Wall clock time and date at job start Wed Apr 1 2020 03:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35825 * 118.70196 * 2 1 4 4 C 1.40841 * 120.55425 * 179.97438 * 3 2 1 5 5 C 1.38430 * 134.89365 * 180.02562 * 4 3 2 6 6 N 1.33891 * 107.84127 * 179.97438 * 5 4 3 7 7 H 0.97001 * 125.02042 * 179.97438 * 6 5 4 8 8 N 1.39980 * 109.96293 * 359.97438 * 6 5 4 9 9 C 1.31477 * 109.01796 * 0.02562 * 8 6 5 10 10 C 1.46664 * 134.99289 * 180.02562 * 9 8 6 11 11 C 1.47162 * 120.72559 * 359.95487 * 10 9 8 12 12 O 1.21648 * 119.99711 * 312.22300 * 11 10 9 13 13 N 1.34779 * 120.00154 * 132.22195 * 11 10 9 14 14 C 1.46491 * 119.99903 * 4.17770 * 13 11 10 15 15 C 1.46500 * 119.99718 * 184.17255 * 13 11 10 16 16 C 1.53010 * 109.46955 * 90.00247 * 15 13 11 17 17 C 1.53001 * 109.47072 * 299.99718 * 16 15 13 18 18 C 1.52999 * 109.46754 * 59.99940 * 16 15 13 19 19 C 1.52998 * 109.47096 * 179.97438 * 16 15 13 20 20 N 1.46496 * 109.47021 * 179.97438 * 19 16 15 21 21 C 1.36942 * 119.99994 * 180.02562 * 20 19 16 22 22 H 1.07996 * 119.99455 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99772 * 180.02562 * 21 20 19 24 24 N 1.31617 * 120.00467 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99854 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47099 * 59.99882 * 25 23 21 27 27 H 1.48495 * 109.47444 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.47340 * 300.00444 * 25 23 21 29 29 C 1.38595 * 118.54893 * 179.97438 * 10 9 8 30 30 H 1.09004 * 109.47312 * 90.00013 * 1 2 3 31 31 H 1.09003 * 109.47350 * 210.00246 * 1 2 3 32 32 H 1.09004 * 109.47176 * 329.99559 * 1 2 3 33 33 H 1.08000 * 119.72022 * 359.72236 * 3 2 1 34 34 H 1.07998 * 126.07945 * 359.87558 * 5 4 3 35 35 H 1.08999 * 109.47725 * 90.60589 * 14 13 11 36 36 H 1.09006 * 109.47032 * 210.60281 * 14 13 11 37 37 H 1.08999 * 109.47142 * 330.59934 * 14 13 11 38 38 H 1.08999 * 109.46741 * 209.99978 * 15 13 11 39 39 H 1.08998 * 109.47906 * 330.00183 * 15 13 11 40 40 H 1.09008 * 109.46877 * 60.00047 * 17 16 15 41 41 H 1.08996 * 109.46809 * 179.97438 * 17 16 15 42 42 H 1.08995 * 109.46714 * 300.00279 * 17 16 15 43 43 H 1.08999 * 109.47667 * 59.99825 * 18 16 15 44 44 H 1.09005 * 109.47175 * 180.02562 * 18 16 15 45 45 H 1.09000 * 109.47023 * 299.99891 * 18 16 15 46 46 H 1.08998 * 109.47662 * 300.00261 * 19 16 15 47 47 H 1.09007 * 109.46798 * 60.00045 * 19 16 15 48 48 H 0.97000 * 119.99769 * 0.02562 * 20 19 16 49 49 H 0.96996 * 120.00598 * 180.02562 * 24 23 21 50 50 H 1.08002 * 119.31359 * 180.02562 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1593 1.1914 0.0000 4 6 3.5670 1.2369 0.0005 5 6 4.5118 2.2486 0.0011 6 7 5.7233 1.6785 0.0020 7 1 6.5652 2.1603 0.0022 8 7 5.5955 0.2846 0.0026 9 6 4.3186 -0.0286 0.0016 10 6 3.5585 -1.2830 0.0020 11 6 4.2508 -2.5816 0.0029 12 8 5.1620 -2.7856 -0.7768 13 7 3.8754 -3.5448 0.8677 14 6 2.7201 -3.3333 1.7433 15 6 4.6226 -4.8033 0.9319 16 6 5.7486 -4.6760 1.9600 17 6 6.6911 -3.5439 1.5466 18 6 5.1516 -4.3666 3.3343 19 6 6.5285 -5.9905 2.0275 20 7 7.6070 -5.8684 3.0115 21 6 8.4440 -6.9269 3.2449 22 1 8.3092 -7.8514 2.7032 23 6 9.4655 -6.8113 4.1776 24 7 9.6294 -5.6847 4.8380 25 14 10.6076 -8.2549 4.4955 26 1 11.3093 -8.6171 3.2379 27 1 11.6062 -7.8781 5.5280 28 1 9.8157 -9.4170 4.9727 29 6 2.1741 -1.2186 0.0010 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 1.5937 2.1114 -0.0045 34 1 4.3080 3.3092 -0.0006 35 1 1.8182 -3.6935 1.2483 36 1 2.8658 -3.8794 2.6753 37 1 2.6168 -2.2696 1.9578 38 1 3.9511 -5.6098 1.2264 39 1 5.0478 -5.0238 -0.0472 40 1 6.1351 -2.6075 1.4988 41 1 7.4929 -3.4529 2.2793 42 1 7.1162 -3.7644 0.5675 43 1 4.4801 -5.1731 3.6288 44 1 5.9538 -4.2754 4.0668 45 1 4.5957 -3.4302 3.2865 46 1 5.8569 -6.7969 2.3222 47 1 6.9537 -6.2114 1.0484 48 1 7.7282 -5.0379 3.4976 49 1 10.3434 -5.6038 5.4895 50 1 1.6021 -2.1347 0.0016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700446471.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:36 Heat of formation + Delta-G solvation = 76.543415 kcal Electronic energy + Delta-G solvation = -30746.843347 eV Core-core repulsion = 26776.345879 eV Total energy + Delta-G solvation = -3970.497468 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.52003 -40.03388 -37.81014 -37.02611 -34.96471 -33.18703 -32.58905 -31.41913 -30.51297 -29.92985 -27.77200 -26.85736 -26.55409 -25.95925 -25.32164 -24.09230 -22.66184 -21.51578 -21.31789 -19.14075 -18.41734 -18.23231 -17.41732 -17.12220 -16.56423 -15.98752 -15.60135 -15.11166 -15.04214 -14.66514 -14.48612 -14.04047 -13.79834 -13.64021 -13.63348 -13.45573 -13.10180 -13.03856 -12.64531 -12.45103 -12.40304 -12.20755 -12.16041 -12.02133 -11.79118 -11.46357 -11.09564 -10.97036 -10.88336 -10.75529 -10.72326 -10.58300 -10.44892 -10.16490 -10.12834 -9.86789 -9.59482 -9.50541 -9.03213 -8.76128 -8.40909 -7.78930 -6.78643 -5.66189 -2.93246 0.15263 1.51733 2.03950 2.40205 2.83141 3.11035 3.50675 3.54496 3.55883 3.57584 3.94462 4.21404 4.48406 4.64252 4.68890 4.85352 4.98986 5.02035 5.11157 5.20011 5.20708 5.28599 5.32991 5.34984 5.46244 5.55414 5.65550 5.66445 5.68402 5.72013 5.85397 5.94994 6.05538 6.09428 6.13537 6.25128 6.30553 6.31431 6.42614 6.52399 6.59768 6.68768 6.76706 6.78753 6.87916 6.91494 7.07970 7.13986 7.35642 7.50146 7.79229 8.34708 8.53499 9.64221 10.24776 10.59683 11.57035 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017320 B = 0.002568 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.280295 B =10901.907621 C =11830.087018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.135 4.135 3 C -0.022 4.022 4 C -0.213 4.213 5 C 0.087 3.913 6 N -0.426 5.426 7 H 0.446 0.554 8 N -0.274 5.274 9 C 0.131 3.869 10 C -0.102 4.102 11 C 0.563 3.437 12 O -0.517 6.517 13 N -0.604 5.604 14 C 0.067 3.933 15 C 0.128 3.872 16 C -0.086 4.086 17 C -0.122 4.122 18 C -0.135 4.135 19 C 0.166 3.834 20 N -0.728 5.728 21 C -0.234 4.234 22 H 0.069 0.931 23 C -0.016 4.016 24 N -0.936 5.936 25 Si 0.906 3.094 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 C -0.038 4.038 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.125 0.875 34 H 0.190 0.810 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.040 0.960 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.065 0.935 45 H 0.045 0.955 46 H 0.017 0.983 47 H 0.019 0.981 48 H 0.385 0.615 49 H 0.254 0.746 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.489 19.159 -9.579 31.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.136 4.136 3 C -0.042 4.042 4 C -0.224 4.224 5 C -0.070 4.070 6 N -0.126 5.126 7 H 0.290 0.710 8 N -0.100 5.100 9 C -0.027 4.027 10 C -0.108 4.108 11 C 0.351 3.649 12 O -0.392 6.392 13 N -0.337 5.337 14 C -0.076 4.076 15 C 0.006 3.994 16 C -0.087 4.087 17 C -0.179 4.179 18 C -0.193 4.193 19 C 0.038 3.962 20 N -0.373 5.373 21 C -0.365 4.365 22 H 0.087 0.913 23 C -0.212 4.212 24 N -0.585 5.585 25 Si 0.738 3.262 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.214 1.214 29 C -0.061 4.061 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.143 0.857 34 H 0.207 0.793 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.035 0.965 47 H 0.037 0.963 48 H 0.220 0.780 49 H 0.064 0.936 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.662 18.390 -9.996 29.412 hybrid contribution 0.420 0.191 0.485 0.670 sum -20.242 18.581 -9.511 29.077 Atomic orbital electron populations 1.20769 0.90776 1.02774 1.02203 1.19038 0.96280 0.92275 1.06047 1.20071 0.90792 0.97636 0.95735 1.19524 0.94781 0.91550 1.16506 1.22740 0.85161 0.99030 1.00116 1.46502 1.08220 1.06058 1.51836 0.70970 1.77808 1.16823 0.87915 1.27451 1.21489 0.90155 0.92985 0.98069 1.19778 0.92261 0.89832 1.08949 1.17910 0.82987 0.83225 0.80825 1.90843 1.29158 1.80276 1.38945 1.47652 1.30852 1.16935 1.38262 1.22150 0.87635 1.02893 0.94971 1.21561 0.93336 0.83791 1.00739 1.21113 0.95092 0.97662 0.94866 1.21686 0.98569 0.96210 1.01457 1.21881 1.00881 0.99718 0.96779 1.20579 0.90008 0.92502 0.93148 1.42391 1.33379 1.15508 1.45985 1.19208 1.07117 0.92997 1.17224 0.91340 1.24712 0.99567 0.97221 0.99697 1.69651 1.34539 1.24882 1.29406 0.86270 0.80622 0.81908 0.77416 1.21372 1.21809 1.21381 1.21182 0.91965 0.98235 0.94679 0.91480 0.91541 0.91656 0.85721 0.79329 0.92744 0.90191 0.90757 0.90536 0.89669 0.94123 0.92341 0.92691 0.93258 0.91587 0.93586 0.96507 0.96306 0.78005 0.93614 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 9.93 36.00 0.36 -0.19 16 2 C -0.13 -1.08 5.82 -105.23 -0.61 -1.69 16 3 C -0.02 -0.17 9.58 -39.46 -0.38 -0.55 16 4 C -0.21 -2.16 6.34 -105.21 -0.67 -2.83 16 5 C 0.09 0.62 12.08 -16.58 -0.20 0.42 16 6 N -0.43 -3.94 7.18 30.86 0.22 -3.72 16 7 H 0.45 2.49 8.96 -182.69 -1.64 0.85 16 8 N -0.27 -4.12 12.67 34.35 0.44 -3.68 16 9 C 0.13 1.85 7.45 -80.99 -0.60 1.25 16 10 C -0.10 -1.38 5.10 -102.74 -0.52 -1.91 16 11 C 0.56 8.99 5.55 -12.64 -0.07 8.92 16 12 O -0.52 -10.33 15.15 5.24 0.08 -10.25 16 13 N -0.60 -8.28 2.40 -182.95 -0.44 -8.71 16 14 C 0.07 0.65 7.98 59.84 0.48 1.13 16 15 C 0.13 1.95 4.61 -4.04 -0.02 1.93 16 16 C -0.09 -1.56 0.60 -154.50 -0.09 -1.65 16 17 C -0.12 -2.49 7.03 37.16 0.26 -2.22 16 18 C -0.14 -2.31 7.05 37.16 0.26 -2.04 16 19 C 0.17 3.59 5.15 -4.04 -0.02 3.57 16 20 N -0.73 -19.37 5.01 -59.91 -0.30 -19.67 16 21 C -0.23 -6.84 9.99 -15.06 -0.15 -6.99 16 22 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 23 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 24 N -0.94 -29.32 13.06 55.49 0.72 -28.60 16 25 Si 0.91 23.26 29.55 -169.99 -5.02 18.24 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 C -0.04 -0.37 7.18 -39.20 -0.28 -0.65 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.28 8.06 -51.93 -0.42 -0.14 16 32 H 0.06 0.25 8.04 -51.93 -0.42 -0.16 16 33 H 0.12 0.60 8.04 -52.49 -0.42 0.18 16 34 H 0.19 0.38 8.06 -52.49 -0.42 -0.05 16 35 H 0.05 0.39 7.39 -51.93 -0.38 0.01 16 36 H 0.08 0.77 6.02 -51.93 -0.31 0.45 16 37 H 0.07 0.69 5.83 -51.93 -0.30 0.39 16 38 H 0.08 0.98 8.07 -51.93 -0.42 0.57 16 39 H 0.08 1.42 7.37 -51.93 -0.38 1.04 16 40 H 0.04 0.81 6.20 -51.92 -0.32 0.49 16 41 H 0.06 1.32 6.86 -51.93 -0.36 0.96 16 42 H 0.05 1.20 7.82 -51.93 -0.41 0.79 16 43 H 0.05 0.77 8.08 -51.93 -0.42 0.35 16 44 H 0.07 1.33 6.86 -51.93 -0.36 0.97 16 45 H 0.05 0.69 5.98 -51.93 -0.31 0.38 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 48 H 0.38 10.76 5.36 -40.82 -0.22 10.54 16 49 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 50 H 0.14 1.04 6.35 -52.49 -0.33 0.71 16 LS Contribution 393.20 15.07 5.93 5.93 Total: -1.00 -38.91 393.20 -9.39 -48.30 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -8.66 Total: 6.26 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -2.36 Total: -4.10 kcal Atomic # 7 Polarization: -65.02 SS G_CDS: 0.64 Total: -64.37 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.24 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -38.91 -9.39 -48.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700446471.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.842 kcal (2) G-P(sol) polarization free energy of solvation -38.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds