Wall clock time and date at job start Wed Apr 1 2020 03:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34852 * 119.68487 * 2 1 4 4 C 1.40564 * 120.34607 * 179.70219 * 3 2 1 5 5 C 1.35896 * 119.73300 * 0.26958 * 4 3 2 6 6 C 1.41188 * 119.34183 * 0.02562 * 5 4 3 7 7 N 1.32239 * 132.04122 * 180.02562 * 6 5 4 8 8 C 1.34588 * 109.02054 * 179.97438 * 7 6 5 9 9 C 1.47587 * 125.91725 * 179.97438 * 8 7 6 10 10 O 1.21590 * 119.99763 * 173.65483 * 9 8 7 11 11 N 1.34775 * 120.00319 * 353.65596 * 9 8 7 12 12 C 1.46506 * 119.99839 * 3.79911 * 11 9 8 13 13 C 1.50699 * 109.46870 * 83.35335 * 12 11 9 14 14 H 1.07996 * 120.00194 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99847 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00119 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99997 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46830 * 89.99983 * 17 15 13 19 19 H 1.48499 * 109.47272 * 210.00059 * 17 15 13 20 20 H 1.48498 * 109.47186 * 330.00147 * 17 15 13 21 21 C 1.46492 * 120.00158 * 183.80287 * 11 9 8 22 22 C 1.53003 * 109.47302 * 89.99753 * 21 11 9 23 23 C 1.53004 * 109.47156 * 179.97438 * 22 21 11 24 24 N 1.46896 * 109.46936 * 180.02562 * 23 22 21 25 25 C 1.46900 * 110.99988 * 170.00319 * 24 23 22 26 26 C 1.46900 * 111.00002 * 293.95472 * 24 23 22 27 27 C 1.36580 * 108.16347 * 0.02562 * 8 7 6 28 28 N 1.36200 * 107.09175 * 359.97438 * 27 8 7 29 29 H 1.09000 * 109.47160 * 89.99888 * 1 2 3 30 30 H 1.08996 * 109.47135 * 210.00093 * 1 2 3 31 31 H 1.08997 * 109.46944 * 330.00665 * 1 2 3 32 32 H 1.07999 * 119.82302 * 359.97205 * 3 2 1 33 33 H 1.07999 * 120.13594 * 180.25277 * 4 3 2 34 34 H 1.08004 * 120.33138 * 179.97438 * 5 4 3 35 35 H 1.08993 * 109.47086 * 203.35411 * 12 11 9 36 36 H 1.09001 * 109.46968 * 323.35402 * 12 11 9 37 37 H 0.97000 * 120.00222 * 180.02562 * 16 15 13 38 38 H 1.09006 * 109.47345 * 210.00083 * 21 11 9 39 39 H 1.08993 * 109.47615 * 329.99632 * 21 11 9 40 40 H 1.08996 * 109.46837 * 300.00065 * 22 21 11 41 41 H 1.09001 * 109.46635 * 59.99996 * 22 21 11 42 42 H 1.09003 * 109.46842 * 300.00104 * 23 22 21 43 43 H 1.08997 * 109.46887 * 59.99846 * 23 22 21 44 44 H 1.08997 * 109.47138 * 59.99464 * 25 24 23 45 45 H 1.09001 * 109.47196 * 179.97438 * 25 24 23 46 46 H 1.09003 * 109.46988 * 299.99618 * 25 24 23 47 47 H 1.08994 * 109.47039 * 60.00293 * 26 24 23 48 48 H 1.08996 * 109.47152 * 180.02562 * 26 24 23 49 49 H 1.09001 * 109.46825 * 299.99857 * 26 24 23 50 50 H 1.07995 * 126.45209 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1748 1.1715 0.0000 4 6 3.5803 1.1878 0.0063 5 6 4.2679 0.0156 0.0069 6 6 3.5564 -1.2039 0.0006 7 7 3.9583 -2.4637 0.0000 8 6 2.8794 -3.2683 -0.0068 9 6 2.9000 -4.7440 -0.0102 10 8 1.8615 -5.3667 0.1000 11 7 4.0699 -5.4014 -0.1354 12 6 5.3288 -4.6536 -0.1844 13 6 5.7810 -4.3389 1.2182 14 1 5.1896 -4.6631 2.0618 15 6 6.9491 -3.6362 1.4246 16 7 7.6684 -3.2401 0.3974 17 14 7.5093 -3.2454 3.1633 18 1 8.3740 -4.3442 3.6634 19 1 8.2759 -1.9736 3.1623 20 1 6.3234 -3.1079 4.0463 21 6 4.0827 -6.8637 -0.2226 22 6 3.9810 -7.2882 -1.6890 23 6 3.9950 -8.8154 -1.7801 24 7 3.8980 -9.2229 -3.1880 25 6 4.1453 -10.6632 -3.3375 26 6 2.5949 -8.8509 -3.7551 27 6 1.7623 -2.4826 -0.0112 28 7 2.1838 -1.1874 -0.0064 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6268 2.1022 -0.0005 33 1 4.1117 2.1280 0.0104 34 1 5.3479 0.0168 0.0113 35 1 6.0885 -5.2537 -0.6851 36 1 5.1784 -3.7248 -0.7347 37 1 8.4905 -2.7461 0.5425 38 1 5.0113 -7.2450 0.2025 39 1 3.2363 -7.2683 0.3323 40 1 3.0525 -6.9070 -2.1140 41 1 4.8276 -6.8837 -2.2438 42 1 4.9238 -9.1962 -1.3551 43 1 3.1488 -9.2203 -1.2251 44 1 3.4072 -11.2204 -2.7607 45 1 4.0669 -10.9381 -4.3894 46 1 5.1451 -10.8999 -2.9733 47 1 2.4675 -7.7702 -3.6945 48 1 2.5497 -9.1645 -4.7980 49 1 1.8006 -9.3426 -3.1935 50 1 0.7377 -2.8239 -0.0166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649698163.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:05 Heat of formation + Delta-G solvation = 52.935608 kcal Electronic energy + Delta-G solvation = -30582.186367 eV Core-core repulsion = 26610.665188 eV Total energy + Delta-G solvation = -3971.521179 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.78345 -40.68488 -38.70884 -38.22771 -36.84792 -35.06181 -34.63142 -33.12702 -31.99857 -30.30453 -29.11529 -28.49954 -28.09721 -27.48961 -25.32966 -24.65520 -23.63231 -23.30471 -22.14508 -21.76687 -20.11185 -18.93197 -18.43577 -17.71469 -17.65540 -17.06009 -16.88594 -16.58328 -16.36337 -16.18931 -15.93741 -15.75314 -15.38191 -15.17467 -14.93209 -14.74643 -14.39004 -14.23021 -14.04724 -13.58819 -13.47639 -13.33046 -13.25844 -13.17370 -12.94007 -12.86402 -12.67396 -12.57822 -12.43419 -12.38653 -12.36604 -12.22013 -11.97903 -11.88997 -11.62021 -11.54657 -11.13623 -10.65527 -10.23818 -9.80343 -9.38707 -9.32202 -8.71780 -8.02304 -6.08558 -0.24648 0.31336 1.18246 1.38029 1.38482 1.48238 1.56391 2.27679 2.39562 2.50521 2.72778 3.03992 3.27321 3.29905 3.44406 3.73252 3.85733 3.94477 4.09092 4.15852 4.21804 4.23799 4.31266 4.39770 4.44164 4.49781 4.59059 4.63022 4.66386 4.68269 4.70869 4.74670 4.78609 4.82366 4.98053 5.01136 5.01728 5.06862 5.11712 5.19396 5.24548 5.31542 5.38438 5.57376 5.68106 5.91096 5.93100 6.03873 6.11748 6.18293 6.29788 6.54551 6.83246 7.01123 7.32039 7.55357 9.05634 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008581 B = 0.003819 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3262.208103 B = 7329.069199 C = 9778.671826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.065 3.935 3 C -0.136 4.136 4 C -0.080 4.080 5 C -0.112 4.112 6 C 0.194 3.806 7 N -0.444 5.444 8 C -0.023 4.023 9 C 0.590 3.410 10 O -0.588 6.588 11 N -0.584 5.584 12 C 0.249 3.751 13 C -0.505 4.505 14 H 0.029 0.971 15 C 0.033 3.967 16 N -0.915 5.915 17 Si 0.941 3.059 18 H -0.274 1.274 19 H -0.277 1.277 20 H -0.286 1.286 21 C 0.119 3.881 22 C -0.112 4.112 23 C 0.067 3.933 24 N -0.566 5.566 25 C 0.025 3.975 26 C 0.023 3.977 27 C -0.027 4.027 28 N -0.363 5.363 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.197 0.803 33 H 0.178 0.822 34 H 0.136 0.864 35 H 0.006 0.994 36 H 0.064 0.936 37 H 0.261 0.739 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.040 0.960 44 H 0.030 0.970 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.056 0.944 48 H 0.082 0.918 49 H 0.029 0.971 50 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.587 4.708 -5.224 15.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.037 4.037 3 C -0.156 4.156 4 C -0.104 4.104 5 C -0.132 4.132 6 C -0.052 4.052 7 N -0.164 5.164 8 C -0.156 4.156 9 C 0.379 3.621 10 O -0.472 6.472 11 N -0.311 5.311 12 C 0.129 3.871 13 C -0.544 4.544 14 H 0.048 0.952 15 C -0.167 4.167 16 N -0.555 5.555 17 Si 0.768 3.232 18 H -0.200 1.200 19 H -0.202 1.202 20 H -0.212 1.212 21 C -0.005 4.005 22 C -0.151 4.151 23 C -0.061 4.061 24 N -0.290 5.290 25 C -0.122 4.122 26 C -0.125 4.125 27 C -0.163 4.163 28 N -0.035 5.035 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.138 0.862 32 H 0.214 0.786 33 H 0.195 0.805 34 H 0.154 0.846 35 H 0.024 0.976 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.058 0.942 44 H 0.049 0.951 45 H 0.098 0.902 46 H 0.091 0.909 47 H 0.075 0.925 48 H 0.101 0.899 49 H 0.047 0.953 50 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -12.770 4.371 -5.484 14.568 hybrid contribution -0.393 -0.276 1.474 1.551 sum -13.162 4.095 -4.009 14.356 Atomic orbital electron populations 1.21049 0.85145 1.05686 1.04972 1.21219 0.97146 0.83003 1.02335 1.21190 0.94247 0.97516 1.02610 1.21471 0.94530 0.98029 0.96350 1.20504 1.00772 0.88304 1.03633 1.21809 0.81001 0.95349 1.07007 1.71588 1.27622 0.98443 1.18707 1.20685 0.90365 0.94388 1.10157 1.17221 0.83381 0.85326 0.76196 1.90624 1.32979 1.68658 1.54890 1.48139 1.07575 1.07294 1.68097 1.19488 0.78602 0.92045 0.96969 1.21231 1.06427 1.34755 0.91989 0.95230 1.25308 0.96533 0.95418 0.99411 1.70023 1.15336 1.39340 1.30826 0.85847 0.77799 0.78023 0.81573 1.19966 1.20245 1.21160 1.21406 1.02549 0.79472 0.97038 1.21745 1.01508 0.96216 0.95612 1.21948 1.01612 0.93975 0.88572 1.61943 1.32178 1.17629 1.17285 1.22426 1.01424 0.85830 1.02547 1.22424 0.88641 1.01054 1.00361 1.22540 1.00661 0.80799 1.12311 1.43012 1.08420 1.06077 1.46015 0.88507 0.91276 0.86170 0.78596 0.80461 0.84575 0.97566 0.91846 0.93004 0.90327 0.90892 0.92955 0.92537 0.89864 0.94200 0.95136 0.90173 0.90938 0.92543 0.89945 0.95286 0.77216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 9.84 71.23 0.70 -0.75 16 2 C 0.06 1.44 6.78 41.02 0.28 1.72 16 3 C -0.14 -2.34 9.58 22.06 0.21 -2.13 16 4 C -0.08 -1.72 10.06 22.29 0.22 -1.50 16 5 C -0.11 -3.72 10.11 22.45 0.23 -3.50 16 6 C 0.19 7.89 7.79 134.20 1.05 8.94 16 7 N -0.44 -21.87 7.05 -183.49 -1.29 -23.16 16 8 C -0.02 -1.05 6.62 40.80 0.27 -0.78 16 9 C 0.59 28.68 7.61 86.71 0.66 29.34 16 10 O -0.59 -28.50 16.43 -4.00 -0.07 -28.56 16 11 N -0.58 -28.30 2.48 -829.87 -2.05 -30.36 16 12 C 0.25 13.67 4.77 85.63 0.41 14.08 16 13 C -0.50 -29.45 8.34 25.60 0.21 -29.23 16 14 H 0.03 1.80 7.81 -2.91 -0.02 1.78 16 15 C 0.03 1.87 5.46 84.65 0.46 2.33 16 16 N -0.91 -54.15 13.29 21.45 0.28 -53.86 16 17 Si 0.94 45.90 29.54 68.60 2.03 47.92 16 18 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 21 C 0.12 4.80 5.41 86.38 0.47 5.27 16 22 C -0.11 -3.95 5.46 30.60 0.17 -3.79 16 23 C 0.07 1.92 4.96 86.31 0.43 2.35 16 24 N -0.57 -14.92 5.02 -948.86 -4.76 -19.68 16 25 C 0.03 0.51 9.57 127.69 1.22 1.73 16 26 C 0.02 0.56 9.32 127.69 1.19 1.75 16 27 C -0.03 -0.99 10.79 83.63 0.90 -0.08 16 28 N -0.36 -12.08 2.93 -337.95 -0.99 -13.08 16 29 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.02 7.47 -2.39 -0.02 1.00 16 31 H 0.12 0.78 8.07 -2.39 -0.02 0.76 16 32 H 0.20 1.38 8.06 -2.91 -0.02 1.35 16 33 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 34 H 0.14 4.82 8.06 -2.91 -0.02 4.80 16 35 H 0.01 0.36 8.02 -2.39 -0.02 0.34 16 36 H 0.06 3.75 5.33 -2.39 -0.01 3.73 16 37 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 38 H 0.08 3.13 8.07 -2.38 -0.02 3.11 16 39 H 0.07 2.91 7.37 -2.39 -0.02 2.89 16 40 H 0.05 1.94 6.55 -2.39 -0.02 1.93 16 41 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.08 2.24 8.06 -2.39 -0.02 2.22 16 43 H 0.04 1.09 8.12 -2.39 -0.02 1.07 16 44 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.08 1.36 8.12 -2.39 -0.02 1.34 16 46 H 0.07 1.38 8.12 -2.39 -0.02 1.36 16 47 H 0.06 1.53 6.47 -2.39 -0.02 1.51 16 48 H 0.08 1.64 8.12 -2.39 -0.02 1.62 16 49 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.21 6.29 7.78 -2.91 -0.02 6.27 16 Total: -1.00 -78.56 409.06 3.15 -75.41 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.92 Total: 19.63 kcal Atomic # 6 Polarization: 16.66 SS G_CDS: 9.08 Total: 25.74 kcal Atomic # 7 Polarization: -131.33 SS G_CDS: -8.81 Total: -140.14 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.07 Total: -28.56 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -78.56 3.15 -75.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649698163.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.347 kcal (2) G-P(sol) polarization free energy of solvation -78.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds