Wall clock time and date at job start Wed Apr 1 2020 03:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40394 * 120.21989 * 2 1 4 4 C 1.35039 * 120.43920 * 179.63462 * 3 2 1 5 5 N 1.36528 * 120.59582 * 0.60976 * 4 3 2 6 6 C 1.36248 * 132.78245 * 179.23661 * 5 4 3 7 7 N 1.30183 * 109.82294 * 180.02562 * 6 5 4 8 8 C 1.34888 * 109.73050 * 0.02562 * 7 6 5 9 9 C 1.46291 * 126.49424 * 179.97438 * 8 7 6 10 10 O 1.21769 * 119.99849 * 180.02562 * 9 8 7 11 11 N 1.34779 * 120.00103 * 0.03185 * 9 8 7 12 12 C 1.46500 * 120.00196 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.46967 * 325.00170 * 12 11 9 14 14 C 1.52997 * 109.47170 * 204.99986 * 12 11 9 15 15 N 1.46505 * 109.47212 * 54.99826 * 14 12 11 16 16 C 1.36936 * 119.99992 * 179.97438 * 15 14 12 17 17 H 1.08006 * 119.99834 * 0.02562 * 16 15 14 18 18 C 1.38801 * 120.00093 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00176 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00265 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46951 * 89.99797 * 20 18 16 22 22 H 1.48500 * 109.47313 * 210.00112 * 20 18 16 23 23 H 1.48501 * 109.46991 * 330.00153 * 20 18 16 24 24 C 1.52994 * 109.46849 * 84.99779 * 12 11 9 25 25 C 1.53000 * 109.47356 * 295.00050 * 24 12 11 26 26 C 1.53002 * 109.47268 * 175.00333 * 25 24 12 27 27 C 1.53002 * 109.47070 * 295.00107 * 25 24 12 28 28 C 1.37269 * 120.03640 * 359.57004 * 5 4 3 29 29 C 1.36335 * 120.22217 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46804 * 269.97378 * 1 2 3 31 31 H 1.08992 * 109.47487 * 29.96985 * 1 2 3 32 32 H 1.09001 * 109.46912 * 149.97761 * 1 2 3 33 33 H 1.07994 * 119.77854 * 0.04742 * 3 2 1 34 34 H 1.08000 * 119.69405 * 179.90515 * 4 3 2 35 35 H 1.08004 * 125.08966 * 0.02562 * 6 5 4 36 36 H 0.96998 * 119.99752 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.47153 * 294.99818 * 14 12 11 38 38 H 1.09001 * 109.46832 * 175.00009 * 14 12 11 39 39 H 0.96996 * 119.99606 * 0.02562 * 15 14 12 40 40 H 0.97001 * 120.00803 * 179.97438 * 19 18 16 41 41 H 1.08996 * 109.47643 * 55.00002 * 24 12 11 42 42 H 1.09004 * 109.47057 * 175.00174 * 24 12 11 43 43 H 1.09002 * 109.47443 * 55.00279 * 25 24 12 44 44 H 1.09003 * 109.47377 * 59.99931 * 26 25 24 45 45 H 1.09005 * 109.47252 * 179.97438 * 26 25 24 46 46 H 1.08996 * 109.46698 * 299.99946 * 26 25 24 47 47 H 1.08993 * 109.47222 * 299.99795 * 27 25 24 48 48 H 1.08997 * 109.47141 * 60.00336 * 27 25 24 49 49 H 1.09009 * 109.47128 * 179.97438 * 27 25 24 50 50 H 1.07998 * 120.39979 * 359.94625 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2131 0.0000 4 6 3.5640 1.2183 0.0074 5 7 4.2634 0.0458 0.0025 6 6 5.5963 -0.2366 -0.0056 7 7 5.7743 -1.5262 -0.0080 8 6 4.5788 -2.1509 -0.0022 9 6 4.3523 -3.5962 -0.0031 10 8 3.2162 -4.0344 0.0022 11 7 5.4011 -4.4427 -0.0096 12 6 5.1744 -5.8900 -0.0099 13 1 4.2896 -6.1193 0.5840 14 6 6.3902 -6.5969 0.5924 15 7 6.6642 -6.0488 1.9231 16 6 7.7131 -6.5310 2.6596 17 1 8.3387 -7.3151 2.2592 18 6 7.9723 -6.0121 3.9206 19 7 7.2096 -5.0569 4.4088 20 14 9.4036 -6.6694 4.9250 21 1 10.6247 -5.8805 4.6218 22 1 9.0871 -6.5554 6.3714 23 1 9.6370 -8.0949 4.5802 24 6 4.9635 -6.3728 -1.4463 25 6 3.6775 -5.7615 -2.0062 26 6 3.5312 -6.1432 -3.4806 27 6 2.4765 -6.2918 -1.2205 28 6 3.5949 -1.1530 -0.0011 29 6 2.1932 -1.1780 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8902 -0.5133 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6736 2.1484 0.0008 34 1 4.0954 2.1585 0.0058 35 1 6.3869 0.4992 -0.0095 36 1 6.3061 -4.0935 -0.0141 37 1 7.2567 -6.4406 -0.0503 38 1 6.1863 -7.6645 0.6740 39 1 6.1021 -5.3449 2.2828 40 1 7.3905 -4.6945 5.2902 41 1 5.8094 -6.0653 -2.0610 42 1 4.8833 -7.4598 -1.4562 43 1 3.7211 -4.6762 -1.9146 44 1 3.4875 -7.2285 -3.5724 45 1 2.6147 -5.7081 -3.8794 46 1 4.3867 -5.7654 -4.0403 47 1 2.4328 -7.3769 -1.3123 48 1 2.5807 -6.0198 -0.1702 49 1 1.5603 -5.8559 -1.6192 50 1 1.6634 -2.1191 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667092860.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:24 Heat of formation + Delta-G solvation = 27.720220 kcal Electronic energy + Delta-G solvation = -30788.613503 eV Core-core repulsion = 26815.998903 eV Total energy + Delta-G solvation = -3972.614600 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.81569 -40.87839 -38.79549 -37.87593 -36.43693 -35.06809 -34.86096 -32.97340 -32.18492 -30.99638 -30.17261 -27.97433 -27.75786 -27.18386 -25.07070 -24.57352 -23.99314 -22.96637 -21.99600 -21.10847 -20.74915 -19.40632 -19.01732 -17.64245 -17.42746 -17.17928 -17.06956 -16.74547 -16.46197 -16.02356 -15.61366 -15.35166 -15.21626 -15.12447 -14.93538 -14.56362 -14.50473 -14.36716 -14.23040 -13.64748 -13.42404 -13.22248 -13.02317 -12.95436 -12.93409 -12.79799 -12.66184 -12.53945 -12.45382 -12.31839 -12.09985 -11.88729 -11.62025 -11.49190 -11.43866 -11.35367 -11.20723 -10.98028 -10.77330 -10.34087 -9.82983 -9.00887 -8.47873 -7.92990 -5.23430 -0.34271 0.12112 1.35556 1.46178 1.49015 1.52864 1.57325 2.29477 2.39723 2.56496 2.68895 3.40158 3.44454 3.45376 3.68246 3.72668 3.82530 3.84553 4.00359 4.10571 4.15433 4.25238 4.28246 4.40328 4.44498 4.55976 4.68607 4.70043 4.80685 4.81116 4.85161 4.89446 4.89680 4.93330 4.99998 5.02004 5.10106 5.16580 5.17990 5.22972 5.32960 5.39737 5.41281 5.49752 5.57200 5.60636 5.67750 5.74481 6.16389 6.26428 6.54930 6.83002 7.33093 7.40677 8.07456 8.31819 9.30243 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008875 B = 0.003583 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3154.263778 B = 7812.045417 C = 9922.645804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.055 4.055 3 C -0.136 4.136 4 C 0.061 3.939 5 N -0.371 5.371 6 C 0.147 3.853 7 N -0.450 5.450 8 C -0.119 4.119 9 C 0.599 3.401 10 O -0.561 6.561 11 N -0.698 5.698 12 C 0.147 3.853 13 H 0.068 0.932 14 C 0.145 3.855 15 N -0.743 5.743 16 C -0.244 4.244 17 H 0.080 0.920 18 C -0.077 4.077 19 N -0.970 5.970 20 Si 0.977 3.023 21 H -0.286 1.286 22 H -0.297 1.297 23 H -0.267 1.267 24 C -0.112 4.112 25 C -0.089 4.089 26 C -0.139 4.139 27 C -0.130 4.130 28 C 0.079 3.921 29 C -0.123 4.123 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.197 0.803 34 H 0.218 0.782 35 H 0.259 0.741 36 H 0.404 0.596 37 H 0.033 0.967 38 H 0.041 0.959 39 H 0.372 0.628 40 H 0.249 0.751 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.052 0.948 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.051 0.949 48 H 0.048 0.952 49 H 0.044 0.956 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.957 15.989 -15.925 26.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.059 4.059 3 C -0.156 4.156 4 C -0.060 4.060 5 N -0.042 5.042 6 C -0.131 4.131 7 N -0.165 5.165 8 C -0.250 4.250 9 C 0.388 3.612 10 O -0.441 6.441 11 N -0.347 5.347 12 C 0.043 3.957 13 H 0.086 0.914 14 C 0.018 3.982 15 N -0.385 5.385 16 C -0.376 4.376 17 H 0.097 0.903 18 C -0.269 4.269 19 N -0.621 5.621 20 Si 0.806 3.194 21 H -0.213 1.213 22 H -0.224 1.224 23 H -0.192 1.192 24 C -0.151 4.151 25 C -0.108 4.108 26 C -0.196 4.196 27 C -0.187 4.187 28 C -0.035 4.035 29 C -0.143 4.143 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.214 0.786 34 H 0.235 0.765 35 H 0.274 0.726 36 H 0.238 0.762 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.204 0.796 40 H 0.058 0.942 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.063 0.937 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.678 15.134 -15.909 25.355 hybrid contribution 0.563 0.259 1.194 1.345 sum -12.116 15.393 -14.715 24.500 Atomic orbital electron populations 1.20894 0.87696 1.04557 1.03781 1.20442 0.98717 0.91834 0.94937 1.21376 0.92314 1.00075 1.01810 1.22680 0.93785 0.88805 1.00696 1.43262 1.08471 1.06661 1.45785 1.25842 0.83396 0.93852 1.09990 1.69970 1.26216 1.06160 1.14111 1.20456 0.88764 0.93689 1.22117 1.16707 0.84836 0.84063 0.75627 1.90727 1.22556 1.77861 1.53003 1.45699 1.09239 1.06159 1.73577 1.21218 0.97911 0.79269 0.97351 0.91371 1.21116 0.94815 0.96212 0.86029 1.42536 1.35225 1.45185 1.15603 1.19663 1.05474 1.15114 0.97352 0.90254 1.25616 1.02345 0.99760 0.99148 1.69875 1.42378 1.31479 1.18346 0.85088 0.78765 0.78248 0.77319 1.21315 1.22400 1.19210 1.21951 0.98213 1.01265 0.93669 1.21056 0.94481 0.99868 0.95384 1.21794 1.01308 1.01798 0.94697 1.21727 0.96993 0.99388 1.00591 1.19387 0.93773 0.85846 1.04469 1.20581 0.89261 1.00738 1.03716 0.89672 0.88173 0.91352 0.78629 0.76506 0.72584 0.76170 0.94951 0.94166 0.79600 0.94246 0.91299 0.89627 0.92981 0.91786 0.92786 0.92866 0.92951 0.93284 0.93729 0.84505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.03 71.24 0.71 -0.52 16 2 C -0.06 -0.95 5.89 -19.78 -0.12 -1.07 16 3 C -0.14 -1.48 9.67 22.06 0.21 -1.27 16 4 C 0.06 0.77 10.95 83.23 0.91 1.68 16 5 N -0.37 -8.58 2.94 -350.65 -1.03 -9.61 16 6 C 0.15 3.65 12.73 179.97 2.29 5.95 16 7 N -0.45 -15.88 10.90 -187.24 -2.04 -17.92 16 8 C -0.12 -4.49 7.05 41.23 0.29 -4.20 16 9 C 0.60 24.39 6.33 86.34 0.55 24.94 16 10 O -0.56 -23.32 10.70 -4.57 -0.05 -23.37 16 11 N -0.70 -27.91 4.46 -446.84 -1.99 -29.90 16 12 C 0.15 5.60 2.33 44.99 0.10 5.70 16 13 H 0.07 2.90 5.92 -2.39 -0.01 2.89 16 14 C 0.15 6.18 5.82 86.38 0.50 6.68 16 15 N -0.74 -40.29 5.43 -343.45 -1.87 -42.15 16 16 C -0.24 -14.24 9.99 84.03 0.84 -13.40 16 17 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 18 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 19 N -0.97 -62.67 13.06 21.65 0.28 -62.39 16 20 Si 0.98 47.89 29.55 68.60 2.03 49.92 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 22 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 23 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 24 C -0.11 -3.40 4.36 30.59 0.13 -3.27 16 25 C -0.09 -2.67 2.38 -10.79 -0.03 -2.70 16 26 C -0.14 -3.29 9.19 71.98 0.66 -2.62 16 27 C -0.13 -3.99 8.03 71.98 0.58 -3.41 16 28 C 0.08 2.49 6.72 39.23 0.26 2.75 16 29 C -0.12 -3.32 9.38 22.30 0.21 -3.11 16 30 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.10 0.52 8.10 -2.39 -0.02 0.50 16 32 H 0.07 0.85 8.08 -2.39 -0.02 0.83 16 33 H 0.20 0.33 8.06 -2.91 -0.02 0.31 16 34 H 0.22 0.48 8.06 -2.91 -0.02 0.46 16 35 H 0.26 3.59 8.06 -2.91 -0.02 3.56 16 36 H 0.40 16.89 8.30 -92.71 -0.77 16.12 16 37 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 39 H 0.37 22.19 7.33 -92.71 -0.68 21.51 16 40 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.09 2.31 8.14 -2.39 -0.02 2.30 16 43 H 0.05 1.84 5.19 -2.39 -0.01 1.82 16 44 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 46 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.05 1.80 4.75 -2.39 -0.01 1.79 16 49 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 50 H 0.14 4.13 7.17 -2.91 -0.02 4.11 16 Total: -1.00 -81.95 401.30 3.43 -78.52 By element: Atomic # 1 Polarization: 49.39 SS G_CDS: -0.48 Total: 48.91 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 8.58 Total: 8.00 kcal Atomic # 7 Polarization: -155.33 SS G_CDS: -6.65 Total: -161.98 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.05 Total: -23.37 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Total: -81.95 3.43 -78.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667092860.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.243 kcal (2) G-P(sol) polarization free energy of solvation -81.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds