Wall clock time and date at job start Wed Apr 1 2020 03:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.40568 * 120.13338 * 2 1 4 4 C 1.34847 * 120.34205 * 179.97438 * 3 2 1 5 5 N 1.36684 * 120.63895 * 359.97438 * 4 3 2 6 6 C 1.36199 * 132.29360 * 180.36159 * 5 4 3 7 7 C 1.36579 * 107.09267 * 180.11382 * 6 5 4 8 8 C 1.47584 * 125.91879 * 179.84025 * 7 6 5 9 9 O 1.21595 * 119.99535 * 359.71514 * 8 7 6 10 10 N 1.34770 * 120.00301 * 179.71209 * 8 7 6 11 11 C 1.46501 * 120.00255 * 179.72170 * 10 8 7 12 12 C 1.53003 * 109.47103 * 180.27651 * 11 10 8 13 13 C 1.53000 * 109.46905 * 180.02562 * 12 11 10 14 14 N 1.46497 * 109.47166 * 179.97438 * 13 12 11 15 15 C 1.36936 * 120.00115 * 270.00456 * 14 13 12 16 16 H 1.08001 * 119.99985 * 141.91672 * 15 14 13 17 17 C 1.38810 * 119.99843 * 321.90804 * 15 14 13 18 18 N 1.31618 * 120.00139 * 338.45441 * 17 15 14 19 19 Si 1.86802 * 119.99801 * 158.45758 * 17 15 14 20 20 H 1.48491 * 109.47280 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47094 * 120.00430 * 19 17 15 22 22 H 1.48502 * 109.46866 * 239.99942 * 19 17 15 23 23 C 1.46507 * 119.99775 * 89.99967 * 14 13 12 24 24 C 1.53000 * 109.46765 * 122.24333 * 23 14 13 25 25 C 1.53006 * 109.46887 * 242.23864 * 23 14 13 26 26 N 1.34586 * 108.16245 * 359.57501 * 7 6 5 27 27 C 1.32235 * 109.02554 * 0.26617 * 26 7 6 28 28 C 1.35893 * 120.13264 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46477 * 90.00247 * 1 2 3 30 30 H 1.09001 * 109.46875 * 210.00032 * 1 2 3 31 31 H 1.08994 * 109.47318 * 330.00252 * 1 2 3 32 32 H 1.07995 * 119.83003 * 359.95965 * 3 2 1 33 33 H 1.08000 * 119.68103 * 179.97438 * 4 3 2 34 34 H 1.07999 * 126.45097 * 359.94646 * 6 5 4 35 35 H 0.97001 * 120.00130 * 0.02562 * 10 8 7 36 36 H 1.09000 * 109.47300 * 300.27823 * 11 10 8 37 37 H 1.09005 * 109.46603 * 60.27697 * 11 10 8 38 38 H 1.09000 * 109.47183 * 300.00244 * 12 11 10 39 39 H 1.08992 * 109.47106 * 60.00492 * 12 11 10 40 40 H 1.09000 * 109.47223 * 300.00003 * 13 12 11 41 41 H 1.08998 * 109.47252 * 59.99885 * 13 12 11 42 42 H 0.97003 * 120.00163 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.47227 * 2.24019 * 23 14 13 44 44 H 1.08995 * 109.47566 * 65.40422 * 24 23 14 45 45 H 1.09002 * 109.46531 * 185.40280 * 24 23 14 46 46 H 1.09000 * 109.47307 * 305.39647 * 24 23 14 47 47 H 1.09001 * 109.46694 * 60.44620 * 25 23 14 48 48 H 1.08997 * 109.46477 * 180.44131 * 25 23 14 49 49 H 1.08991 * 109.47312 * 300.44250 * 25 23 14 50 50 H 1.08003 * 120.33269 * 0.05446 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2128 1.2157 0.0000 4 6 3.5612 1.2206 0.0005 5 7 4.2621 0.0471 0.0016 6 6 5.5970 -0.2231 0.0086 7 6 5.7314 -1.5823 0.0033 8 6 7.0060 -2.3263 0.0046 9 8 8.0618 -1.7232 0.0055 10 7 6.9997 -3.6739 0.0047 11 6 8.2649 -4.4124 -0.0003 12 6 7.9782 -5.9154 -0.0060 13 6 9.2996 -6.6866 -0.0105 14 7 9.0251 -8.1256 -0.0153 15 6 8.8983 -8.8024 1.1683 16 1 8.1617 -9.5862 1.2659 17 6 9.7167 -8.4813 2.2425 18 7 10.8604 -7.8633 2.0369 19 14 9.1946 -8.9264 3.9800 20 1 7.8772 -9.6103 3.9412 21 1 10.2053 -9.8314 4.5840 22 1 9.0864 -7.6905 4.7962 23 6 8.8862 -8.8405 -1.2866 24 6 9.9120 -9.9740 -1.3489 25 6 7.4754 -9.4231 -1.3925 26 7 4.5001 -2.1256 0.0027 27 6 3.6010 -1.1559 0.0017 28 6 2.1893 -1.1753 0.0005 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.6722 2.1506 -0.0007 33 1 4.0926 2.1609 0.0001 34 1 6.3982 0.5009 0.0143 35 1 6.1574 -4.1550 0.0036 36 1 8.8364 -4.1482 -0.8900 37 1 8.8390 -4.1554 0.8900 38 1 7.4067 -6.1796 0.8838 39 1 7.4041 -6.1723 -0.8961 40 1 9.8714 -6.4224 -0.9001 41 1 9.8734 -6.4295 0.8799 42 1 11.4324 -7.6392 2.7876 43 1 9.0572 -8.1499 -2.1124 44 1 9.6826 -10.7142 -0.5824 45 1 9.8741 -10.4446 -2.3313 46 1 10.9100 -9.5707 -1.1775 47 1 6.7449 -8.6148 -1.3560 48 1 7.3746 -9.9616 -2.3348 49 1 7.3017 -10.1076 -0.5624 50 1 1.6569 -2.1150 0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714824915.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:54 Heat of formation + Delta-G solvation = 40.522700 kcal Electronic energy + Delta-G solvation = -29022.862143 eV Core-core repulsion = 25050.802700 eV Total energy + Delta-G solvation = -3972.059443 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.93415 -40.66055 -38.64985 -38.42958 -36.40480 -35.28676 -34.27065 -33.20188 -31.85017 -30.97256 -30.42227 -28.17479 -27.72845 -27.16233 -25.54185 -24.38244 -23.54685 -22.76917 -22.37740 -21.32322 -21.08426 -19.20016 -18.25261 -18.03531 -17.53366 -17.26869 -16.95747 -16.71682 -16.44701 -16.03035 -15.86198 -15.61879 -15.55044 -15.02288 -14.93531 -14.73592 -14.50097 -14.24177 -14.08084 -13.41039 -13.33615 -13.24447 -13.16441 -12.95845 -12.85152 -12.78062 -12.67666 -12.52758 -12.49513 -12.33848 -12.12467 -11.92563 -11.70782 -11.63494 -11.57584 -11.31779 -11.29387 -11.15207 -10.46264 -10.25019 -9.89188 -8.90906 -8.47531 -7.75934 -5.37247 -0.37361 0.13891 0.94386 1.40335 1.43453 1.48126 1.56262 2.14461 2.23589 2.50280 2.53517 2.94398 3.29947 3.42322 3.62042 3.68484 3.77351 4.06145 4.12222 4.16565 4.22049 4.31460 4.37008 4.44647 4.52483 4.64257 4.67333 4.73629 4.79615 4.81304 4.88206 4.94081 4.98129 4.99951 5.08888 5.16111 5.17830 5.21491 5.23545 5.26934 5.36168 5.40830 5.48420 5.54470 5.62952 5.70013 5.76657 5.89432 5.91824 6.35145 6.55208 6.63887 7.07282 7.25029 7.95424 8.48311 9.19700 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.002031 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.031724 B =13781.276831 C =13884.853634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.047 4.047 3 C -0.127 4.127 4 C 0.047 3.953 5 N -0.369 5.369 6 C -0.015 4.015 7 C -0.023 4.023 8 C 0.594 3.406 9 O -0.573 6.573 10 N -0.702 5.702 11 C 0.133 3.867 12 C -0.122 4.122 13 C 0.153 3.847 14 N -0.593 5.593 15 C -0.244 4.244 16 H 0.055 0.945 17 C -0.037 4.037 18 N -0.916 5.916 19 Si 0.945 3.055 20 H -0.268 1.268 21 H -0.293 1.293 22 H -0.294 1.294 23 C 0.152 3.848 24 C -0.136 4.136 25 C -0.142 4.142 26 N -0.504 5.504 27 C 0.220 3.780 28 C -0.116 4.116 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.195 0.805 33 H 0.202 0.798 34 H 0.215 0.785 35 H 0.413 0.587 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.030 0.970 41 H 0.060 0.940 42 H 0.248 0.752 43 H 0.058 0.942 44 H 0.035 0.965 45 H 0.065 0.935 46 H 0.024 0.976 47 H 0.045 0.955 48 H 0.066 0.934 49 H 0.037 0.963 50 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.887 21.344 -7.194 32.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.054 4.054 3 C -0.147 4.147 4 C -0.072 4.072 5 N -0.040 5.040 6 C -0.151 4.151 7 C -0.155 4.155 8 C 0.380 3.620 9 O -0.453 6.453 10 N -0.352 5.352 11 C 0.009 3.991 12 C -0.162 4.162 13 C 0.026 3.974 14 N -0.314 5.314 15 C -0.375 4.375 16 H 0.072 0.928 17 C -0.234 4.234 18 N -0.561 5.561 19 Si 0.774 3.226 20 H -0.192 1.192 21 H -0.221 1.221 22 H -0.221 1.221 23 C 0.046 3.954 24 C -0.195 4.195 25 C -0.201 4.201 26 N -0.226 5.226 27 C -0.026 4.026 28 C -0.137 4.137 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.212 0.788 33 H 0.219 0.781 34 H 0.231 0.769 35 H 0.250 0.750 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.077 0.923 44 H 0.054 0.946 45 H 0.084 0.916 46 H 0.043 0.957 47 H 0.064 0.936 48 H 0.085 0.915 49 H 0.056 0.944 50 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -22.072 20.925 -7.100 31.232 hybrid contribution 0.424 0.005 1.256 1.326 sum -21.648 20.930 -5.844 30.673 Atomic orbital electron populations 1.20904 0.87162 1.04739 1.04075 1.20259 0.98755 0.91453 0.94899 1.21352 0.91670 1.00597 1.01045 1.22490 0.93941 0.88554 1.02262 1.42925 1.06568 1.08705 1.45836 1.22812 0.84708 0.97187 1.10418 1.20461 0.91990 0.92180 1.10871 1.17240 0.86631 0.82226 0.75864 1.90760 1.32392 1.69392 1.52799 1.45875 1.10768 1.05658 1.72896 1.21258 0.84934 0.91570 1.01333 1.22148 1.01030 0.91603 1.01462 1.20670 0.93251 0.83212 1.00289 1.44065 1.83194 1.02897 1.01233 1.19054 1.11859 1.16927 0.89650 0.92778 1.25761 0.94544 1.01264 1.01839 1.70134 1.09972 1.45722 1.30243 0.85565 0.78031 0.77068 0.81953 1.19248 1.22059 1.22148 1.20672 0.93878 0.93062 0.87819 1.21958 0.98629 0.98929 0.99962 1.22033 0.97253 1.00239 1.00584 1.70730 0.98211 1.30438 1.23242 1.21390 0.95359 0.80410 1.05468 1.20388 0.86698 1.01407 1.05169 0.89213 0.90645 0.88793 0.78769 0.78079 0.76851 0.75037 0.91459 0.93157 0.93169 0.91626 0.95205 0.92158 0.94299 0.92340 0.94560 0.91630 0.95706 0.93635 0.91472 0.94415 0.82566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.32 10.02 71.24 0.71 0.39 16 2 C -0.05 -0.43 5.88 -19.84 -0.12 -0.55 16 3 C -0.13 -0.74 9.67 22.06 0.21 -0.52 16 4 C 0.05 0.45 10.93 83.16 0.91 1.36 16 5 N -0.37 -7.20 2.93 -351.24 -1.03 -8.23 16 6 C -0.02 -0.36 11.47 83.63 0.96 0.60 16 7 C -0.02 -0.72 6.94 40.80 0.28 -0.44 16 8 C 0.59 21.17 7.82 86.71 0.68 21.85 16 9 O -0.57 -23.18 16.87 -4.01 -0.07 -23.25 16 10 N -0.70 -24.21 5.55 -466.21 -2.59 -26.80 16 11 C 0.13 4.94 5.67 86.38 0.49 5.43 16 12 C -0.12 -4.80 5.65 30.60 0.17 -4.63 16 13 C 0.15 7.16 5.27 86.38 0.46 7.61 16 14 N -0.59 -28.88 2.36 -678.02 -1.60 -30.48 16 15 C -0.24 -13.15 8.23 84.03 0.69 -12.46 16 16 H 0.05 2.94 6.95 -2.91 -0.02 2.92 16 17 C -0.04 -2.07 4.94 84.86 0.42 -1.65 16 18 N -0.92 -54.18 11.52 21.65 0.25 -53.93 16 19 Si 0.94 45.62 29.61 68.60 2.03 47.65 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 22 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 23 C 0.15 6.22 3.36 44.99 0.15 6.37 16 24 C -0.14 -5.50 9.03 71.98 0.65 -4.85 16 25 C -0.14 -5.06 9.20 71.98 0.66 -4.40 16 26 N -0.50 -15.21 11.01 -183.49 -2.02 -17.23 16 27 C 0.22 5.24 7.80 134.20 1.05 6.29 16 28 C -0.12 -1.91 9.75 22.45 0.22 -1.69 16 29 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.07 0.25 8.08 -2.39 -0.02 0.23 16 31 H 0.09 -0.07 8.09 -2.39 -0.02 -0.09 16 32 H 0.20 -0.50 8.06 -2.91 -0.02 -0.53 16 33 H 0.20 0.38 8.06 -2.91 -0.02 0.35 16 34 H 0.21 3.98 8.06 -2.91 -0.02 3.95 16 35 H 0.41 13.31 8.17 -92.71 -0.76 12.55 16 36 H 0.07 2.45 8.14 -2.39 -0.02 2.44 16 37 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 38 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.03 1.33 7.90 -2.39 -0.02 1.31 16 41 H 0.06 3.29 5.56 -2.39 -0.01 3.28 16 42 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 43 H 0.06 2.24 7.78 -2.39 -0.02 2.22 16 44 H 0.04 1.56 7.80 -2.39 -0.02 1.54 16 45 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.04 1.45 7.06 -2.39 -0.02 1.43 16 50 H 0.16 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -75.47 414.03 3.75 -71.72 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.18 Total: 21.83 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 8.60 Total: 18.71 kcal Atomic # 7 Polarization: -129.68 SS G_CDS: -6.99 Total: -136.67 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.07 Total: -23.25 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -75.47 3.75 -71.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714824915.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.244 kcal (2) G-P(sol) polarization free energy of solvation -75.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds