Wall clock time and date at job start Wed Apr 1 2020 03:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35832 * 118.70370 * 2 1 4 4 C 1.40835 * 120.56077 * 180.02562 * 3 2 1 5 5 C 1.38422 * 134.90054 * 180.02562 * 4 3 2 6 6 N 1.33897 * 107.84469 * 179.97438 * 5 4 3 7 7 H 0.97001 * 125.01575 * 179.97438 * 6 5 4 8 8 N 1.39974 * 109.96101 * 0.26380 * 6 5 4 9 9 C 1.31479 * 109.01734 * 359.54180 * 8 6 5 10 10 C 1.46669 * 134.99189 * 180.08440 * 9 8 6 11 11 C 1.47167 * 120.72845 * 0.40419 * 10 9 8 12 12 O 1.21647 * 119.99443 * 359.97438 * 11 10 9 13 13 N 1.34767 * 120.00201 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99842 * 179.97438 * 13 11 10 15 15 H 1.08992 * 109.47137 * 324.99921 * 14 13 11 16 16 C 1.53003 * 109.46886 * 205.00280 * 14 13 11 17 17 N 1.46495 * 109.47215 * 55.00058 * 16 14 13 18 18 C 1.36941 * 119.99886 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00393 * 359.97438 * 18 17 16 20 20 C 1.38820 * 119.99986 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99931 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99818 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47362 * 90.00108 * 22 20 18 24 24 H 1.48504 * 109.46891 * 210.00201 * 22 20 18 25 25 H 1.48502 * 109.47087 * 329.99874 * 22 20 18 26 26 C 1.52990 * 109.46969 * 85.00490 * 14 13 11 27 27 C 1.53005 * 109.47391 * 294.99476 * 26 14 13 28 28 C 1.52995 * 109.47562 * 175.00121 * 27 26 14 29 29 C 1.53003 * 109.47112 * 295.00792 * 27 26 14 30 30 C 1.38595 * 118.54813 * 180.37593 * 10 9 8 31 31 H 1.08999 * 109.47010 * 269.98067 * 1 2 3 32 32 H 1.09003 * 109.46989 * 29.97878 * 1 2 3 33 33 H 1.08994 * 109.47218 * 149.97760 * 1 2 3 34 34 H 1.08003 * 119.71961 * 0.04893 * 3 2 1 35 35 H 1.07994 * 126.07588 * 359.97438 * 5 4 3 36 36 H 0.97001 * 120.00300 * 0.02562 * 13 11 10 37 37 H 1.08998 * 109.47169 * 174.99994 * 16 14 13 38 38 H 1.08994 * 109.47226 * 294.99786 * 16 14 13 39 39 H 0.96998 * 120.00379 * 0.02562 * 17 16 14 40 40 H 0.97000 * 119.99746 * 180.02562 * 21 20 18 41 41 H 1.08997 * 109.47927 * 55.00051 * 26 14 13 42 42 H 1.09004 * 109.47147 * 175.00272 * 26 14 13 43 43 H 1.09010 * 109.46384 * 55.00225 * 27 26 14 44 44 H 1.09000 * 109.46655 * 60.00017 * 28 27 26 45 45 H 1.08999 * 109.47044 * 179.97438 * 28 27 26 46 46 H 1.08998 * 109.47153 * 300.00576 * 28 27 26 47 47 H 1.08996 * 109.46476 * 179.97438 * 29 27 26 48 48 H 1.09001 * 109.46526 * 299.99358 * 29 27 26 49 49 H 1.08997 * 109.47245 * 59.99131 * 29 27 26 50 50 H 1.07998 * 119.31695 * 179.97438 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1594 1.1914 0.0000 4 6 3.5670 1.2370 -0.0005 5 6 4.5118 2.2487 -0.0003 6 7 5.7233 1.6786 -0.0006 7 1 6.5652 2.1605 -0.0008 8 7 5.5956 0.2847 -0.0071 9 6 4.3186 -0.0285 -0.0010 10 6 3.5586 -1.2829 -0.0014 11 6 4.2509 -2.5816 -0.0014 12 8 5.4667 -2.6226 -0.0015 13 7 3.5380 -3.7252 -0.0013 14 6 4.2272 -5.0180 -0.0019 15 1 5.1406 -4.9425 -0.5917 16 6 3.3132 -6.0830 -0.6114 17 7 2.8804 -5.6512 -1.9426 18 6 2.0501 -6.4483 -2.6847 19 1 1.7147 -7.3954 -2.2886 20 6 1.6403 -6.0393 -3.9464 21 7 0.8427 -6.8057 -4.6598 22 14 2.2210 -4.4015 -4.6317 23 1 3.4885 -4.5992 -5.3798 24 1 1.1872 -3.8529 -5.5458 25 1 2.4489 -3.4502 -3.5144 26 6 4.5786 -5.4092 1.4348 27 6 5.5904 -4.4115 2.0022 28 6 5.8475 -4.7284 3.4767 29 6 6.9023 -4.5159 1.2217 30 6 2.1742 -1.2185 -0.0012 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8897 -0.5141 34 1 1.5938 2.1115 0.0008 35 1 4.3079 3.3092 0.0001 36 1 2.5685 -3.6925 -0.0016 37 1 3.8565 -7.0243 -0.6935 38 1 2.4408 -6.2216 0.0271 39 1 3.1818 -4.8007 -2.2986 40 1 0.5567 -6.5201 -5.5416 41 1 3.6759 -5.3983 2.0456 42 1 5.0111 -6.4097 1.4435 43 1 5.1933 -3.4003 1.9117 44 1 6.2445 -5.7396 3.5670 45 1 6.5687 -4.0179 3.8806 46 1 4.9129 -4.6541 4.0326 47 1 7.6228 -3.8048 1.6256 48 1 7.2992 -5.5270 1.3121 49 1 6.7190 -4.2901 0.1712 50 1 1.6022 -2.1346 -0.0020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698873816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:59 Heat of formation + Delta-G solvation = 63.130899 kcal Electronic energy + Delta-G solvation = -31076.451892 eV Core-core repulsion = 27105.372814 eV Total energy + Delta-G solvation = -3971.079078 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.39854 -39.81875 -37.65615 -36.55313 -35.02126 -33.49518 -32.60352 -31.60236 -31.09769 -30.31152 -29.03141 -26.85548 -26.61370 -25.72328 -24.62943 -22.79972 -21.99948 -21.23411 -20.54893 -19.88585 -19.54917 -18.35214 -17.71413 -17.17133 -16.64909 -15.85813 -15.61422 -15.05642 -14.92673 -14.51959 -14.45565 -14.10823 -14.03248 -13.73638 -13.58061 -13.33506 -13.22486 -13.08029 -12.70946 -12.32433 -12.18720 -12.08672 -12.01746 -11.95143 -11.76437 -11.59824 -11.38339 -11.18139 -11.05087 -10.83166 -10.62065 -10.43931 -10.34774 -10.24700 -10.13241 -9.99420 -9.58670 -9.38943 -8.96511 -8.90931 -8.60213 -7.68425 -7.23839 -5.76738 -3.12325 0.20010 1.62730 2.10224 2.48993 3.09866 3.39495 3.42806 3.45033 3.48648 3.89130 4.06056 4.33513 4.60473 4.74144 4.75221 4.91543 4.98331 5.12282 5.18824 5.22089 5.24815 5.34981 5.46416 5.51922 5.55448 5.56365 5.59627 5.69269 5.83112 5.88006 5.89805 5.94776 6.04328 6.05533 6.06629 6.13402 6.15289 6.22784 6.32551 6.43873 6.45524 6.50853 6.63938 6.65267 6.73388 6.85291 6.87931 6.95930 7.46654 7.88127 7.99457 8.42137 8.60284 9.21583 9.94009 10.13787 11.41476 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007647 B = 0.004658 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3660.846027 B = 6010.069451 C = 8206.546281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.131 4.131 3 C -0.021 4.021 4 C -0.214 4.214 5 C 0.083 3.917 6 N -0.433 5.433 7 H 0.443 0.557 8 N -0.266 5.266 9 C 0.136 3.864 10 C -0.111 4.111 11 C 0.554 3.446 12 O -0.516 6.516 13 N -0.713 5.713 14 C 0.134 3.866 15 H 0.092 0.908 16 C 0.149 3.851 17 N -0.755 5.755 18 C -0.245 4.245 19 H 0.091 0.909 20 C 0.008 3.992 21 N -0.933 5.933 22 Si 0.880 3.120 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.276 1.276 26 C -0.121 4.121 27 C -0.093 4.093 28 C -0.145 4.145 29 C -0.136 4.136 30 C -0.027 4.027 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.125 0.875 35 H 0.188 0.812 36 H 0.400 0.600 37 H 0.042 0.958 38 H 0.032 0.968 39 H 0.363 0.637 40 H 0.259 0.741 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.050 0.950 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.041 0.959 48 H 0.037 0.963 49 H 0.075 0.925 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.680 19.468 15.475 25.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.133 4.133 3 C -0.042 4.042 4 C -0.225 4.225 5 C -0.073 4.073 6 N -0.133 5.133 7 H 0.287 0.713 8 N -0.092 5.092 9 C -0.022 4.022 10 C -0.118 4.118 11 C 0.342 3.658 12 O -0.393 6.393 13 N -0.365 5.365 14 C 0.029 3.971 15 H 0.109 0.891 16 C 0.021 3.979 17 N -0.401 5.401 18 C -0.375 4.375 19 H 0.109 0.891 20 C -0.188 4.188 21 N -0.581 5.581 22 Si 0.710 3.290 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.202 1.202 26 C -0.160 4.160 27 C -0.112 4.112 28 C -0.202 4.202 29 C -0.193 4.193 30 C -0.049 4.049 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.143 0.857 35 H 0.205 0.795 36 H 0.236 0.764 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.196 0.804 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.061 0.939 48 H 0.056 0.944 49 H 0.094 0.906 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.666 18.721 15.395 25.138 hybrid contribution -0.523 1.836 -0.700 2.033 sum 6.143 20.557 14.695 26.005 Atomic orbital electron populations 1.20810 0.90625 1.03175 1.02270 1.19095 0.96519 0.92268 1.05408 1.20092 0.90822 0.97627 0.95623 1.19551 0.94789 0.91712 1.16410 1.22694 0.85250 0.98928 1.00476 1.46557 1.08007 1.06359 1.52381 0.71270 1.77855 1.16787 0.87230 1.27301 1.21490 0.90045 0.92958 0.97755 1.19958 0.91958 0.89958 1.09903 1.17854 0.87425 0.83450 0.77105 1.90818 1.12644 1.87100 1.48751 1.45941 1.10343 1.05344 1.74865 1.21429 0.96982 0.82332 0.96328 0.89057 1.20949 0.95334 0.94589 0.87019 1.42709 1.59187 1.22621 1.15580 1.19052 1.20195 1.01256 0.96950 0.89129 1.24633 0.99473 0.97858 0.96822 1.69699 1.38476 1.37607 1.12311 0.86624 0.78196 0.85150 0.79037 1.21163 1.21718 1.20167 1.22004 0.99089 0.99351 0.95536 1.21143 0.96215 1.00028 0.93773 1.21856 1.00746 1.00937 0.96708 1.21810 0.96005 0.99280 1.02226 1.21263 0.92439 0.98321 0.92926 0.91328 0.91652 0.91105 0.85682 0.79501 0.76416 0.94038 0.94999 0.80363 0.93067 0.91855 0.91037 0.90597 0.93133 0.93374 0.93359 0.93936 0.94379 0.90603 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.93 36.01 0.36 -0.59 16 2 C -0.13 -1.45 5.82 -105.23 -0.61 -2.06 16 3 C -0.02 -0.21 9.58 -39.46 -0.38 -0.59 16 4 C -0.21 -2.48 6.34 -105.21 -0.67 -3.15 16 5 C 0.08 0.67 12.08 -16.58 -0.20 0.47 16 6 N -0.43 -4.12 7.18 30.86 0.22 -3.90 16 7 H 0.44 2.44 8.96 -182.69 -1.64 0.80 16 8 N -0.27 -4.07 12.24 34.36 0.42 -3.65 16 9 C 0.14 2.09 7.28 -80.98 -0.59 1.50 16 10 C -0.11 -1.74 6.05 -102.74 -0.62 -2.36 16 11 C 0.55 9.47 6.32 -12.64 -0.08 9.39 16 12 O -0.52 -9.89 11.27 5.24 0.06 -9.83 16 13 N -0.71 -11.32 4.42 -54.96 -0.24 -11.56 16 14 C 0.13 2.18 2.33 -67.93 -0.16 2.02 16 15 H 0.09 1.67 5.92 -51.93 -0.31 1.36 16 16 C 0.15 2.79 5.82 -4.04 -0.02 2.77 16 17 N -0.75 -17.71 5.24 -59.91 -0.31 -18.02 16 18 C -0.24 -6.85 10.47 -15.05 -0.16 -7.01 16 19 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 20 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 21 N -0.93 -29.24 13.97 55.49 0.78 -28.47 16 22 Si 0.88 22.59 27.74 -169.99 -4.71 17.87 16 23 H -0.28 -7.45 7.11 56.52 0.40 -7.05 16 24 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 25 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 26 C -0.12 -1.67 4.36 -26.73 -0.12 -1.78 16 27 C -0.09 -1.32 2.38 -90.62 -0.22 -1.54 16 28 C -0.15 -1.76 9.19 37.16 0.34 -1.41 16 29 C -0.14 -2.04 8.03 37.16 0.30 -1.75 16 30 C -0.03 -0.35 9.08 -39.20 -0.36 -0.70 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.47 8.04 -51.93 -0.42 0.05 16 33 H 0.07 0.63 8.06 -51.93 -0.42 0.21 16 34 H 0.13 0.85 8.04 -52.48 -0.42 0.43 16 35 H 0.19 0.54 8.06 -52.49 -0.42 0.12 16 36 H 0.40 5.89 6.65 -40.82 -0.27 5.62 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.36 8.63 5.20 -40.82 -0.21 8.41 16 40 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 1.23 5.19 -51.92 -0.27 0.96 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.08 1.31 4.75 -51.93 -0.25 1.06 16 50 H 0.14 1.56 6.37 -52.49 -0.33 1.23 16 LS Contribution 396.37 15.07 5.97 5.97 Total: -1.00 -36.68 396.37 -9.87 -46.55 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -8.78 Total: 11.70 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -3.27 Total: -6.67 kcal Atomic # 7 Polarization: -66.46 SS G_CDS: 0.86 Total: -65.60 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.06 Total: -9.83 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.71 Total: 17.87 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.68 -9.87 -46.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698873816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.685 kcal (2) G-P(sol) polarization free energy of solvation -36.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds