 0.913 16 C -0.210 4.210 17 N -0.584 5.584 18 Si 0.738 3.262 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.213 1.213 22 C -0.116 4.116 23 C -0.104 4.104 24 C -0.102 4.102 25 C -0.174 4.174 26 N -0.166 5.166 27 C -0.123 4.123 28 N -0.045 5.045 29 H 0.108 0.892 30 H 0.137 0.863 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.056 0.944 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.036 0.964 44 H 0.038 0.962 45 H 0.220 0.780 46 H 0.065 0.935 47 H 0.161 0.839 48 H 0.168 0.832 49 H 0.199 0.801 50 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 20.160 -12.030 -8.553 24.986 hybrid contribution -0.621 1.281 0.490 1.506 sum 19.539 -10.748 -8.063 23.713 Atomic orbital electron populations 1.21389 0.86846 1.07155 1.04555 1.20181 0.95137 0.82870 0.97144 1.20191 0.94017 0.92394 1.09341 1.17636 0.82018 0.82775 0.81479 1.90811 1.33598 1.78394 1.36986 1.47662 1.34046 1.20275 1.30872 1.22044 0.89254 1.02575 0.93213 1.21659 0.91959 0.84482 1.01598 1.21106 0.94686 0.97779 0.95114 1.21788 0.99236 0.96142 1.01358 1.21887 1.01485 0.99767 0.96239 1.20575 0.88914 0.92567 0.94224 1.42369 1.25061 1.14743 1.55092 1.19187 1.01920 0.93035 1.22688 0.91322 1.24713 0.98988 0.97005 1.00320 1.69643 1.31135 1.22240 1.35375 0.86272 0.81021 0.81364 0.77555 1.21311 1.21751 1.21349 1.22066 0.91206 0.98734 0.99559 1.20379 1.00108 0.88872 1.01063 1.19743 0.82406 0.97137 1.10868 1.22577 0.98106 0.87018 1.09688 1.69978 0.97904 1.33009 1.15669 1.25146 1.00655 0.76386 1.10091 1.42933 1.07524 1.06561 1.47461 0.89182 0.86289 0.90088 0.92492 0.89791 0.91298 0.90232 0.89384 0.94428 0.91879 0.92419 0.93134 0.91394 0.93710 0.96438 0.96220 0.78028 0.93528 0.83916 0.83173 0.80149 0.77095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.86 36.01 0.32 -1.10 16 2 C 0.15 1.61 6.82 -81.26 -0.55 1.05 16 3 C -0.15 -1.62 4.76 -103.47 -0.49 -2.11 16 4 C 0.57 7.04 4.78 -12.47 -0.06 6.98 16 5 O -0.52 -7.99 13.10 5.28 0.07 -7.92 16 6 N -0.60 -6.46 2.40 -182.81 -0.44 -6.90 16 7 C 0.07 0.56 7.90 59.85 0.47 1.03 16 8 C 0.13 1.57 4.59 -4.04 -0.02 1.55 16 9 C -0.09 -1.32 0.60 -154.51 -0.09 -1.41 16 10 C -0.13 -2.11 7.04 37.16 0.26 -1.85 16 11 C -0.14 -2.01 7.07 37.16 0.26 -1.75 16 12 C 0.17 3.23 5.15 -4.04 -0.02 3.21 16 13 N -0.73 -17.97 5.00 -59.91 -0.30 -18.27 16 14 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 15 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 16 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 17 N -0.94 -28.05 13.06 55.49 0.72 -27.33 16 18 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 C -0.09 -0.76 8.22 -37.22 -0.31 -1.07 16 23 C -0.08 -0.64 10.09 -39.41 -0.40 -1.04 16 24 C 0.01 0.06 6.78 -84.02 -0.57 -0.51 16 25 C -0.02 -0.21 12.00 -16.97 -0.20 -0.41 16 26 N -0.45 -5.17 11.19 -13.78 -0.15 -5.33 16 27 C 0.15 1.53 12.13 -89.36 -1.08 0.45 16 28 N -0.37 -3.91 2.94 -57.74 -0.17 -4.08 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.12 1.45 4.98 -51.93 -0.26 1.19 16 31 H 0.08 0.65 7.65 -51.93 -0.40 0.25 16 32 H 0.06 0.32 7.26 -51.93 -0.38 -0.06 16 33 H 0.08 0.64 6.30 -51.93 -0.33 0.31 16 34 H 0.07 0.52 6.48 -51.93 -0.34 0.19 16 35 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 36 H 0.09 1.22 7.36 -51.93 -0.38 0.83 16 37 H 0.04 0.55 5.18 -51.93 -0.27 0.28 16 38 H 0.06 1.20 6.86 -51.93 -0.36 0.84 16 39 H 0.06 1.02 7.83 -51.93 -0.41 0.61 16 40 H 0.05 0.70 8.07 -51.93 -0.42 0.28 16 41 H 0.07 1.22 6.86 -51.93 -0.36 0.86 16 42 H 0.04 0.56 6.08 -51.92 -0.32 0.25 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.38 9.95 5.36 -40.82 -0.22 9.73 16 46 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.14 0.84 6.90 -52.49 -0.36 0.47 16 48 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 49 H 0.18 1.23 8.06 -52.49 -0.42 0.80 16 50 H 0.21 1.44 7.85 -52.49 -0.41 1.03 16 LS Contribution 386.61 15.07 5.83 5.83 Total: -1.00 -33.97 386.61 -9.47 -43.44 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -7.27 Total: 7.41 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -2.73 Total: -4.21 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -0.34 Total: -61.90 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: 0.07 Total: -7.92 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.97 -9.47 -43.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649464330.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.742 kcal (2) G-P(sol) polarization free energy of solvation -33.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds