Wall clock time and date at job start Wed Apr 1 2020 03:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35825 * 118.70196 * 2 1 4 4 C 1.40841 * 120.55425 * 179.97438 * 3 2 1 5 5 C 1.38430 * 134.89365 * 180.02562 * 4 3 2 6 6 N 1.33891 * 107.84127 * 179.97438 * 5 4 3 7 7 H 0.97001 * 125.02042 * 179.97438 * 6 5 4 8 8 N 1.39980 * 109.96293 * 359.97438 * 6 5 4 9 9 C 1.31477 * 109.01796 * 0.02562 * 8 6 5 10 10 C 1.46664 * 134.99289 * 180.02562 * 9 8 6 11 11 C 1.47162 * 120.72559 * 359.95487 * 10 9 8 12 12 O 1.21648 * 119.99711 * 312.22300 * 11 10 9 13 13 N 1.34779 * 120.00154 * 132.22195 * 11 10 9 14 14 C 1.46491 * 119.99903 * 4.17770 * 13 11 10 15 15 C 1.46500 * 119.99718 * 184.17255 * 13 11 10 16 16 C 1.53010 * 109.46955 * 90.00247 * 15 13 11 17 17 C 1.53001 * 109.47072 * 299.99718 * 16 15 13 18 18 C 1.52999 * 109.46754 * 59.99940 * 16 15 13 19 19 C 1.52998 * 109.47096 * 179.97438 * 16 15 13 20 20 N 1.46496 * 109.47021 * 179.97438 * 19 16 15 21 21 C 1.36942 * 119.99994 * 180.02562 * 20 19 16 22 22 H 1.07996 * 119.99455 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99772 * 180.02562 * 21 20 19 24 24 N 1.31617 * 120.00467 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99854 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47099 * 59.99882 * 25 23 21 27 27 H 1.48495 * 109.47444 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.47340 * 300.00444 * 25 23 21 29 29 C 1.38595 * 118.54893 * 179.97438 * 10 9 8 30 30 H 1.09004 * 109.47312 * 90.00013 * 1 2 3 31 31 H 1.09003 * 109.47350 * 210.00246 * 1 2 3 32 32 H 1.09004 * 109.47176 * 329.99559 * 1 2 3 33 33 H 1.08000 * 119.72022 * 359.72236 * 3 2 1 34 34 H 1.07998 * 126.07945 * 359.87558 * 5 4 3 35 35 H 1.08999 * 109.47725 * 90.60589 * 14 13 11 36 36 H 1.09006 * 109.47032 * 210.60281 * 14 13 11 37 37 H 1.08999 * 109.47142 * 330.59934 * 14 13 11 38 38 H 1.08999 * 109.46741 * 209.99978 * 15 13 11 39 39 H 1.08998 * 109.47906 * 330.00183 * 15 13 11 40 40 H 1.09008 * 109.46877 * 60.00047 * 17 16 15 41 41 H 1.08996 * 109.46809 * 179.97438 * 17 16 15 42 42 H 1.08995 * 109.46714 * 300.00279 * 17 16 15 43 43 H 1.08999 * 109.47667 * 59.99825 * 18 16 15 44 44 H 1.09005 * 109.47175 * 180.02562 * 18 16 15 45 45 H 1.09000 * 109.47023 * 299.99891 * 18 16 15 46 46 H 1.08998 * 109.47662 * 300.00261 * 19 16 15 47 47 H 1.09007 * 109.46798 * 60.00045 * 19 16 15 48 48 H 0.97000 * 119.99769 * 0.02562 * 20 19 16 49 49 H 0.96996 * 120.00598 * 180.02562 * 24 23 21 50 50 H 1.08002 * 119.31359 * 180.02562 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1593 1.1914 0.0000 4 6 3.5670 1.2369 0.0005 5 6 4.5118 2.2486 0.0011 6 7 5.7233 1.6785 0.0020 7 1 6.5652 2.1603 0.0022 8 7 5.5955 0.2846 0.0026 9 6 4.3186 -0.0286 0.0016 10 6 3.5585 -1.2830 0.0020 11 6 4.2508 -2.5816 0.0029 12 8 5.1620 -2.7856 -0.7768 13 7 3.8754 -3.5448 0.8677 14 6 2.7201 -3.3333 1.7433 15 6 4.6226 -4.8033 0.9319 16 6 5.7486 -4.6760 1.9600 17 6 6.6911 -3.5439 1.5466 18 6 5.1516 -4.3666 3.3343 19 6 6.5285 -5.9905 2.0275 20 7 7.6070 -5.8684 3.0115 21 6 8.4440 -6.9269 3.2449 22 1 8.3092 -7.8514 2.7032 23 6 9.4655 -6.8113 4.1776 24 7 9.6294 -5.6847 4.8380 25 14 10.6076 -8.2549 4.4955 26 1 11.3093 -8.6171 3.2379 27 1 11.6062 -7.8781 5.5280 28 1 9.8157 -9.4170 4.9727 29 6 2.1741 -1.2186 0.0010 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 1.5937 2.1114 -0.0045 34 1 4.3080 3.3092 -0.0006 35 1 1.8182 -3.6935 1.2483 36 1 2.8658 -3.8794 2.6753 37 1 2.6168 -2.2696 1.9578 38 1 3.9511 -5.6098 1.2264 39 1 5.0478 -5.0238 -0.0472 40 1 6.1351 -2.6075 1.4988 41 1 7.4929 -3.4529 2.2793 42 1 7.1162 -3.7644 0.5675 43 1 4.4801 -5.1731 3.6288 44 1 5.9538 -4.2754 4.0668 45 1 4.5957 -3.4302 3.2865 46 1 5.8569 -6.7969 2.3222 47 1 6.9537 -6.2114 1.0484 48 1 7.7282 -5.0379 3.4976 49 1 10.3434 -5.6038 5.4895 50 1 1.6021 -2.1347 0.0016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700446471.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:35 Heat of formation + Delta-G solvation = 49.125116 kcal Electronic energy + Delta-G solvation = -30748.032293 eV Core-core repulsion = 26776.345879 eV Total energy + Delta-G solvation = -3971.686415 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.26588 -41.17076 -38.86535 -38.19186 -36.39387 -34.93651 -33.45989 -32.37085 -31.94648 -31.06999 -28.89397 -28.20560 -27.34369 -27.29014 -26.93542 -25.08448 -24.36722 -22.58310 -21.95040 -20.20815 -19.78355 -19.16964 -19.10472 -18.23489 -17.45688 -17.15811 -16.81588 -16.54338 -15.88996 -15.79693 -15.60738 -15.47430 -15.20712 -15.09831 -14.47877 -14.37891 -14.20215 -14.15468 -14.09675 -13.84501 -13.69927 -13.21666 -12.98049 -12.93639 -12.80459 -12.75813 -12.61284 -12.49814 -12.36287 -12.29551 -12.17711 -12.08266 -11.70341 -11.65318 -11.59333 -11.45630 -11.19319 -10.93797 -10.68968 -9.76754 -9.57378 -8.98818 -8.50250 -7.94859 -5.23329 -0.52751 0.84745 1.23194 1.44392 1.48917 1.54699 1.70087 1.90269 2.14457 2.55901 2.79721 3.26351 3.37740 3.52536 3.76436 3.81974 3.90317 3.94971 4.12571 4.22560 4.24246 4.35687 4.39425 4.46131 4.46369 4.56322 4.60571 4.64756 4.75445 4.79301 4.79782 4.87672 4.90590 4.95188 5.06818 5.08615 5.12665 5.13455 5.17179 5.23210 5.37070 5.38523 5.42906 5.46959 5.51384 5.60652 5.70427 5.95846 6.26275 6.26931 6.42972 6.62168 7.23827 7.32967 8.09906 8.34317 9.29010 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017320 B = 0.002568 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.280295 B =10901.907621 C =11830.087018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.154 4.154 3 C -0.001 4.001 4 C -0.242 4.242 5 C 0.127 3.873 6 N -0.424 5.424 7 H 0.457 0.543 8 N -0.358 5.358 9 C 0.105 3.895 10 C -0.160 4.160 11 C 0.559 3.441 12 O -0.576 6.576 13 N -0.601 5.601 14 C 0.060 3.940 15 C 0.136 3.864 16 C -0.076 4.076 17 C -0.101 4.101 18 C -0.124 4.124 19 C 0.165 3.835 20 N -0.740 5.740 21 C -0.245 4.245 22 H 0.075 0.925 23 C -0.079 4.079 24 N -0.972 5.972 25 Si 0.977 3.023 26 H -0.281 1.281 27 H -0.295 1.295 28 H -0.273 1.273 29 C -0.008 4.008 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.166 0.834 34 H 0.250 0.750 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.111 0.889 39 H 0.064 0.936 40 H 0.040 0.960 41 H 0.026 0.974 42 H 0.029 0.971 43 H 0.071 0.929 44 H 0.030 0.970 45 H 0.065 0.935 46 H 0.035 0.965 47 H 0.007 0.993 48 H 0.374 0.626 49 H 0.251 0.749 50 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.338 20.524 -9.370 34.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.156 4.156 3 C -0.021 4.021 4 C -0.252 4.252 5 C -0.032 4.032 6 N -0.125 5.125 7 H 0.304 0.696 8 N -0.185 5.185 9 C -0.051 4.051 10 C -0.166 4.166 11 C 0.349 3.651 12 O -0.457 6.457 13 N -0.333 5.333 14 C -0.081 4.081 15 C 0.012 3.988 16 C -0.078 4.078 17 C -0.159 4.159 18 C -0.181 4.181 19 C 0.038 3.962 20 N -0.383 5.383 21 C -0.376 4.376 22 H 0.093 0.907 23 C -0.271 4.271 24 N -0.623 5.623 25 Si 0.806 3.194 26 H -0.207 1.207 27 H -0.221 1.221 28 H -0.199 1.199 29 C -0.030 4.030 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.183 0.817 34 H 0.266 0.734 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.129 0.871 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.045 0.955 42 H 0.048 0.952 43 H 0.090 0.910 44 H 0.049 0.951 45 H 0.084 0.916 46 H 0.053 0.947 47 H 0.025 0.975 48 H 0.208 0.792 49 H 0.059 0.941 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -24.563 19.733 -9.790 32.994 hybrid contribution 1.529 -0.028 0.360 1.572 sum -23.034 19.705 -9.429 31.746 Atomic orbital electron populations 1.20790 0.88163 1.04097 1.02950 1.19400 0.98035 0.91575 1.06594 1.20581 0.89929 0.99313 0.92258 1.20035 0.96195 0.90618 1.18370 1.23733 0.83380 1.00982 0.95081 1.46528 1.09818 1.04788 1.51344 0.69597 1.77688 1.18384 0.90902 1.31571 1.21885 0.90638 0.94753 0.97853 1.19693 0.93664 0.88469 1.14800 1.18461 0.82281 0.84284 0.80071 1.90789 1.32015 1.81373 1.41473 1.47718 1.31424 1.15865 1.38260 1.22425 0.87218 1.03629 0.94838 1.21373 0.93087 0.85797 0.98506 1.21022 0.95296 0.94646 0.96825 1.21456 0.98060 0.97471 0.98874 1.21776 1.00079 1.01648 0.94616 1.20717 0.89331 0.94901 0.91245 1.42588 1.34404 1.14589 1.46732 1.19643 1.07426 0.93724 1.16854 0.90664 1.25603 1.01463 1.00069 0.99922 1.69832 1.35236 1.27067 1.30197 0.85156 0.78336 0.78800 0.77134 1.20739 1.22092 1.19927 1.21492 0.90463 1.00059 0.90987 0.90928 0.90693 0.89994 0.81701 0.73409 0.89279 0.89578 0.90269 0.87055 0.91755 0.94111 0.95492 0.95192 0.90969 0.95128 0.91583 0.94716 0.97496 0.79228 0.94067 0.82852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.59 9.93 71.24 0.71 0.12 16 2 C -0.15 -1.98 5.82 -20.26 -0.12 -2.10 16 3 C 0.00 -0.01 9.58 22.35 0.21 0.20 16 4 C -0.24 -4.42 6.34 -20.24 -0.13 -4.55 16 5 C 0.13 1.45 12.08 84.42 1.02 2.47 16 6 N -0.42 -7.78 7.18 -56.28 -0.40 -8.18 16 7 H 0.46 5.12 8.96 -213.40 -1.91 3.21 16 8 N -0.36 -11.54 12.67 -45.23 -0.57 -12.11 16 9 C 0.11 3.08 7.45 43.75 0.33 3.41 16 10 C -0.16 -4.45 5.10 -18.65 -0.10 -4.54 16 11 C 0.56 18.82 5.55 86.59 0.48 19.30 16 12 O -0.58 -25.19 15.15 -4.18 -0.06 -25.25 16 13 N -0.60 -16.42 2.40 -850.95 -2.04 -18.46 16 14 C 0.06 1.04 7.98 127.77 1.02 2.05 16 15 C 0.14 4.14 4.61 86.38 0.40 4.54 16 16 C -0.08 -2.87 0.60 -52.18 -0.03 -2.90 16 17 C -0.10 -4.49 7.03 71.98 0.51 -3.98 16 18 C -0.12 -4.23 7.05 71.98 0.51 -3.72 16 19 C 0.17 7.34 5.15 86.38 0.44 7.79 16 20 N -0.74 -40.83 5.01 -343.45 -1.72 -42.54 16 21 C -0.24 -14.57 9.99 84.03 0.84 -13.73 16 22 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 23 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 24 N -0.97 -62.82 13.06 21.65 0.28 -62.53 16 25 Si 0.98 48.51 29.55 68.60 2.03 50.53 16 26 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 27 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 28 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 29 C -0.01 -0.14 7.18 22.52 0.16 0.02 16 30 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.07 0.32 8.06 -2.39 -0.02 0.30 16 32 H 0.08 0.22 8.04 -2.39 -0.02 0.20 16 33 H 0.17 0.62 8.04 -2.91 -0.02 0.60 16 34 H 0.25 -0.44 8.06 -2.91 -0.02 -0.47 16 35 H 0.09 0.94 7.39 -2.39 -0.02 0.93 16 36 H 0.09 1.39 6.02 -2.38 -0.01 1.38 16 37 H 0.08 1.32 5.83 -2.39 -0.01 1.31 16 38 H 0.11 2.62 8.07 -2.39 -0.02 2.60 16 39 H 0.06 2.25 7.37 -2.39 -0.02 2.24 16 40 H 0.04 1.78 6.20 -2.38 -0.01 1.76 16 41 H 0.03 1.31 6.86 -2.39 -0.02 1.30 16 42 H 0.03 1.43 7.82 -2.39 -0.02 1.41 16 43 H 0.07 2.12 8.08 -2.39 -0.02 2.10 16 44 H 0.03 1.25 6.86 -2.38 -0.02 1.24 16 45 H 0.07 1.97 5.98 -2.39 -0.01 1.95 16 46 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 48 H 0.37 22.07 5.36 -92.71 -0.50 21.57 16 49 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 50 H 0.15 1.96 6.35 -2.91 -0.02 1.94 16 Total: -1.00 -93.47 393.20 2.80 -90.67 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: -1.43 Total: 27.81 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 6.72 Total: 0.06 kcal Atomic # 7 Polarization: -139.38 SS G_CDS: -4.45 Total: -143.83 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.06 Total: -25.25 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.53 kcal Total: -93.47 2.80 -90.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700446471.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.797 kcal (2) G-P(sol) polarization free energy of solvation -93.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds