Wall clock time and date at job start Wed Apr 1 2020 03:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39744 * 119.42684 * 2 1 4 4 C 1.38947 * 119.28756 * 180.29959 * 3 2 1 5 5 C 1.47228 * 120.85770 * 179.74649 * 4 3 2 6 6 O 1.21633 * 119.99675 * 179.72221 * 5 4 3 7 7 N 1.34779 * 120.00111 * 359.72653 * 5 4 3 8 8 C 1.46500 * 120.00196 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.46967 * 325.00170 * 8 7 5 10 10 C 1.52997 * 109.47170 * 204.99986 * 8 7 5 11 11 N 1.46505 * 109.47212 * 54.99826 * 10 8 7 12 12 C 1.36936 * 119.99992 * 179.97438 * 11 10 8 13 13 H 1.08006 * 119.99834 * 0.02562 * 12 11 10 14 14 C 1.38801 * 120.00093 * 180.02562 * 12 11 10 15 15 N 1.31622 * 120.00145 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 120.00180 * 0.02562 * 14 12 11 17 17 H 1.48492 * 109.47586 * 89.99558 * 16 14 12 18 18 H 1.48505 * 109.47293 * 210.00502 * 16 14 12 19 19 H 1.48505 * 109.46772 * 329.99807 * 16 14 12 20 20 C 1.52994 * 109.46849 * 84.99779 * 8 7 5 21 21 C 1.53000 * 109.47356 * 295.00050 * 20 8 7 22 22 C 1.53002 * 109.47268 * 175.00333 * 21 20 8 23 23 C 1.53002 * 109.47070 * 295.00107 * 21 20 8 24 24 C 1.46548 * 118.28023 * 359.47832 * 4 3 2 25 25 N 1.31984 * 132.71947 * 180.27582 * 24 4 3 26 26 C 1.33740 * 109.17007 * 180.02562 * 25 24 4 27 27 C 1.34963 * 108.60631 * 359.97438 * 26 25 24 28 28 N 1.37005 * 107.14893 * 0.02562 * 27 26 25 29 29 C 1.35105 * 119.42733 * 179.76603 * 2 1 3 30 30 H 1.09003 * 109.47072 * 270.23757 * 1 2 3 31 31 H 1.09001 * 109.47191 * 30.23285 * 1 2 3 32 32 H 1.08996 * 109.47155 * 150.23515 * 1 2 3 33 33 H 1.07996 * 120.35596 * 0.06926 * 3 2 1 34 34 H 0.96998 * 119.99752 * 359.97438 * 7 5 4 35 35 H 1.09002 * 109.47153 * 294.99818 * 10 8 7 36 36 H 1.09001 * 109.46832 * 175.00009 * 10 8 7 37 37 H 0.96996 * 119.99606 * 0.02562 * 11 10 8 38 38 H 0.97010 * 119.99864 * 180.02562 * 15 14 12 39 39 H 1.08996 * 109.47643 * 55.00002 * 20 8 7 40 40 H 1.09004 * 109.47057 * 175.00174 * 20 8 7 41 41 H 1.09002 * 109.47443 * 55.00279 * 21 20 8 42 42 H 1.09003 * 109.47377 * 59.99931 * 22 21 20 43 43 H 1.09005 * 109.47252 * 179.97438 * 22 21 20 44 44 H 1.08996 * 109.46698 * 299.99946 * 22 21 20 45 45 H 1.08997 * 109.47141 * 60.00336 * 23 21 20 46 46 H 1.09009 * 109.47128 * 179.97438 * 23 21 20 47 47 H 1.08993 * 109.47222 * 299.99795 * 23 21 20 48 48 H 1.08001 * 125.69706 * 180.02562 * 26 25 24 49 49 H 1.07999 * 126.42613 * 180.02562 * 27 26 25 50 50 H 1.08000 * 119.13908 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1936 1.2171 0.0000 4 6 3.5830 1.2138 -0.0063 5 6 4.3412 2.4758 -0.0121 6 8 5.5574 2.4546 -0.0125 7 7 3.6877 3.6546 -0.0169 8 6 4.4421 4.9104 -0.0221 9 1 5.3509 4.7907 0.5677 10 6 3.5842 6.0233 0.5830 11 7 3.1304 5.6199 1.9163 12 6 2.3433 6.4620 2.6556 13 1 2.0567 7.4234 2.2555 14 6 1.9139 6.0800 3.9190 15 7 1.1569 6.8892 4.6293 16 14 2.4102 4.4176 4.6113 17 1 3.6866 4.5533 5.3580 18 1 1.3501 3.9265 5.5280 19 1 2.5885 3.4510 3.4980 20 6 4.8124 5.2768 -1.4606 21 6 5.7714 4.2261 -2.0239 22 6 6.0438 4.5232 -3.4999 23 6 7.0874 4.2667 -1.2443 24 6 4.2742 -0.0784 -0.0011 25 7 5.5516 -0.4106 -0.0001 26 6 5.6587 -1.7437 0.0050 27 6 4.4182 -2.2754 0.0079 28 7 3.5312 -1.2312 0.0039 29 6 2.1708 -1.1767 0.0048 30 1 -0.3633 0.0043 1.0277 31 1 -0.3633 0.8879 -0.5174 32 1 -0.3633 -0.8921 -0.5102 33 1 1.6501 2.1504 0.0011 34 1 2.7179 3.6714 -0.0169 35 1 2.7196 6.2036 -0.0559 36 1 4.1751 6.9359 0.6609 37 1 3.3882 4.7566 2.2757 38 1 0.8571 6.6224 5.5125 39 1 3.9101 5.3094 -2.0711 40 1 5.2955 6.2539 -1.4738 41 1 5.3233 3.2370 -1.9291 42 1 6.4920 5.5123 -3.5948 43 1 6.7274 3.7749 -3.9011 44 1 5.1063 4.4943 -4.0552 45 1 6.8934 4.0550 -0.1929 46 1 7.7705 3.5178 -1.6454 47 1 7.5355 5.2557 -1.3393 48 1 6.5834 -2.3016 0.0074 49 1 4.1711 -3.3267 0.0125 50 1 1.6076 -2.0982 0.0090 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715396217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:24 Heat of formation + Delta-G solvation = 64.678389 kcal Electronic energy + Delta-G solvation = -31212.452756 eV Core-core repulsion = 27241.440782 eV Total energy + Delta-G solvation = -3971.011974 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.84875 -39.96142 -37.93230 -36.71517 -35.07562 -33.86570 -33.38230 -32.27503 -31.28516 -29.66075 -28.68463 -26.97784 -26.85796 -25.77207 -24.80936 -22.81145 -22.26021 -21.69688 -20.99256 -20.30233 -19.65981 -18.19110 -17.74145 -17.33928 -16.55638 -16.13638 -15.83835 -15.56927 -15.26213 -14.59340 -14.26828 -14.19806 -14.14081 -13.83558 -13.79736 -13.61253 -13.35895 -13.15729 -12.87235 -12.76189 -12.44593 -12.30537 -12.23696 -12.05977 -11.99003 -11.63173 -11.61591 -11.25724 -11.09272 -10.91201 -10.84879 -10.48656 -10.29654 -10.18283 -10.10990 -10.04000 -9.63424 -9.53921 -8.96285 -8.87443 -8.70167 -8.05932 -7.28921 -5.81216 -3.17139 0.14040 1.06980 2.30546 2.59631 2.90942 3.29416 3.33628 3.39382 3.44097 3.65018 3.92993 4.11621 4.32880 4.48560 4.55437 4.63097 4.86157 5.00554 5.06650 5.17372 5.18643 5.20049 5.26833 5.29080 5.45610 5.49750 5.51280 5.52717 5.60753 5.65364 5.71063 5.81861 5.86247 5.90082 6.01594 6.03557 6.10108 6.13866 6.18142 6.29083 6.38373 6.46436 6.48685 6.58126 6.70132 6.80884 6.85187 6.87995 7.73164 7.83002 7.94659 8.37491 8.46233 9.16670 9.89008 10.08566 11.36942 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007702 B = 0.004712 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3634.420097 B = 5941.041608 C = 8147.282943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.117 4.117 3 C -0.055 4.055 4 C -0.083 4.083 5 C 0.556 3.444 6 O -0.495 6.495 7 N -0.710 5.710 8 C 0.134 3.866 9 H 0.093 0.907 10 C 0.149 3.851 11 N -0.755 5.755 12 C -0.245 4.245 13 H 0.091 0.909 14 C 0.008 3.992 15 N -0.932 5.932 16 Si 0.880 3.120 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.278 1.278 20 C -0.121 4.121 21 C -0.093 4.093 22 C -0.145 4.145 23 C -0.137 4.137 24 C 0.252 3.748 25 N -0.457 5.457 26 C 0.025 3.975 27 C -0.101 4.101 28 N -0.370 5.370 29 C 0.072 3.928 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.151 0.849 34 H 0.400 0.600 35 H 0.033 0.967 36 H 0.043 0.957 37 H 0.363 0.637 38 H 0.260 0.740 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.050 0.950 43 H 0.048 0.952 44 H 0.047 0.953 45 H 0.075 0.925 46 H 0.044 0.956 47 H 0.038 0.962 48 H 0.181 0.819 49 H 0.183 0.817 50 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.223 -17.673 -15.357 23.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.120 4.120 3 C -0.079 4.079 4 C -0.089 4.089 5 C 0.341 3.659 6 O -0.370 6.370 7 N -0.363 5.363 8 C 0.030 3.970 9 H 0.111 0.889 10 C 0.021 3.979 11 N -0.401 5.401 12 C -0.375 4.375 13 H 0.109 0.891 14 C -0.188 4.188 15 N -0.580 5.580 16 Si 0.711 3.289 17 H -0.210 1.210 18 H -0.217 1.217 19 H -0.204 1.204 20 C -0.160 4.160 21 C -0.112 4.112 22 C -0.203 4.203 23 C -0.194 4.194 24 C 0.005 3.995 25 N -0.175 5.175 26 C -0.125 4.125 27 C -0.231 4.231 28 N -0.042 5.042 29 C -0.051 4.051 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.169 0.831 34 H 0.235 0.765 35 H 0.050 0.950 36 H 0.061 0.939 37 H 0.196 0.804 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.094 0.906 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.198 0.802 49 H 0.200 0.800 50 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.680 -17.002 -15.287 23.020 hybrid contribution -0.944 -1.935 0.730 2.274 sum 1.736 -18.937 -14.557 23.949 Atomic orbital electron populations 1.20736 0.88418 1.03705 1.03450 1.19297 0.97672 0.91198 1.03845 1.21704 0.92254 0.98906 0.95038 1.20302 0.92240 0.90400 1.05988 1.17494 0.87632 0.82723 0.78004 1.90874 1.12208 1.86700 1.47197 1.45909 1.10442 1.05146 1.74838 1.21471 0.96163 0.82872 0.96510 0.88865 1.20957 0.95618 0.94321 0.86992 1.42711 1.62273 1.19719 1.15417 1.19047 1.22403 0.99146 0.96911 0.89088 1.24632 0.99696 0.97615 0.96813 1.69701 1.39687 1.36310 1.12313 0.86625 0.78048 0.85272 0.78988 1.21049 1.21740 1.20409 1.22013 0.99357 0.99273 0.95370 1.21146 0.96569 0.99572 0.93898 1.21856 1.00752 1.01033 0.96611 1.21815 0.95941 0.99477 1.02171 1.21536 0.86817 0.86170 1.05022 1.70830 1.13915 1.12701 1.20069 1.22683 0.97036 0.90556 1.02228 1.22647 0.89144 0.93009 1.18314 1.42854 1.05929 1.08825 1.46576 1.21404 0.81260 1.00292 1.02120 0.90240 0.90237 0.91081 0.83148 0.76461 0.94954 0.93887 0.80407 0.93034 0.91842 0.90884 0.90721 0.93085 0.93267 0.93412 0.90636 0.93728 0.94312 0.80209 0.80002 0.81958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 9.97 36.01 0.36 -0.30 16 2 C -0.12 -1.09 5.82 -105.17 -0.61 -1.70 16 3 C -0.06 -0.64 9.27 -38.76 -0.36 -1.00 16 4 C -0.08 -1.25 6.06 -102.63 -0.62 -1.87 16 5 C 0.56 9.17 6.32 -12.61 -0.08 9.09 16 6 O -0.49 -9.36 11.15 5.25 0.06 -9.30 16 7 N -0.71 -10.69 4.42 -54.95 -0.24 -10.93 16 8 C 0.13 2.09 2.33 -67.94 -0.16 1.94 16 9 H 0.09 1.64 5.92 -51.93 -0.31 1.34 16 10 C 0.15 2.69 5.82 -4.04 -0.02 2.67 16 11 N -0.76 -17.23 5.24 -59.91 -0.31 -17.55 16 12 C -0.25 -6.73 10.47 -15.06 -0.16 -6.89 16 13 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 14 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 15 N -0.93 -28.82 13.97 55.49 0.78 -28.05 16 16 Si 0.88 22.18 27.74 -169.99 -4.71 17.47 16 17 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 18 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 19 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 20 C -0.12 -1.60 4.36 -26.73 -0.12 -1.72 16 21 C -0.09 -1.29 2.38 -90.62 -0.22 -1.51 16 22 C -0.15 -1.71 9.19 37.16 0.34 -1.37 16 23 C -0.14 -2.02 8.03 37.16 0.30 -1.72 16 24 C 0.25 3.94 7.67 -154.14 -1.18 2.76 16 25 N -0.46 -7.68 10.70 -11.32 -0.12 -7.80 16 26 C 0.03 0.32 11.83 -17.88 -0.21 0.10 16 27 C -0.10 -1.04 11.76 -16.40 -0.19 -1.24 16 28 N -0.37 -4.48 2.94 -61.10 -0.18 -4.66 16 29 C 0.07 0.66 10.48 -16.75 -0.18 0.49 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 32 H 0.07 0.30 8.05 -51.93 -0.42 -0.12 16 33 H 0.15 1.48 6.48 -52.49 -0.34 1.14 16 34 H 0.40 5.44 6.70 -40.82 -0.27 5.17 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.36 8.38 5.20 -40.82 -0.21 8.16 16 38 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 1.18 5.19 -51.93 -0.27 0.91 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 1.28 4.75 -51.93 -0.25 1.03 16 46 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 47 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.18 1.61 8.06 -52.49 -0.42 1.19 16 49 H 0.18 1.10 8.06 -52.49 -0.42 0.67 16 50 H 0.16 0.86 8.04 -52.49 -0.42 0.44 16 LS Contribution 396.46 15.07 5.97 5.97 Total: -1.00 -35.85 396.46 -9.54 -45.39 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -7.57 Total: 11.58 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -3.20 Total: -2.12 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -0.08 Total: -68.99 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.06 Total: -9.30 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.47 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.85 -9.54 -45.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715396217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.072 kcal (2) G-P(sol) polarization free energy of solvation -35.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds