Wall clock time and date at job start Wed Apr 1 2020 03:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39061 * 119.35687 * 2 1 4 4 C 1.35708 * 122.67408 * 179.97438 * 3 2 1 5 5 C 1.41012 * 120.59435 * 0.02562 * 4 3 2 6 6 N 1.32140 * 134.70096 * 180.02562 * 5 4 3 7 7 N 1.39983 * 108.88920 * 179.97438 * 6 5 4 8 8 H 0.96997 * 125.06740 * 179.97438 * 7 6 5 9 9 C 1.34243 * 109.87307 * 0.22886 * 7 6 5 10 10 C 1.37580 * 107.93034 * 359.63052 * 9 7 6 11 11 C 1.38461 * 119.35800 * 180.02562 * 2 1 3 12 12 C 1.47303 * 120.74018 * 359.97438 * 11 2 1 13 13 O 1.21625 * 119.99846 * 89.99373 * 12 11 2 14 14 N 1.34771 * 119.99994 * 269.99664 * 12 11 2 15 15 C 1.46496 * 120.00130 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47192 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.46780 * 180.02562 * 16 15 14 18 18 N 1.46505 * 109.46847 * 180.02562 * 17 16 15 19 19 C 1.36940 * 119.99566 * 270.00038 * 18 17 16 20 20 H 1.08008 * 119.99855 * 144.86114 * 19 18 17 21 21 C 1.38808 * 120.00354 * 324.85527 * 19 18 17 22 22 N 1.31623 * 120.00127 * 157.17153 * 21 19 18 23 23 Si 1.86796 * 120.00124 * 337.17283 * 21 19 18 24 24 H 1.48503 * 109.47411 * 95.35101 * 23 21 19 25 25 H 1.48500 * 109.47501 * 215.35478 * 23 21 19 26 26 H 1.48507 * 109.47005 * 335.35190 * 23 21 19 27 27 C 1.46494 * 120.00035 * 90.00043 * 18 17 16 28 28 C 1.52999 * 109.47180 * 121.90386 * 27 18 17 29 29 C 1.53005 * 109.47097 * 241.89833 * 27 18 17 30 30 H 1.09004 * 109.46693 * 90.00122 * 1 2 3 31 31 H 1.08993 * 109.47086 * 210.00025 * 1 2 3 32 32 H 1.08999 * 109.47540 * 330.00672 * 1 2 3 33 33 H 1.08002 * 118.66228 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.69984 * 180.02562 * 4 3 2 35 35 H 1.08002 * 126.03422 * 179.75630 * 9 7 6 36 36 H 0.97001 * 120.00051 * 359.97438 * 14 12 11 37 37 H 1.08997 * 109.47730 * 300.00828 * 15 14 12 38 38 H 1.09002 * 109.46682 * 60.00450 * 15 14 12 39 39 H 1.09000 * 109.46932 * 300.00177 * 16 15 14 40 40 H 1.08995 * 109.46910 * 60.00172 * 16 15 14 41 41 H 1.08998 * 109.47772 * 299.99715 * 17 16 15 42 42 H 1.09002 * 109.47164 * 60.00365 * 17 16 15 43 43 H 0.97001 * 120.00275 * 180.02562 * 22 21 19 44 44 H 1.08991 * 109.47201 * 1.90056 * 27 18 17 45 45 H 1.08997 * 109.47832 * 65.32201 * 28 27 18 46 46 H 1.09000 * 109.47206 * 185.32844 * 28 27 18 47 47 H 1.09008 * 109.46717 * 305.32615 * 28 27 18 48 48 H 1.08998 * 109.46958 * 55.18827 * 29 27 18 49 49 H 1.09001 * 109.46869 * 175.18840 * 29 27 18 50 50 H 1.09000 * 109.47438 * 295.19195 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2120 0.0000 4 6 3.5435 1.2906 0.0005 5 6 4.3302 0.1203 0.0005 6 7 5.6283 -0.1271 0.0014 7 7 5.8255 -1.5129 0.0014 8 1 6.6900 -1.9528 0.0016 9 6 4.6399 -2.1426 -0.0044 10 6 3.6519 -1.1852 0.0001 11 6 2.1858 -1.2068 -0.0005 12 6 1.4515 -2.4837 -0.0005 13 8 1.1478 -3.0106 -1.0539 14 7 1.1160 -3.0682 1.1666 15 6 0.3852 -4.3378 1.1666 16 6 0.1312 -4.7801 2.6092 17 6 -0.6315 -6.1064 2.6091 18 7 -0.8753 -6.5295 3.9903 19 6 0.0389 -7.3185 4.6362 20 1 0.2106 -7.1902 5.6948 21 6 0.7448 -8.2830 3.9304 22 7 1.8978 -8.7219 4.3891 23 14 0.0585 -8.9582 2.3297 24 1 0.6436 -8.2125 1.1865 25 1 0.4042 -10.3975 2.2108 26 1 -1.4182 -8.8014 2.3191 27 6 -2.0970 -6.1087 4.6805 28 6 -2.8772 -7.3438 5.1352 29 6 -1.7278 -5.2614 5.8999 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 1.6167 2.1281 -0.0004 34 1 4.0234 2.2581 0.0009 35 1 4.4885 -3.2119 -0.0094 36 1 1.3585 -2.6481 2.0067 37 1 -0.5676 -4.2087 0.6534 38 1 0.9751 -5.0965 0.6522 39 1 1.0839 -4.9092 3.1227 40 1 -0.4588 -4.0213 3.1232 41 1 -1.5842 -5.9778 2.0954 42 1 -0.0411 -6.8650 2.0952 43 1 2.3913 -9.3957 3.8957 44 1 -2.7132 -5.5193 4.0016 45 1 -2.2991 -7.8829 5.8857 46 1 -3.8302 -7.0341 5.5640 47 1 -3.0581 -7.9945 4.2795 48 1 -1.0998 -4.4276 5.5862 49 1 -2.6363 -4.8775 6.3641 50 1 -1.1844 -5.8755 6.6180 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714824496.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:22 Heat of formation + Delta-G solvation = 50.878276 kcal Electronic energy + Delta-G solvation = -29933.486734 eV Core-core repulsion = 25961.876343 eV Total energy + Delta-G solvation = -3971.610392 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.31015 -40.77947 -38.80731 -38.22510 -36.39357 -34.31194 -33.91873 -33.34036 -32.10491 -31.15820 -30.74006 -28.05432 -27.76216 -26.90865 -25.39711 -24.78692 -23.18200 -22.64072 -22.11314 -21.14865 -20.82109 -19.29067 -18.53598 -18.38712 -17.31859 -17.22572 -16.90211 -16.63026 -16.39772 -16.13405 -15.90844 -15.79224 -15.11306 -14.93054 -14.73454 -14.61732 -14.35879 -14.14881 -14.03513 -13.97376 -13.51269 -13.31063 -13.19017 -12.89036 -12.87633 -12.64952 -12.58256 -12.55078 -12.39344 -12.33355 -12.16065 -12.00748 -11.90852 -11.67268 -11.39140 -11.26014 -11.17293 -10.91324 -10.53271 -10.17572 -9.78135 -8.73649 -8.70013 -8.13372 -5.46357 -0.60963 0.74150 1.18793 1.30999 1.41314 1.43168 1.51698 1.70869 2.14517 2.45455 2.64974 3.09766 3.15873 3.36735 3.57006 3.80656 3.89807 4.07301 4.08913 4.17241 4.29682 4.31574 4.36536 4.41890 4.52914 4.55357 4.60372 4.72834 4.73109 4.76416 4.81722 4.84140 4.89697 4.97929 5.10565 5.17160 5.17613 5.21676 5.26675 5.29581 5.32424 5.36067 5.45366 5.52402 5.60028 5.66458 5.76793 6.02585 6.12096 6.27640 6.43553 6.45417 7.07109 7.09473 7.74232 8.13735 9.06814 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012864 B = 0.002700 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.177812 B =10368.194983 C =11277.455988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.069 4.069 3 C -0.071 4.071 4 C -0.089 4.089 5 C 0.084 3.916 6 N -0.323 5.323 7 N -0.414 5.414 8 H 0.460 0.540 9 C 0.086 3.914 10 C -0.206 4.206 11 C -0.082 4.082 12 C 0.570 3.430 13 O -0.575 6.575 14 N -0.705 5.705 15 C 0.126 3.874 16 C -0.126 4.126 17 C 0.133 3.867 18 N -0.612 5.612 19 C -0.229 4.229 20 H 0.047 0.953 21 C -0.021 4.021 22 N -0.952 5.952 23 Si 0.930 3.070 24 H -0.279 1.279 25 H -0.319 1.319 26 H -0.258 1.258 27 C 0.157 3.843 28 C -0.148 4.148 29 C -0.144 4.144 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.102 0.898 33 H 0.171 0.829 34 H 0.154 0.846 35 H 0.202 0.798 36 H 0.413 0.587 37 H 0.075 0.925 38 H 0.046 0.954 39 H 0.051 0.949 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.028 0.972 43 H 0.258 0.742 44 H 0.081 0.919 45 H 0.033 0.967 46 H 0.073 0.927 47 H 0.033 0.967 48 H 0.047 0.953 49 H 0.071 0.929 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.485 21.310 -7.651 22.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.071 4.071 3 C -0.093 4.093 4 C -0.110 4.110 5 C -0.070 4.070 6 N -0.152 5.152 7 N -0.117 5.117 8 H 0.308 0.692 9 C -0.070 4.070 10 C -0.217 4.217 11 C -0.088 4.088 12 C 0.357 3.643 13 O -0.455 6.455 14 N -0.356 5.356 15 C 0.002 3.998 16 C -0.166 4.166 17 C 0.008 3.992 18 N -0.335 5.335 19 C -0.359 4.359 20 H 0.065 0.935 21 C -0.217 4.217 22 N -0.597 5.597 23 Si 0.761 3.239 24 H -0.207 1.207 25 H -0.249 1.249 26 H -0.183 1.183 27 C 0.052 3.948 28 C -0.207 4.207 29 C -0.203 4.203 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.121 0.879 33 H 0.188 0.812 34 H 0.172 0.828 35 H 0.219 0.781 36 H 0.250 0.750 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.046 0.954 43 H 0.067 0.933 44 H 0.099 0.901 45 H 0.053 0.947 46 H 0.092 0.908 47 H 0.052 0.948 48 H 0.066 0.934 49 H 0.090 0.910 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.399 21.336 -8.376 22.925 hybrid contribution 0.342 -1.854 -0.276 1.905 sum -0.057 19.483 -8.652 21.318 Atomic orbital electron populations 1.20929 0.89322 1.04044 1.03170 1.19976 0.97007 0.91201 0.98911 1.20749 0.93477 0.97934 0.97183 1.20287 0.92956 0.95656 1.02055 1.21274 0.90491 0.95229 0.99970 1.77584 1.15837 0.91376 1.30372 1.46300 1.08938 1.04622 1.51880 0.69221 1.22838 0.85215 0.99630 0.99335 1.20362 0.92474 0.93151 1.15706 1.19929 0.90313 0.92615 1.05910 1.18378 0.78040 0.84355 0.83555 1.90806 1.56279 1.65746 1.32688 1.46053 1.57152 1.23658 1.08690 1.21300 0.96341 0.84344 0.97847 1.22132 1.01541 0.98914 0.94044 1.21175 0.98156 0.93873 0.86029 1.44410 1.20127 1.57323 1.11621 1.18525 1.13244 1.09963 0.94142 0.93514 1.25885 0.96766 0.98127 1.00896 1.69990 1.13877 1.33348 1.42512 0.86079 0.80344 0.75814 0.81634 1.20697 1.24890 1.18267 1.20696 0.86190 0.94136 0.93812 1.22078 0.99528 0.98819 1.00256 1.22053 1.00865 0.99111 0.98295 0.90662 0.92595 0.87899 0.81200 0.82844 0.78120 0.75029 0.90697 0.93575 0.93026 0.89816 0.91370 0.95428 0.93312 0.90129 0.94745 0.90796 0.94755 0.93369 0.90978 0.95290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 9.58 71.23 0.68 -1.14 16 2 C -0.07 -1.32 5.91 -19.62 -0.12 -1.44 16 3 C -0.07 -1.05 9.45 21.88 0.21 -0.85 16 4 C -0.09 -1.56 10.02 22.36 0.22 -1.34 16 5 C 0.08 1.99 7.49 42.11 0.32 2.30 16 6 N -0.32 -7.66 12.71 -48.76 -0.62 -8.28 16 7 N -0.41 -7.63 7.20 -56.62 -0.41 -8.04 16 8 H 0.46 4.99 8.96 -213.40 -1.91 3.08 16 9 C 0.09 1.80 12.00 84.17 1.01 2.81 16 10 C -0.21 -5.07 6.35 -18.91 -0.12 -5.19 16 11 C -0.08 -2.01 5.80 -18.65 -0.11 -2.12 16 12 C 0.57 16.12 5.67 86.63 0.49 16.62 16 13 O -0.58 -20.81 17.11 -4.11 -0.07 -20.88 16 14 N -0.70 -17.90 5.54 -466.50 -2.59 -20.49 16 15 C 0.13 3.66 5.67 86.38 0.49 4.15 16 16 C -0.13 -3.98 5.65 30.59 0.17 -3.81 16 17 C 0.13 5.06 4.49 86.38 0.39 5.45 16 18 N -0.61 -25.98 2.06 -678.03 -1.40 -27.38 16 19 C -0.23 -12.08 8.74 84.03 0.73 -11.35 16 20 H 0.05 2.76 7.17 -2.91 -0.02 2.74 16 21 C -0.02 -1.20 5.31 84.86 0.45 -0.75 16 22 N -0.95 -58.24 13.97 21.65 0.30 -57.94 16 23 Si 0.93 45.58 24.97 68.60 1.71 47.29 16 24 H -0.28 -13.18 6.66 99.48 0.66 -12.52 16 25 H -0.32 -16.28 7.11 99.48 0.71 -15.57 16 26 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 27 C 0.16 5.38 3.36 44.99 0.15 5.54 16 28 C -0.15 -5.06 9.04 71.98 0.65 -4.41 16 29 C -0.14 -4.56 9.11 71.98 0.66 -3.90 16 30 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.06 1.00 7.02 -2.39 -0.02 0.99 16 32 H 0.10 0.96 8.07 -2.39 -0.02 0.94 16 33 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 34 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 35 H 0.20 3.43 8.06 -2.91 -0.02 3.41 16 36 H 0.41 8.88 8.46 -92.71 -0.78 8.10 16 37 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.07 2.23 7.90 -2.39 -0.02 2.21 16 42 H 0.03 1.21 2.98 -2.39 -0.01 1.21 16 43 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 44 H 0.08 2.32 7.78 -2.39 -0.02 2.30 16 45 H 0.03 1.33 7.80 -2.39 -0.02 1.31 16 46 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 47 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 48 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.07 1.78 8.14 -2.39 -0.02 1.77 16 50 H 0.03 1.05 7.25 -2.39 -0.02 1.04 16 Total: -1.00 -75.90 407.25 1.44 -74.46 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -1.77 Total: 20.68 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 6.28 Total: 0.57 kcal Atomic # 7 Polarization: -117.41 SS G_CDS: -4.71 Total: -122.12 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.07 Total: -20.88 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.71 Total: 47.29 kcal Total: -75.90 1.44 -74.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714824496.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.342 kcal (2) G-P(sol) polarization free energy of solvation -75.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds