Wall clock time and date at job start Wed Apr 1 2020 03:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35832 * 118.70370 * 2 1 4 4 C 1.40835 * 120.56077 * 180.02562 * 3 2 1 5 5 C 1.38422 * 134.90054 * 180.02562 * 4 3 2 6 6 N 1.33897 * 107.84469 * 179.97438 * 5 4 3 7 7 H 0.97001 * 125.01575 * 179.97438 * 6 5 4 8 8 N 1.39974 * 109.96101 * 0.26380 * 6 5 4 9 9 C 1.31479 * 109.01734 * 359.54180 * 8 6 5 10 10 C 1.46669 * 134.99189 * 180.08440 * 9 8 6 11 11 C 1.47167 * 120.72845 * 0.40419 * 10 9 8 12 12 O 1.21647 * 119.99443 * 359.97438 * 11 10 9 13 13 N 1.34767 * 120.00201 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99842 * 179.97438 * 13 11 10 15 15 H 1.08992 * 109.47137 * 324.99921 * 14 13 11 16 16 C 1.53003 * 109.46886 * 205.00280 * 14 13 11 17 17 N 1.46495 * 109.47215 * 55.00058 * 16 14 13 18 18 C 1.36941 * 119.99886 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00393 * 359.97438 * 18 17 16 20 20 C 1.38820 * 119.99986 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99931 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99818 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47362 * 90.00108 * 22 20 18 24 24 H 1.48504 * 109.46891 * 210.00201 * 22 20 18 25 25 H 1.48502 * 109.47087 * 329.99874 * 22 20 18 26 26 C 1.52990 * 109.46969 * 85.00490 * 14 13 11 27 27 C 1.53005 * 109.47391 * 294.99476 * 26 14 13 28 28 C 1.52995 * 109.47562 * 175.00121 * 27 26 14 29 29 C 1.53003 * 109.47112 * 295.00792 * 27 26 14 30 30 C 1.38595 * 118.54813 * 180.37593 * 10 9 8 31 31 H 1.08999 * 109.47010 * 269.98067 * 1 2 3 32 32 H 1.09003 * 109.46989 * 29.97878 * 1 2 3 33 33 H 1.08994 * 109.47218 * 149.97760 * 1 2 3 34 34 H 1.08003 * 119.71961 * 0.04893 * 3 2 1 35 35 H 1.07994 * 126.07588 * 359.97438 * 5 4 3 36 36 H 0.97001 * 120.00300 * 0.02562 * 13 11 10 37 37 H 1.08998 * 109.47169 * 174.99994 * 16 14 13 38 38 H 1.08994 * 109.47226 * 294.99786 * 16 14 13 39 39 H 0.96998 * 120.00379 * 0.02562 * 17 16 14 40 40 H 0.97000 * 119.99746 * 180.02562 * 21 20 18 41 41 H 1.08997 * 109.47927 * 55.00051 * 26 14 13 42 42 H 1.09004 * 109.47147 * 175.00272 * 26 14 13 43 43 H 1.09010 * 109.46384 * 55.00225 * 27 26 14 44 44 H 1.09000 * 109.46655 * 60.00017 * 28 27 26 45 45 H 1.08999 * 109.47044 * 179.97438 * 28 27 26 46 46 H 1.08998 * 109.47153 * 300.00576 * 28 27 26 47 47 H 1.08996 * 109.46476 * 179.97438 * 29 27 26 48 48 H 1.09001 * 109.46526 * 299.99358 * 29 27 26 49 49 H 1.08997 * 109.47245 * 59.99131 * 29 27 26 50 50 H 1.07998 * 119.31695 * 179.97438 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1594 1.1914 0.0000 4 6 3.5670 1.2370 -0.0005 5 6 4.5118 2.2487 -0.0003 6 7 5.7233 1.6786 -0.0006 7 1 6.5652 2.1605 -0.0008 8 7 5.5956 0.2847 -0.0071 9 6 4.3186 -0.0285 -0.0010 10 6 3.5586 -1.2829 -0.0014 11 6 4.2509 -2.5816 -0.0014 12 8 5.4667 -2.6226 -0.0015 13 7 3.5380 -3.7252 -0.0013 14 6 4.2272 -5.0180 -0.0019 15 1 5.1406 -4.9425 -0.5917 16 6 3.3132 -6.0830 -0.6114 17 7 2.8804 -5.6512 -1.9426 18 6 2.0501 -6.4483 -2.6847 19 1 1.7147 -7.3954 -2.2886 20 6 1.6403 -6.0393 -3.9464 21 7 0.8427 -6.8057 -4.6598 22 14 2.2210 -4.4015 -4.6317 23 1 3.4885 -4.5992 -5.3798 24 1 1.1872 -3.8529 -5.5458 25 1 2.4489 -3.4502 -3.5144 26 6 4.5786 -5.4092 1.4348 27 6 5.5904 -4.4115 2.0022 28 6 5.8475 -4.7284 3.4767 29 6 6.9023 -4.5159 1.2217 30 6 2.1742 -1.2185 -0.0012 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8897 -0.5141 34 1 1.5938 2.1115 0.0008 35 1 4.3079 3.3092 0.0001 36 1 2.5685 -3.6925 -0.0016 37 1 3.8565 -7.0243 -0.6935 38 1 2.4408 -6.2216 0.0271 39 1 3.1818 -4.8007 -2.2986 40 1 0.5567 -6.5201 -5.5416 41 1 3.6759 -5.3983 2.0456 42 1 5.0111 -6.4097 1.4435 43 1 5.1933 -3.4003 1.9117 44 1 6.2445 -5.7396 3.5670 45 1 6.5687 -4.0179 3.8806 46 1 4.9129 -4.6541 4.0326 47 1 7.6228 -3.8048 1.6256 48 1 7.2992 -5.5270 1.3121 49 1 6.7190 -4.2901 0.1712 50 1 1.6022 -2.1346 -0.0020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698873816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:58 Heat of formation + Delta-G solvation = 37.578417 kcal Electronic energy + Delta-G solvation = -31077.559931 eV Core-core repulsion = 27105.372814 eV Total energy + Delta-G solvation = -3972.187117 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.23653 -41.03483 -38.55154 -37.84194 -36.55287 -35.05854 -33.62874 -33.19974 -32.15471 -31.40739 -30.27573 -27.97949 -27.32308 -27.31181 -25.60642 -24.34807 -23.42730 -22.02640 -21.88101 -21.01933 -20.67056 -19.74948 -19.09670 -18.22983 -17.65117 -17.10136 -16.93259 -16.43834 -15.95024 -15.90441 -15.64725 -15.20903 -15.19320 -14.93736 -14.73721 -14.69405 -14.43217 -14.21471 -14.08061 -13.81691 -13.45659 -13.14513 -13.03702 -13.00581 -12.94868 -12.82091 -12.55335 -12.53977 -12.41428 -12.19348 -12.06743 -11.84960 -11.68495 -11.47727 -11.40116 -11.28030 -11.15246 -11.04585 -10.58799 -9.93800 -9.79665 -9.31496 -8.52911 -8.04153 -5.36236 -0.63731 0.79961 1.19471 1.32908 1.36537 1.41780 1.82501 2.08469 2.26063 2.44275 2.88569 3.26223 3.28663 3.46301 3.60437 3.84281 3.88875 4.06665 4.10366 4.13151 4.19472 4.33118 4.37224 4.44176 4.47542 4.55341 4.63133 4.71076 4.79350 4.87663 4.88021 4.92033 4.98205 4.98291 5.01880 5.07105 5.13746 5.16940 5.22728 5.30037 5.37939 5.39319 5.56852 5.63230 5.64975 5.67522 5.76308 5.89243 6.20150 6.27942 6.60534 6.67919 7.05912 7.38273 7.82079 8.00298 9.17329 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007647 B = 0.004658 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3660.846027 B = 6010.069451 C = 8206.546281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.162 4.162 3 C 0.008 3.992 4 C -0.248 4.248 5 C 0.131 3.869 6 N -0.424 5.424 7 H 0.459 0.541 8 N -0.335 5.335 9 C 0.111 3.889 10 C -0.165 4.165 11 C 0.551 3.449 12 O -0.547 6.547 13 N -0.711 5.711 14 C 0.144 3.856 15 H 0.069 0.931 16 C 0.149 3.851 17 N -0.757 5.757 18 C -0.228 4.228 19 H 0.067 0.933 20 C -0.051 4.051 21 N -0.978 5.978 22 Si 0.941 3.059 23 H -0.292 1.292 24 H -0.289 1.289 25 H -0.260 1.260 26 C -0.112 4.112 27 C -0.089 4.089 28 C -0.139 4.139 29 C -0.129 4.129 30 C -0.014 4.014 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.168 0.832 35 H 0.251 0.749 36 H 0.404 0.596 37 H 0.044 0.956 38 H 0.046 0.954 39 H 0.363 0.637 40 H 0.258 0.742 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.053 0.947 44 H 0.062 0.938 45 H 0.047 0.953 46 H 0.057 0.943 47 H 0.035 0.965 48 H 0.052 0.948 49 H 0.048 0.952 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.175 22.981 17.002 28.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.164 4.164 3 C -0.012 4.012 4 C -0.258 4.258 5 C -0.028 4.028 6 N -0.124 5.124 7 H 0.306 0.694 8 N -0.161 5.161 9 C -0.047 4.047 10 C -0.172 4.172 11 C 0.341 3.659 12 O -0.427 6.427 13 N -0.364 5.364 14 C 0.040 3.960 15 H 0.087 0.913 16 C 0.022 3.978 17 N -0.403 5.403 18 C -0.359 4.359 19 H 0.084 0.916 20 C -0.243 4.243 21 N -0.629 5.629 22 Si 0.770 3.230 23 H -0.219 1.219 24 H -0.215 1.215 25 H -0.185 1.185 26 C -0.151 4.151 27 C -0.108 4.108 28 C -0.196 4.196 29 C -0.187 4.187 30 C -0.036 4.036 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.186 0.814 35 H 0.267 0.733 36 H 0.241 0.759 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.195 0.805 40 H 0.067 0.933 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.054 0.946 48 H 0.071 0.929 49 H 0.067 0.933 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.191 22.236 16.972 28.650 hybrid contribution -0.329 0.885 -1.106 1.454 sum 5.862 23.121 15.865 28.647 Atomic orbital electron populations 1.20800 0.88790 1.03554 1.03164 1.19370 0.97857 0.91900 1.07245 1.20580 0.90413 0.98845 0.91364 1.20047 0.95964 0.91156 1.18617 1.23685 0.83396 1.00813 0.94872 1.46606 1.09652 1.05053 1.51114 0.69380 1.77753 1.17559 0.90172 1.30656 1.21764 0.90802 0.94265 0.97825 1.19916 0.93001 0.89449 1.14784 1.18221 0.87238 0.84238 0.76252 1.90785 1.13927 1.87585 1.50398 1.45887 1.10458 1.05041 1.74998 1.21231 0.95328 0.82002 0.97484 0.91295 1.21107 0.96195 0.95406 0.85054 1.42725 1.58506 1.22053 1.16970 1.19065 1.19341 1.00485 0.96975 0.91554 1.25274 1.00377 1.01214 0.97480 1.69842 1.40583 1.39668 1.12819 0.85628 0.77131 0.81699 0.78581 1.21863 1.21550 1.18456 1.21943 0.99688 0.99723 0.93750 1.21051 0.95549 0.98912 0.95238 1.21792 1.01379 1.01617 0.94856 1.21720 0.96530 0.99765 1.00646 1.21468 0.91635 0.99662 0.90843 0.90174 0.89819 0.92200 0.81442 0.73301 0.75914 0.93815 0.93594 0.80452 0.93302 0.90444 0.89765 0.92863 0.91864 0.93395 0.92358 0.94629 0.92945 0.93281 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 9.93 71.24 0.71 -0.82 16 2 C -0.16 -3.25 5.82 -20.26 -0.12 -3.36 16 3 C 0.01 0.13 9.58 22.35 0.21 0.35 16 4 C -0.25 -5.07 6.34 -20.25 -0.13 -5.20 16 5 C 0.13 1.53 12.08 84.42 1.02 2.55 16 6 N -0.42 -7.19 7.18 -56.29 -0.40 -7.59 16 7 H 0.46 4.04 8.96 -213.40 -1.91 2.13 16 8 N -0.33 -10.39 12.24 -45.22 -0.55 -10.94 16 9 C 0.11 3.42 7.28 43.75 0.32 3.74 16 10 C -0.16 -5.31 6.05 -18.64 -0.11 -5.42 16 11 C 0.55 19.79 6.32 86.59 0.55 20.33 16 12 O -0.55 -22.38 11.27 -4.18 -0.05 -22.42 16 13 N -0.71 -23.23 4.42 -446.05 -1.97 -25.21 16 14 C 0.14 4.77 2.33 44.99 0.10 4.87 16 15 H 0.07 2.62 5.92 -2.39 -0.01 2.61 16 16 C 0.15 5.56 5.82 86.38 0.50 6.07 16 17 N -0.76 -35.70 5.24 -343.46 -1.80 -37.50 16 18 C -0.23 -12.93 10.47 84.03 0.88 -12.05 16 19 H 0.07 4.05 8.06 -2.91 -0.02 4.03 16 20 C -0.05 -3.05 5.50 84.86 0.47 -2.58 16 21 N -0.98 -62.64 13.97 21.65 0.30 -62.33 16 22 Si 0.94 47.45 27.74 68.60 1.90 49.35 16 23 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 24 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 25 H -0.26 -12.23 6.52 99.48 0.65 -11.59 16 26 C -0.11 -3.03 4.36 30.59 0.13 -2.89 16 27 C -0.09 -2.54 2.38 -10.79 -0.03 -2.56 16 28 C -0.14 -3.19 9.19 71.98 0.66 -2.53 16 29 C -0.13 -4.00 8.03 71.98 0.58 -3.42 16 30 C -0.01 -0.35 9.08 22.52 0.20 -0.15 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 0.88 8.04 -2.39 -0.02 0.86 16 33 H 0.06 0.98 8.06 -2.39 -0.02 0.96 16 34 H 0.17 1.27 8.04 -2.91 -0.02 1.25 16 35 H 0.25 -0.41 8.06 -2.91 -0.02 -0.44 16 36 H 0.40 12.15 6.65 -92.71 -0.62 11.54 16 37 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.36 17.27 5.20 -92.71 -0.48 16.79 16 40 H 0.26 15.79 8.31 -92.71 -0.77 15.01 16 41 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 42 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.05 1.80 5.19 -2.38 -0.01 1.78 16 44 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.05 1.79 4.75 -2.39 -0.01 1.78 16 50 H 0.14 3.23 6.37 -2.91 -0.02 3.22 16 Total: -1.00 -84.96 396.37 1.30 -83.65 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: -2.08 Total: 36.08 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 5.95 Total: -3.09 kcal Atomic # 7 Polarization: -139.15 SS G_CDS: -4.43 Total: -143.58 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.05 Total: -22.42 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 1.90 Total: 49.35 kcal Total: -84.96 1.30 -83.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698873816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.233 kcal (2) G-P(sol) polarization free energy of solvation -84.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds