Wall clock time and date at job start Wed Apr 1 2020 03:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36327 * 119.74615 * 2 1 4 4 C 1.47525 * 120.16558 * 359.95380 * 3 2 1 5 5 O 1.21598 * 120.00014 * 306.07854 * 4 3 2 6 6 N 1.34778 * 119.99724 * 126.07891 * 4 3 2 7 7 C 1.46501 * 120.00089 * 4.65057 * 6 4 3 8 8 C 1.46497 * 119.99906 * 184.64511 * 6 4 3 9 9 C 1.53006 * 109.47109 * 90.00456 * 8 6 4 10 10 C 1.53001 * 109.46680 * 299.99901 * 9 8 6 11 11 C 1.52997 * 109.47172 * 59.99820 * 9 8 6 12 12 C 1.52999 * 109.46925 * 179.97438 * 9 8 6 13 13 N 1.46501 * 109.46605 * 179.97438 * 12 9 8 14 14 C 1.36939 * 119.99857 * 180.02562 * 13 12 9 15 15 H 1.08004 * 119.99773 * 359.97438 * 14 13 12 16 16 C 1.38806 * 120.00166 * 180.02562 * 14 13 12 17 17 N 1.31622 * 120.00235 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00390 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47062 * 59.99589 * 18 16 14 20 20 H 1.48493 * 109.47612 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46881 * 299.99915 * 18 16 14 22 22 C 1.46499 * 119.66701 * 179.97438 * 3 2 1 23 23 C 1.35535 * 119.04778 * 0.02562 * 22 3 2 24 24 C 1.41233 * 119.42334 * 359.97438 * 23 22 3 25 25 C 1.37910 * 132.96753 * 180.02562 * 24 23 22 26 26 N 1.33448 * 107.65732 * 179.72033 * 25 24 23 27 27 C 1.30748 * 109.93911 * 0.42763 * 26 25 24 28 28 N 1.35920 * 109.20307 * 359.56780 * 27 26 25 29 29 H 1.08996 * 109.47351 * 265.40573 * 1 2 3 30 30 H 1.09001 * 109.47320 * 25.41403 * 1 2 3 31 31 H 1.09001 * 109.47101 * 145.40831 * 1 2 3 32 32 H 1.08997 * 109.47521 * 84.45097 * 7 6 4 33 33 H 1.08996 * 109.47322 * 204.45869 * 7 6 4 34 34 H 1.09002 * 109.47217 * 324.45119 * 7 6 4 35 35 H 1.09002 * 109.47157 * 209.99949 * 8 6 4 36 36 H 1.08995 * 109.47059 * 330.00492 * 8 6 4 37 37 H 1.08998 * 109.47461 * 60.00154 * 10 9 8 38 38 H 1.08999 * 109.46999 * 180.02562 * 10 9 8 39 39 H 1.08995 * 109.47485 * 299.99963 * 10 9 8 40 40 H 1.09003 * 109.47232 * 59.99573 * 11 9 8 41 41 H 1.08996 * 109.47504 * 180.02562 * 11 9 8 42 42 H 1.09008 * 109.46820 * 300.00376 * 11 9 8 43 43 H 1.08990 * 109.47049 * 299.99810 * 12 9 8 44 44 H 1.08995 * 109.47128 * 60.00106 * 12 9 8 45 45 H 0.96994 * 120.00305 * 0.02562 * 13 12 9 46 46 H 0.97001 * 120.00308 * 180.02562 * 17 16 14 47 47 H 1.08001 * 120.47736 * 180.02562 * 22 3 2 48 48 H 1.08002 * 120.28895 * 179.97438 * 23 22 3 49 49 H 1.08000 * 126.17275 * 0.02562 * 25 24 23 50 50 H 1.07996 * 125.39935 * 179.82355 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1834 1.1836 0.0000 4 6 1.4438 2.4601 -0.0010 5 8 0.6030 2.6749 -0.8528 6 7 1.7001 3.3881 0.9422 7 6 2.7822 3.1734 1.9061 8 6 0.8967 4.6116 1.0033 9 6 -0.3086 4.3851 1.9183 10 6 -1.1615 3.2420 1.3644 11 6 0.1782 4.0238 3.3230 12 6 -1.1473 5.6631 1.9826 13 7 -2.3017 5.4459 2.8582 14 6 -3.2007 6.4570 3.0694 15 1 -3.0584 7.4147 2.5908 16 6 -4.2941 6.2515 3.8994 17 7 -4.4666 5.0849 4.4839 18 14 -5.5201 7.6310 4.1880 19 1 -6.1237 8.0358 2.8930 20 1 -6.5876 7.1604 5.1067 21 1 -4.8231 8.7938 4.7942 22 6 3.6484 1.1816 0.0006 23 6 4.3048 -0.0042 0.0006 24 6 3.5646 -1.2070 0.0005 25 6 3.9314 -2.5364 0.0010 26 7 2.8133 -3.2648 0.0069 27 6 1.7688 -2.4784 0.0011 28 7 2.1837 -1.1840 0.0006 29 1 -0.3634 -0.0823 1.0243 30 1 -0.3634 0.9282 -0.4410 31 1 -0.3633 -0.8460 -0.5834 32 1 3.7274 3.4955 1.4691 33 1 2.5841 3.7506 2.8093 34 1 2.8402 2.1143 2.1573 35 1 1.5043 5.4260 1.3979 36 1 0.5498 4.8689 0.0026 37 1 -0.5638 2.3316 1.3189 38 1 -2.0204 3.0808 2.0159 39 1 -1.5083 3.4993 0.3636 40 1 0.7860 4.8381 3.7176 41 1 -0.6803 3.8620 3.9747 42 1 0.7761 3.1135 3.2774 43 1 -0.5395 6.4770 2.3774 44 1 -1.4941 5.9208 0.9820 45 1 -2.4292 4.5859 3.2883 46 1 -5.2309 4.9411 5.0636 47 1 4.1974 2.1116 0.0010 48 1 5.3846 -0.0290 0.0006 49 1 4.9414 -2.9190 0.0018 50 1 0.7395 -2.8053 0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649464330.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:36 Heat of formation + Delta-G solvation = 51.318928 kcal Electronic energy + Delta-G solvation = -30987.626824 eV Core-core repulsion = 27016.035540 eV Total energy + Delta-G solvation = -3971.591284 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.80990 -41.51550 -39.03843 -37.90202 -36.54337 -35.18220 -34.68185 -32.73183 -32.11859 -29.95910 -28.91807 -28.65797 -28.13210 -27.30945 -26.68427 -24.95574 -23.94624 -23.65577 -22.14661 -20.87187 -19.88587 -19.17004 -19.08641 -18.15207 -17.46365 -17.20935 -16.95829 -16.72392 -16.54887 -16.10950 -15.55983 -15.37753 -15.30866 -15.03960 -14.71242 -14.53624 -14.45742 -14.35810 -14.24180 -13.93407 -13.78608 -13.73901 -13.32028 -13.21457 -12.94396 -12.80130 -12.62243 -12.61826 -12.46280 -12.37153 -12.24208 -12.14018 -11.67546 -11.65414 -11.61484 -11.49496 -11.37574 -10.97276 -10.91169 -10.23465 -9.63378 -8.95685 -8.54226 -7.93600 -5.20888 -0.35467 0.04722 1.23790 1.46803 1.49691 1.55641 1.61459 1.94984 2.07049 2.35989 2.57230 3.19150 3.37722 3.39904 3.59891 3.68296 3.79986 3.84247 3.88958 3.92881 3.96175 4.26347 4.27243 4.33435 4.37687 4.40934 4.48558 4.55103 4.56560 4.61683 4.74495 4.80859 4.82693 4.91557 4.92606 4.94215 4.97604 5.02308 5.12420 5.15912 5.17670 5.18808 5.45326 5.48787 5.49918 5.51174 5.55023 5.59485 6.04785 6.28918 6.30526 6.79802 7.03865 7.35721 8.13501 8.36650 9.29898 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020627 B = 0.002432 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.102696 B =11509.072695 C =12167.975266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.134 3.866 3 C -0.156 4.156 4 C 0.572 3.428 5 O -0.560 6.560 6 N -0.593 5.593 7 C 0.065 3.935 8 C 0.134 3.866 9 C -0.077 4.077 10 C -0.115 4.115 11 C -0.127 4.127 12 C 0.163 3.837 13 N -0.739 5.739 14 C -0.242 4.242 15 H 0.074 0.926 16 C -0.076 4.076 17 N -0.970 5.970 18 Si 0.972 3.028 19 H -0.281 1.281 20 H -0.296 1.296 21 H -0.276 1.276 22 C -0.098 4.098 23 C -0.074 4.074 24 C -0.009 4.009 25 C -0.029 4.029 26 N -0.481 5.481 27 C 0.141 3.859 28 N -0.377 5.377 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.030 0.970 39 H 0.039 0.961 40 H 0.065 0.935 41 H 0.030 0.970 42 H 0.068 0.932 43 H 0.030 0.970 44 H 0.011 0.989 45 H 0.376 0.624 46 H 0.250 0.750 47 H 0.170 0.830 48 H 0.188 0.812 49 H 0.206 0.794 50 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.828 -10.773 -8.148 27.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.031 3.969 3 C -0.163 4.163 4 C 0.360 3.640 5 O -0.439 6.439 6 N -0.323 5.323 7 C -0.077 4.077 8 C 0.011 3.989 9 C -0.078 4.078 10 C -0.172 4.172 11 C -0.184 4.184 12 C 0.036 3.964 13 N -0.382 5.382 14 C -0.374 4.374 15 H 0.092 0.908 16 C -0.268 4.268 17 N -0.621 5.621 18 Si 0.801 3.199 19 H -0.207 1.207 20 H -0.223 1.223 21 H -0.202 1.202 22 C -0.119 4.119 23 C -0.093 4.093 24 C -0.117 4.117 25 C -0.181 4.181 26 N -0.195 5.195 27 C -0.133 4.133 28 N -0.049 5.049 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.126 0.874 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.084 0.916 41 H 0.049 0.951 42 H 0.087 0.913 43 H 0.047 0.953 44 H 0.029 0.971 45 H 0.209 0.791 46 H 0.059 0.941 47 H 0.187 0.813 48 H 0.205 0.795 49 H 0.223 0.777 50 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 23.184 -11.394 -8.586 27.222 hybrid contribution -1.477 1.052 0.441 1.866 sum 21.707 -10.342 -8.145 25.387 Atomic orbital electron populations 1.21298 0.87148 1.06543 1.04665 1.20194 0.95234 0.83258 0.98263 1.20231 0.95440 0.91274 1.09351 1.17933 0.81534 0.83382 0.81160 1.90802 1.35295 1.79189 1.38645 1.47687 1.34262 1.19282 1.31050 1.22312 0.89337 1.03166 0.92879 1.21454 0.91317 0.86101 1.00026 1.21006 0.95189 0.95088 0.96530 1.21638 0.98530 0.97610 0.99441 1.21794 1.00423 1.01533 0.94662 1.20738 0.88016 0.95093 0.92595 1.42563 1.26174 1.13800 1.55690 1.19605 1.02268 0.93759 1.21789 0.90792 1.25522 1.01112 0.99329 1.00868 1.69807 1.31663 1.24199 1.36440 0.85234 0.78548 0.78781 0.77339 1.20704 1.22281 1.20244 1.22305 0.89738 1.00146 0.99669 1.20814 1.01732 0.87583 0.99149 1.20231 0.82348 0.98115 1.10991 1.23081 0.98822 0.87099 1.09147 1.69983 0.98829 1.33914 1.16747 1.25618 1.01474 0.76382 1.09873 1.42998 1.08002 1.06436 1.47513 0.89089 0.88601 0.88601 0.89378 0.89216 0.90894 0.87375 0.90834 0.92723 0.95136 0.94157 0.91568 0.95086 0.91288 0.95260 0.97083 0.79071 0.94118 0.81254 0.79532 0.77727 0.75160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.86 71.24 0.63 -2.21 16 2 C 0.13 2.77 6.82 41.41 0.28 3.05 16 3 C -0.16 -3.05 4.76 -19.12 -0.09 -3.14 16 4 C 0.57 13.36 4.78 86.69 0.41 13.78 16 5 O -0.56 -17.34 13.10 -4.02 -0.05 -17.39 16 6 N -0.59 -11.46 2.40 -850.55 -2.04 -13.50 16 7 C 0.06 0.75 7.90 127.77 1.01 1.76 16 8 C 0.13 3.12 4.59 86.38 0.40 3.51 16 9 C -0.08 -2.34 0.60 -52.18 -0.03 -2.37 16 10 C -0.11 -3.93 7.04 71.98 0.51 -3.43 16 11 C -0.13 -3.60 7.07 71.98 0.51 -3.09 16 12 C 0.16 6.36 5.15 86.38 0.44 6.80 16 13 N -0.74 -37.28 5.00 -343.47 -1.72 -39.00 16 14 C -0.24 -13.57 9.99 84.03 0.84 -12.73 16 15 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 16 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 17 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 18 Si 0.97 46.44 29.55 68.60 2.03 48.47 16 19 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 20 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 C -0.10 -1.25 8.22 23.80 0.20 -1.06 16 23 C -0.07 -0.85 10.09 22.38 0.23 -0.63 16 24 C -0.01 -0.16 6.78 38.81 0.26 0.10 16 25 C -0.03 -0.52 12.00 84.37 1.01 0.49 16 26 N -0.48 -10.60 11.19 -197.51 -2.21 -12.81 16 27 C 0.14 2.76 12.13 179.91 2.18 4.94 16 28 N -0.38 -7.51 2.94 -336.61 -0.99 -8.50 16 29 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.10 2.45 4.98 -2.39 -0.01 2.44 16 31 H 0.10 1.56 7.65 -2.39 -0.02 1.54 16 32 H 0.09 0.54 7.26 -2.39 -0.02 0.52 16 33 H 0.09 0.99 6.30 -2.39 -0.02 0.97 16 34 H 0.07 0.84 6.48 -2.39 -0.02 0.83 16 35 H 0.11 1.94 8.07 -2.39 -0.02 1.92 16 36 H 0.07 1.98 7.36 -2.39 -0.02 1.96 16 37 H 0.05 1.65 5.18 -2.39 -0.01 1.64 16 38 H 0.03 1.22 6.86 -2.39 -0.02 1.20 16 39 H 0.04 1.49 7.83 -2.39 -0.02 1.47 16 40 H 0.07 1.67 8.07 -2.39 -0.02 1.65 16 41 H 0.03 1.11 6.86 -2.39 -0.02 1.09 16 42 H 0.07 1.60 6.08 -2.38 -0.01 1.59 16 43 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.38 20.20 5.36 -92.71 -0.50 19.70 16 46 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 47 H 0.17 1.18 6.90 -2.91 -0.02 1.16 16 48 H 0.19 0.71 8.06 -2.91 -0.02 0.68 16 49 H 0.21 2.30 8.06 -2.91 -0.02 2.27 16 50 H 0.23 3.07 7.85 -2.91 -0.02 3.05 16 Total: -1.00 -76.01 386.61 5.03 -70.99 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.47 Total: 29.26 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 9.26 Total: 1.86 kcal Atomic # 7 Polarization: -126.52 SS G_CDS: -6.67 Total: -133.20 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.05 Total: -17.39 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -76.01 5.03 -70.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649464330.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.306 kcal (2) G-P(sol) polarization free energy of solvation -76.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds