Wall clock time and date at job start Wed Apr 1 2020 03:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39061 * 119.35687 * 2 1 4 4 C 1.35708 * 122.67408 * 179.97438 * 3 2 1 5 5 C 1.41012 * 120.59435 * 0.02562 * 4 3 2 6 6 N 1.32140 * 134.70096 * 180.02562 * 5 4 3 7 7 N 1.39983 * 108.88920 * 179.97438 * 6 5 4 8 8 H 0.96997 * 125.06740 * 179.97438 * 7 6 5 9 9 C 1.34243 * 109.87307 * 0.22886 * 7 6 5 10 10 C 1.37580 * 107.93034 * 359.63052 * 9 7 6 11 11 C 1.38461 * 119.35800 * 180.02562 * 2 1 3 12 12 C 1.47303 * 120.74018 * 359.97438 * 11 2 1 13 13 O 1.21625 * 119.99846 * 89.99373 * 12 11 2 14 14 N 1.34771 * 119.99994 * 269.99664 * 12 11 2 15 15 C 1.46496 * 120.00130 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47192 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.46780 * 180.02562 * 16 15 14 18 18 N 1.46505 * 109.46847 * 180.02562 * 17 16 15 19 19 C 1.36940 * 119.99566 * 270.00038 * 18 17 16 20 20 H 1.08008 * 119.99855 * 144.86114 * 19 18 17 21 21 C 1.38808 * 120.00354 * 324.85527 * 19 18 17 22 22 N 1.31623 * 120.00127 * 157.17153 * 21 19 18 23 23 Si 1.86796 * 120.00124 * 337.17283 * 21 19 18 24 24 H 1.48503 * 109.47411 * 95.35101 * 23 21 19 25 25 H 1.48500 * 109.47501 * 215.35478 * 23 21 19 26 26 H 1.48507 * 109.47005 * 335.35190 * 23 21 19 27 27 C 1.46494 * 120.00035 * 90.00043 * 18 17 16 28 28 C 1.52999 * 109.47180 * 121.90386 * 27 18 17 29 29 C 1.53005 * 109.47097 * 241.89833 * 27 18 17 30 30 H 1.09004 * 109.46693 * 90.00122 * 1 2 3 31 31 H 1.08993 * 109.47086 * 210.00025 * 1 2 3 32 32 H 1.08999 * 109.47540 * 330.00672 * 1 2 3 33 33 H 1.08002 * 118.66228 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.69984 * 180.02562 * 4 3 2 35 35 H 1.08002 * 126.03422 * 179.75630 * 9 7 6 36 36 H 0.97001 * 120.00051 * 359.97438 * 14 12 11 37 37 H 1.08997 * 109.47730 * 300.00828 * 15 14 12 38 38 H 1.09002 * 109.46682 * 60.00450 * 15 14 12 39 39 H 1.09000 * 109.46932 * 300.00177 * 16 15 14 40 40 H 1.08995 * 109.46910 * 60.00172 * 16 15 14 41 41 H 1.08998 * 109.47772 * 299.99715 * 17 16 15 42 42 H 1.09002 * 109.47164 * 60.00365 * 17 16 15 43 43 H 0.97001 * 120.00275 * 180.02562 * 22 21 19 44 44 H 1.08991 * 109.47201 * 1.90056 * 27 18 17 45 45 H 1.08997 * 109.47832 * 65.32201 * 28 27 18 46 46 H 1.09000 * 109.47206 * 185.32844 * 28 27 18 47 47 H 1.09008 * 109.46717 * 305.32615 * 28 27 18 48 48 H 1.08998 * 109.46958 * 55.18827 * 29 27 18 49 49 H 1.09001 * 109.46869 * 175.18840 * 29 27 18 50 50 H 1.09000 * 109.47438 * 295.19195 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2120 0.0000 4 6 3.5435 1.2906 0.0005 5 6 4.3302 0.1203 0.0005 6 7 5.6283 -0.1271 0.0014 7 7 5.8255 -1.5129 0.0014 8 1 6.6900 -1.9528 0.0016 9 6 4.6399 -2.1426 -0.0044 10 6 3.6519 -1.1852 0.0001 11 6 2.1858 -1.2068 -0.0005 12 6 1.4515 -2.4837 -0.0005 13 8 1.1478 -3.0106 -1.0539 14 7 1.1160 -3.0682 1.1666 15 6 0.3852 -4.3378 1.1666 16 6 0.1312 -4.7801 2.6092 17 6 -0.6315 -6.1064 2.6091 18 7 -0.8753 -6.5295 3.9903 19 6 0.0389 -7.3185 4.6362 20 1 0.2106 -7.1902 5.6948 21 6 0.7448 -8.2830 3.9304 22 7 1.8978 -8.7219 4.3891 23 14 0.0585 -8.9582 2.3297 24 1 0.6436 -8.2125 1.1865 25 1 0.4042 -10.3975 2.2108 26 1 -1.4182 -8.8014 2.3191 27 6 -2.0970 -6.1087 4.6805 28 6 -2.8772 -7.3438 5.1352 29 6 -1.7278 -5.2614 5.8999 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 1.6167 2.1281 -0.0004 34 1 4.0234 2.2581 0.0009 35 1 4.4885 -3.2119 -0.0094 36 1 1.3585 -2.6481 2.0067 37 1 -0.5676 -4.2087 0.6534 38 1 0.9751 -5.0965 0.6522 39 1 1.0839 -4.9092 3.1227 40 1 -0.4588 -4.0213 3.1232 41 1 -1.5842 -5.9778 2.0954 42 1 -0.0411 -6.8650 2.0952 43 1 2.3913 -9.3957 3.8957 44 1 -2.7132 -5.5193 4.0016 45 1 -2.2991 -7.8829 5.8857 46 1 -3.8302 -7.0341 5.5640 47 1 -3.0581 -7.9945 4.2795 48 1 -1.0998 -4.4276 5.5862 49 1 -2.6363 -4.8775 6.3641 50 1 -1.1844 -5.8755 6.6180 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714824496.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:24 Heat of formation + Delta-G solvation = 73.184831 kcal Electronic energy + Delta-G solvation = -29932.519450 eV Core-core repulsion = 25961.876343 eV Total energy + Delta-G solvation = -3970.643107 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.48945 -39.67315 -37.49744 -37.08436 -35.09797 -33.05786 -32.53623 -31.83746 -31.19019 -30.28900 -29.27584 -27.11736 -26.34304 -25.41876 -24.31173 -23.40439 -22.08813 -21.31934 -21.30669 -19.78624 -19.45053 -18.50186 -17.58951 -16.63264 -16.16122 -15.79419 -15.72629 -15.44671 -15.31995 -15.07734 -14.76243 -14.55166 -13.75641 -13.65558 -13.62389 -13.38947 -13.26746 -13.07441 -12.49569 -12.37277 -12.23083 -12.09464 -11.93179 -11.85866 -11.80046 -11.65258 -11.41978 -11.19076 -11.01819 -10.83816 -10.75367 -10.48299 -10.45212 -10.35716 -9.96439 -9.84223 -9.67961 -9.40275 -9.00728 -8.98759 -8.50739 -7.87739 -6.88527 -6.00852 -3.39487 0.18859 1.54261 2.02861 2.37106 2.57480 3.20047 3.29149 3.46607 3.47487 3.50378 3.94539 4.38177 4.50394 4.61056 4.70285 4.82453 4.86274 5.02231 5.14034 5.25361 5.29902 5.40146 5.45261 5.46570 5.52107 5.68573 5.76633 5.80539 5.84039 5.98939 6.00997 6.07065 6.11572 6.15114 6.19622 6.28775 6.29507 6.30525 6.49299 6.51173 6.54876 6.61673 6.68288 6.72732 6.77755 6.88242 7.06723 7.12801 7.26384 7.51760 8.03330 8.18493 8.37180 8.98158 9.71340 10.10693 11.14892 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012864 B = 0.002700 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.177812 B =10368.194983 C =11277.455988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.077 4.077 3 C -0.075 4.075 4 C -0.085 4.085 5 C 0.102 3.898 6 N -0.299 5.299 7 N -0.426 5.426 8 H 0.446 0.554 9 C 0.090 3.910 10 C -0.183 4.183 11 C -0.052 4.052 12 C 0.561 3.439 13 O -0.533 6.533 14 N -0.716 5.716 15 C 0.116 3.884 16 C -0.145 4.145 17 C 0.142 3.858 18 N -0.602 5.602 19 C -0.258 4.258 20 H 0.081 0.919 21 C 0.034 3.966 22 N -0.902 5.902 23 Si 0.874 3.126 24 H -0.286 1.286 25 H -0.304 1.304 26 H -0.269 1.269 27 C 0.166 3.834 28 C -0.152 4.152 29 C -0.153 4.153 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.189 0.811 36 H 0.403 0.597 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.054 0.946 43 H 0.262 0.738 44 H 0.049 0.951 45 H 0.060 0.940 46 H 0.036 0.964 47 H 0.046 0.954 48 H 0.046 0.954 49 H 0.037 0.963 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.661 18.417 -7.082 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.079 4.079 3 C -0.098 4.098 4 C -0.106 4.106 5 C -0.053 4.053 6 N -0.127 5.127 7 N -0.128 5.128 8 H 0.291 0.709 9 C -0.066 4.066 10 C -0.193 4.193 11 C -0.058 4.058 12 C 0.346 3.654 13 O -0.410 6.410 14 N -0.366 5.366 15 C -0.008 4.008 16 C -0.186 4.186 17 C 0.016 3.984 18 N -0.324 5.324 19 C -0.387 4.387 20 H 0.098 0.902 21 C -0.166 4.166 22 N -0.543 5.543 23 Si 0.705 3.295 24 H -0.214 1.214 25 H -0.232 1.232 26 H -0.194 1.194 27 C 0.060 3.940 28 C -0.211 4.211 29 C -0.212 4.212 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.205 0.795 36 H 0.238 0.762 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.055 0.945 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.056 0.944 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.765 18.401 -7.820 20.072 hybrid contribution -0.275 -1.060 -0.532 1.218 sum 1.489 17.341 -8.353 19.305 Atomic orbital electron populations 1.20861 0.90493 1.03147 1.02939 1.19608 0.96053 0.91249 1.00981 1.20383 0.93625 0.97281 0.98507 1.19889 0.92509 0.95388 1.02782 1.20847 0.90399 0.94425 0.99626 1.77672 1.15507 0.90113 1.29452 1.46307 1.08377 1.05303 1.52811 0.70917 1.22582 0.85161 0.99094 0.99782 1.20107 0.92161 0.92355 1.14677 1.20011 0.90178 0.92909 1.02714 1.18153 0.78867 0.84107 0.84261 1.90837 1.54487 1.64439 1.31280 1.46206 1.57725 1.24461 1.08251 1.21540 0.96038 0.84036 0.99156 1.22427 1.03005 0.99937 0.93220 1.21073 0.96804 0.93267 0.87290 1.44246 1.19442 1.57697 1.10970 1.18686 1.13836 1.10695 0.95452 0.90183 1.25394 0.96385 0.97062 0.97757 1.69872 1.12183 1.31749 1.40536 0.87008 0.80562 0.77509 0.84434 1.21441 1.23231 1.19435 1.20392 0.87237 0.93505 0.92866 1.22123 0.98155 0.99430 1.01410 1.22159 0.99619 0.99906 0.99509 0.90656 0.91427 0.90881 0.84957 0.85066 0.79451 0.76232 0.91692 0.91516 0.90521 0.92075 0.94109 0.92815 0.92841 0.93252 0.92096 0.94477 0.93479 0.93451 0.94379 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.58 36.00 0.34 -0.73 16 2 C -0.08 -0.82 5.91 -104.24 -0.62 -1.43 16 3 C -0.08 -0.67 9.45 -40.18 -0.38 -1.05 16 4 C -0.08 -0.84 10.02 -39.44 -0.40 -1.23 16 5 C 0.10 1.25 7.49 -83.08 -0.62 0.62 16 6 N -0.30 -3.64 12.71 33.24 0.42 -3.22 16 7 N -0.43 -4.01 7.20 30.75 0.22 -3.79 16 8 H 0.45 2.51 8.96 -182.69 -1.64 0.88 16 9 C 0.09 0.94 12.00 -16.74 -0.20 0.74 16 10 C -0.18 -2.28 6.35 -103.15 -0.65 -2.94 16 11 C -0.05 -0.67 5.80 -102.75 -0.60 -1.26 16 12 C 0.56 8.08 5.67 -12.58 -0.07 8.01 16 13 O -0.53 -9.64 17.11 5.26 0.09 -9.55 16 14 N -0.72 -9.43 5.54 -61.42 -0.34 -9.78 16 15 C 0.12 1.75 5.67 -4.04 -0.02 1.73 16 16 C -0.15 -2.41 5.65 -26.73 -0.15 -2.56 16 17 C 0.14 2.83 4.49 -4.04 -0.02 2.81 16 18 N -0.60 -13.13 2.06 -165.66 -0.34 -13.47 16 19 C -0.26 -6.71 8.74 -15.06 -0.13 -6.84 16 20 H 0.08 2.27 7.17 -52.48 -0.38 1.89 16 21 C 0.03 0.93 5.31 -17.43 -0.09 0.84 16 22 N -0.90 -26.54 13.97 55.49 0.78 -25.77 16 23 Si 0.87 21.61 24.97 -169.99 -4.24 17.36 16 24 H -0.29 -6.88 6.66 56.52 0.38 -6.51 16 25 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 26 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 27 C 0.17 3.09 3.36 -67.93 -0.23 2.86 16 28 C -0.15 -2.77 9.04 37.16 0.34 -2.43 16 29 C -0.15 -2.60 9.11 37.16 0.34 -2.26 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.68 7.02 -51.93 -0.36 0.32 16 32 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 33 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.19 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.40 4.58 8.46 -40.82 -0.35 4.23 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.04 0.74 7.90 -51.93 -0.41 0.33 16 42 H 0.05 1.20 2.98 -51.93 -0.15 1.05 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.05 0.83 7.78 -51.93 -0.40 0.43 16 45 H 0.06 1.20 7.80 -51.93 -0.41 0.80 16 46 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 48 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.06 1.06 7.25 -51.93 -0.38 0.69 16 LS Contribution 407.25 15.07 6.14 6.14 Total: -1.00 -33.71 407.25 -9.57 -43.28 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -9.13 Total: 3.92 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -3.16 Total: -5.13 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.74 Total: -56.02 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.24 Total: 17.36 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.71 -9.57 -43.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714824496.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.467 kcal (2) G-P(sol) polarization free energy of solvation -33.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds