Wall clock time and date at job start Wed Apr 1 2020 03:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40394 * 120.21989 * 2 1 4 4 C 1.35039 * 120.43920 * 179.63462 * 3 2 1 5 5 N 1.36528 * 120.59582 * 0.60976 * 4 3 2 6 6 C 1.36248 * 132.78245 * 179.23661 * 5 4 3 7 7 N 1.30183 * 109.82294 * 180.02562 * 6 5 4 8 8 C 1.34888 * 109.73050 * 0.02562 * 7 6 5 9 9 C 1.46291 * 126.49424 * 179.97438 * 8 7 6 10 10 O 1.21769 * 119.99849 * 180.02562 * 9 8 7 11 11 N 1.34779 * 120.00103 * 0.03185 * 9 8 7 12 12 C 1.46500 * 120.00196 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.46967 * 325.00170 * 12 11 9 14 14 C 1.52997 * 109.47170 * 204.99986 * 12 11 9 15 15 N 1.46505 * 109.47212 * 54.99826 * 14 12 11 16 16 C 1.36936 * 119.99992 * 179.97438 * 15 14 12 17 17 H 1.08006 * 119.99834 * 0.02562 * 16 15 14 18 18 C 1.38801 * 120.00093 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00176 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00265 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46951 * 89.99797 * 20 18 16 22 22 H 1.48500 * 109.47313 * 210.00112 * 20 18 16 23 23 H 1.48501 * 109.46991 * 330.00153 * 20 18 16 24 24 C 1.52994 * 109.46849 * 84.99779 * 12 11 9 25 25 C 1.53000 * 109.47356 * 295.00050 * 24 12 11 26 26 C 1.53002 * 109.47268 * 175.00333 * 25 24 12 27 27 C 1.53002 * 109.47070 * 295.00107 * 25 24 12 28 28 C 1.37269 * 120.03640 * 359.57004 * 5 4 3 29 29 C 1.36335 * 120.22217 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46804 * 269.97378 * 1 2 3 31 31 H 1.08992 * 109.47487 * 29.96985 * 1 2 3 32 32 H 1.09001 * 109.46912 * 149.97761 * 1 2 3 33 33 H 1.07994 * 119.77854 * 0.04742 * 3 2 1 34 34 H 1.08000 * 119.69405 * 179.90515 * 4 3 2 35 35 H 1.08004 * 125.08966 * 0.02562 * 6 5 4 36 36 H 0.96998 * 119.99752 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.47153 * 294.99818 * 14 12 11 38 38 H 1.09001 * 109.46832 * 175.00009 * 14 12 11 39 39 H 0.96996 * 119.99606 * 0.02562 * 15 14 12 40 40 H 0.97001 * 120.00803 * 179.97438 * 19 18 16 41 41 H 1.08996 * 109.47643 * 55.00002 * 24 12 11 42 42 H 1.09004 * 109.47057 * 175.00174 * 24 12 11 43 43 H 1.09002 * 109.47443 * 55.00279 * 25 24 12 44 44 H 1.09003 * 109.47377 * 59.99931 * 26 25 24 45 45 H 1.09005 * 109.47252 * 179.97438 * 26 25 24 46 46 H 1.08996 * 109.46698 * 299.99946 * 26 25 24 47 47 H 1.08993 * 109.47222 * 299.99795 * 27 25 24 48 48 H 1.08997 * 109.47141 * 60.00336 * 27 25 24 49 49 H 1.09009 * 109.47128 * 179.97438 * 27 25 24 50 50 H 1.07998 * 120.39979 * 359.94625 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2131 0.0000 4 6 3.5640 1.2183 0.0074 5 7 4.2634 0.0458 0.0025 6 6 5.5963 -0.2366 -0.0056 7 7 5.7743 -1.5262 -0.0080 8 6 4.5788 -2.1509 -0.0022 9 6 4.3523 -3.5962 -0.0031 10 8 3.2162 -4.0344 0.0022 11 7 5.4011 -4.4427 -0.0096 12 6 5.1744 -5.8900 -0.0099 13 1 4.2896 -6.1193 0.5840 14 6 6.3902 -6.5969 0.5924 15 7 6.6642 -6.0488 1.9231 16 6 7.7131 -6.5310 2.6596 17 1 8.3387 -7.3151 2.2592 18 6 7.9723 -6.0121 3.9206 19 7 7.2096 -5.0569 4.4088 20 14 9.4036 -6.6694 4.9250 21 1 10.6247 -5.8805 4.6218 22 1 9.0871 -6.5554 6.3714 23 1 9.6370 -8.0949 4.5802 24 6 4.9635 -6.3728 -1.4463 25 6 3.6775 -5.7615 -2.0062 26 6 3.5312 -6.1432 -3.4806 27 6 2.4765 -6.2918 -1.2205 28 6 3.5949 -1.1530 -0.0011 29 6 2.1932 -1.1780 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8902 -0.5133 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6736 2.1484 0.0008 34 1 4.0954 2.1585 0.0058 35 1 6.3869 0.4992 -0.0095 36 1 6.3061 -4.0935 -0.0141 37 1 7.2567 -6.4406 -0.0503 38 1 6.1863 -7.6645 0.6740 39 1 6.1021 -5.3449 2.2828 40 1 7.3905 -4.6945 5.2902 41 1 5.8094 -6.0653 -2.0610 42 1 4.8833 -7.4598 -1.4562 43 1 3.7211 -4.6762 -1.9146 44 1 3.4875 -7.2285 -3.5724 45 1 2.6147 -5.7081 -3.8794 46 1 4.3867 -5.7654 -4.0403 47 1 2.4328 -7.3769 -1.3123 48 1 2.5807 -6.0198 -0.1702 49 1 1.5603 -5.8559 -1.6192 50 1 1.6634 -2.1191 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667092860.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:26 Heat of formation + Delta-G solvation = 48.780808 kcal Electronic energy + Delta-G solvation = -30787.700248 eV Core-core repulsion = 26815.998903 eV Total energy + Delta-G solvation = -3971.701345 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.86577 -39.52711 -37.93021 -36.47609 -34.82648 -34.10281 -33.24577 -31.32706 -31.05976 -29.83528 -28.93254 -26.90712 -26.75842 -25.43982 -24.03388 -23.19915 -22.55121 -22.07943 -20.56622 -19.82808 -19.52271 -18.22531 -17.09643 -16.74343 -16.29079 -16.09553 -15.86545 -15.38896 -15.15121 -14.67393 -14.47592 -14.26942 -13.92340 -13.78318 -13.71205 -13.32990 -13.18263 -12.90440 -12.78273 -12.77012 -12.27827 -12.04853 -11.94226 -11.82927 -11.76539 -11.70986 -11.39929 -10.94105 -10.88367 -10.74145 -10.49820 -10.45958 -10.38203 -10.13366 -10.11595 -9.88662 -9.62177 -9.48066 -9.45711 -8.82399 -8.41622 -7.52349 -6.85314 -5.68207 -2.97609 0.52385 0.97890 2.39836 2.48271 3.12471 3.48265 3.52995 3.54952 3.69683 3.93331 4.18070 4.39055 4.49912 4.54060 4.64341 4.71195 4.89130 5.07030 5.20238 5.27715 5.30069 5.32887 5.35751 5.41487 5.54839 5.63272 5.71649 5.75089 5.76834 5.81251 5.83568 5.97837 6.07267 6.14284 6.16449 6.19533 6.23636 6.30778 6.35163 6.40913 6.43293 6.56505 6.62189 6.78974 6.80237 6.95119 6.99753 7.15347 7.65103 7.76260 8.18093 8.49220 8.77650 9.60940 10.18597 10.54063 11.53989 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008875 B = 0.003583 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3154.263778 B = 7812.045417 C = 9922.645804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.089 4.089 3 C -0.131 4.131 4 C 0.053 3.947 5 N -0.369 5.369 6 C 0.142 3.858 7 N -0.410 5.410 8 C -0.053 4.053 9 C 0.605 3.395 10 O -0.545 6.545 11 N -0.693 5.693 12 C 0.137 3.863 13 H 0.091 0.909 14 C 0.144 3.856 15 N -0.730 5.730 16 C -0.240 4.240 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.930 5.930 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.122 4.122 25 C -0.093 4.093 26 C -0.145 4.145 27 C -0.137 4.137 28 C 0.076 3.924 29 C -0.067 4.067 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.148 0.852 34 H 0.168 0.832 35 H 0.216 0.784 36 H 0.410 0.590 37 H 0.023 0.977 38 H 0.032 0.968 39 H 0.387 0.613 40 H 0.254 0.746 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.037 0.963 48 H 0.077 0.923 49 H 0.041 0.959 50 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.557 13.706 -14.643 23.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.152 4.152 4 C -0.069 4.069 5 N -0.040 5.040 6 C -0.135 4.135 7 N -0.124 5.124 8 C -0.187 4.187 9 C 0.392 3.608 10 O -0.424 6.424 11 N -0.343 5.343 12 C 0.032 3.968 13 H 0.109 0.891 14 C 0.016 3.984 15 N -0.375 5.375 16 C -0.371 4.371 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.578 5.578 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.219 1.219 23 H -0.208 1.208 24 C -0.161 4.161 25 C -0.111 4.111 26 C -0.203 4.203 27 C -0.194 4.194 28 C -0.036 4.036 29 C -0.087 4.087 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.166 0.834 34 H 0.185 0.815 35 H 0.232 0.768 36 H 0.246 0.754 37 H 0.041 0.959 38 H 0.050 0.950 39 H 0.221 0.779 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.056 0.944 48 H 0.096 0.904 49 H 0.060 0.940 50 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -12.279 12.903 -14.579 23.018 hybrid contribution 0.615 0.740 0.838 1.276 sum -11.664 13.643 -13.741 22.605 Atomic orbital electron populations 1.20750 0.89855 1.03204 1.02850 1.19915 0.97098 0.92201 1.00057 1.20775 0.92305 0.99270 1.02888 1.21632 0.93037 0.88648 1.03567 1.43034 1.08608 1.06302 1.46095 1.25051 0.82321 0.94238 1.11842 1.70114 1.25702 1.04043 1.12544 1.20619 0.87375 0.93955 1.16783 1.16410 0.85136 0.83112 0.76183 1.90765 1.22246 1.77294 1.52093 1.45722 1.09555 1.06123 1.72865 1.21377 1.00320 0.79215 0.95868 0.89094 1.20962 0.93385 0.95870 0.88177 1.42346 1.35882 1.45410 1.13850 1.19208 1.05267 1.15549 0.97072 0.91213 1.24735 0.99335 0.99057 0.97729 1.69683 1.40242 1.29662 1.18207 0.86207 0.82220 0.78243 0.79605 1.21792 1.21881 1.20809 1.22016 0.97651 1.00487 0.95908 1.21139 0.94962 1.01362 0.93660 1.21867 1.00726 1.00865 0.96827 1.21821 0.96647 0.98551 1.02344 1.19249 0.93164 0.85162 1.06010 1.20655 0.89753 0.99906 0.98378 0.90641 0.91289 0.90883 0.83397 0.81484 0.76789 0.75373 0.95896 0.94985 0.77907 0.93634 0.92025 0.91215 0.90596 0.93180 0.93380 0.93417 0.94416 0.90400 0.93991 0.82338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.03 36.01 0.36 -0.38 16 2 C -0.09 -0.85 5.89 -104.50 -0.62 -1.46 16 3 C -0.13 -1.00 9.67 -39.91 -0.39 -1.38 16 4 C 0.05 0.43 10.95 -16.60 -0.18 0.25 16 5 N -0.37 -4.47 2.94 -62.18 -0.18 -4.65 16 6 C 0.14 1.80 12.73 -89.53 -1.14 0.66 16 7 N -0.41 -6.81 10.90 -10.53 -0.11 -6.93 16 8 C -0.05 -0.91 7.05 -82.58 -0.58 -1.50 16 9 C 0.60 11.13 6.33 -13.02 -0.08 11.05 16 10 O -0.54 -10.17 10.70 5.13 0.05 -10.12 16 11 N -0.69 -12.70 4.46 -55.23 -0.25 -12.95 16 12 C 0.14 2.45 2.33 -67.94 -0.16 2.29 16 13 H 0.09 1.78 5.92 -51.93 -0.31 1.47 16 14 C 0.14 2.98 5.82 -4.04 -0.02 2.95 16 15 N -0.73 -19.02 5.43 -59.91 -0.33 -19.35 16 16 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 17 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -29.00 13.06 55.49 0.72 -28.27 16 20 Si 0.91 22.93 29.55 -169.99 -5.02 17.90 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 C -0.12 -1.81 4.36 -26.73 -0.12 -1.93 16 25 C -0.09 -1.35 2.38 -90.62 -0.22 -1.56 16 26 C -0.15 -1.79 9.19 37.16 0.34 -1.45 16 27 C -0.14 -2.01 8.03 37.16 0.30 -1.71 16 28 C 0.08 1.14 6.72 -83.99 -0.56 0.57 16 29 C -0.07 -0.86 9.38 -39.54 -0.37 -1.23 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.34 8.10 -51.93 -0.42 -0.09 16 32 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 33 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.22 1.75 8.06 -52.48 -0.42 1.32 16 36 H 0.41 7.85 8.30 -40.82 -0.34 7.51 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.39 10.86 7.33 -40.82 -0.30 10.56 16 40 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.08 1.25 5.19 -51.93 -0.27 0.98 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.08 1.32 4.75 -51.93 -0.25 1.08 16 49 H 0.04 0.59 8.14 -51.92 -0.42 0.16 16 50 H 0.16 2.10 7.17 -52.49 -0.38 1.73 16 LS Contribution 401.30 15.07 6.05 6.05 Total: -1.00 -34.67 401.30 -10.47 -45.14 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -7.72 Total: 15.48 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -3.68 Total: -2.30 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: -0.15 Total: -72.15 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.05 Total: -10.12 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.67 -10.47 -45.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667092860.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.919 kcal (2) G-P(sol) polarization free energy of solvation -34.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds