Wall clock time and date at job start Wed Apr 1 2020 03:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39744 * 119.42684 * 2 1 4 4 C 1.38947 * 119.28756 * 180.29959 * 3 2 1 5 5 C 1.47228 * 120.85770 * 179.74649 * 4 3 2 6 6 O 1.21633 * 119.99675 * 179.72221 * 5 4 3 7 7 N 1.34779 * 120.00111 * 359.72653 * 5 4 3 8 8 C 1.46500 * 120.00196 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.46967 * 325.00170 * 8 7 5 10 10 C 1.52997 * 109.47170 * 204.99986 * 8 7 5 11 11 N 1.46505 * 109.47212 * 54.99826 * 10 8 7 12 12 C 1.36936 * 119.99992 * 179.97438 * 11 10 8 13 13 H 1.08006 * 119.99834 * 0.02562 * 12 11 10 14 14 C 1.38801 * 120.00093 * 180.02562 * 12 11 10 15 15 N 1.31622 * 120.00145 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 120.00180 * 0.02562 * 14 12 11 17 17 H 1.48492 * 109.47586 * 89.99558 * 16 14 12 18 18 H 1.48505 * 109.47293 * 210.00502 * 16 14 12 19 19 H 1.48505 * 109.46772 * 329.99807 * 16 14 12 20 20 C 1.52994 * 109.46849 * 84.99779 * 8 7 5 21 21 C 1.53000 * 109.47356 * 295.00050 * 20 8 7 22 22 C 1.53002 * 109.47268 * 175.00333 * 21 20 8 23 23 C 1.53002 * 109.47070 * 295.00107 * 21 20 8 24 24 C 1.46548 * 118.28023 * 359.47832 * 4 3 2 25 25 N 1.31984 * 132.71947 * 180.27582 * 24 4 3 26 26 C 1.33740 * 109.17007 * 180.02562 * 25 24 4 27 27 C 1.34963 * 108.60631 * 359.97438 * 26 25 24 28 28 N 1.37005 * 107.14893 * 0.02562 * 27 26 25 29 29 C 1.35105 * 119.42733 * 179.76603 * 2 1 3 30 30 H 1.09003 * 109.47072 * 270.23757 * 1 2 3 31 31 H 1.09001 * 109.47191 * 30.23285 * 1 2 3 32 32 H 1.08996 * 109.47155 * 150.23515 * 1 2 3 33 33 H 1.07996 * 120.35596 * 0.06926 * 3 2 1 34 34 H 0.96998 * 119.99752 * 359.97438 * 7 5 4 35 35 H 1.09002 * 109.47153 * 294.99818 * 10 8 7 36 36 H 1.09001 * 109.46832 * 175.00009 * 10 8 7 37 37 H 0.96996 * 119.99606 * 0.02562 * 11 10 8 38 38 H 0.97010 * 119.99864 * 180.02562 * 15 14 12 39 39 H 1.08996 * 109.47643 * 55.00002 * 20 8 7 40 40 H 1.09004 * 109.47057 * 175.00174 * 20 8 7 41 41 H 1.09002 * 109.47443 * 55.00279 * 21 20 8 42 42 H 1.09003 * 109.47377 * 59.99931 * 22 21 20 43 43 H 1.09005 * 109.47252 * 179.97438 * 22 21 20 44 44 H 1.08996 * 109.46698 * 299.99946 * 22 21 20 45 45 H 1.08997 * 109.47141 * 60.00336 * 23 21 20 46 46 H 1.09009 * 109.47128 * 179.97438 * 23 21 20 47 47 H 1.08993 * 109.47222 * 299.99795 * 23 21 20 48 48 H 1.08001 * 125.69706 * 180.02562 * 26 25 24 49 49 H 1.07999 * 126.42613 * 180.02562 * 27 26 25 50 50 H 1.08000 * 119.13908 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1936 1.2171 0.0000 4 6 3.5830 1.2138 -0.0063 5 6 4.3412 2.4758 -0.0121 6 8 5.5574 2.4546 -0.0125 7 7 3.6877 3.6546 -0.0169 8 6 4.4421 4.9104 -0.0221 9 1 5.3509 4.7907 0.5677 10 6 3.5842 6.0233 0.5830 11 7 3.1304 5.6199 1.9163 12 6 2.3433 6.4620 2.6556 13 1 2.0567 7.4234 2.2555 14 6 1.9139 6.0800 3.9190 15 7 1.1569 6.8892 4.6293 16 14 2.4102 4.4176 4.6113 17 1 3.6866 4.5533 5.3580 18 1 1.3501 3.9265 5.5280 19 1 2.5885 3.4510 3.4980 20 6 4.8124 5.2768 -1.4606 21 6 5.7714 4.2261 -2.0239 22 6 6.0438 4.5232 -3.4999 23 6 7.0874 4.2667 -1.2443 24 6 4.2742 -0.0784 -0.0011 25 7 5.5516 -0.4106 -0.0001 26 6 5.6587 -1.7437 0.0050 27 6 4.4182 -2.2754 0.0079 28 7 3.5312 -1.2312 0.0039 29 6 2.1708 -1.1767 0.0048 30 1 -0.3633 0.0043 1.0277 31 1 -0.3633 0.8879 -0.5174 32 1 -0.3633 -0.8921 -0.5102 33 1 1.6501 2.1504 0.0011 34 1 2.7179 3.6714 -0.0169 35 1 2.7196 6.2036 -0.0559 36 1 4.1751 6.9359 0.6609 37 1 3.3882 4.7566 2.2757 38 1 0.8571 6.6224 5.5125 39 1 3.9101 5.3094 -2.0711 40 1 5.2955 6.2539 -1.4738 41 1 5.3233 3.2370 -1.9291 42 1 6.4920 5.5123 -3.5948 43 1 6.7274 3.7749 -3.9011 44 1 5.1063 4.4943 -4.0552 45 1 6.8934 4.0550 -0.1929 46 1 7.7705 3.5178 -1.6454 47 1 7.5355 5.2557 -1.3393 48 1 6.5834 -2.3016 0.0074 49 1 4.1711 -3.3267 0.0125 50 1 1.6076 -2.0982 0.0090 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715396217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:23 Heat of formation + Delta-G solvation = 41.949198 kcal Electronic energy + Delta-G solvation = -31213.438368 eV Core-core repulsion = 27241.440782 eV Total energy + Delta-G solvation = -3971.997586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.72018 -41.16622 -38.76447 -37.99964 -36.56188 -35.17432 -34.55570 -33.41281 -32.86009 -30.98204 -29.65404 -27.96965 -27.60594 -27.31892 -25.78386 -24.29436 -23.54754 -22.51137 -22.27732 -21.47502 -20.79207 -19.84064 -18.89032 -18.44887 -17.56370 -17.15587 -16.97516 -16.81385 -16.38658 -16.10235 -15.79531 -15.31852 -15.03137 -14.93422 -14.78811 -14.69688 -14.52846 -14.39964 -14.30862 -13.84513 -13.56928 -13.43081 -13.23033 -13.10591 -13.02298 -12.94855 -12.83830 -12.53852 -12.44278 -12.43445 -12.08229 -11.84849 -11.81545 -11.67813 -11.38574 -11.24714 -11.10118 -11.03917 -10.71685 -9.95782 -9.69787 -9.31298 -8.92231 -8.03861 -5.36074 -0.73415 0.23218 1.31229 1.37206 1.40806 1.48387 1.70115 1.93308 2.19402 2.44000 2.60555 3.07522 3.28773 3.35193 3.48785 3.57815 3.75522 3.82227 3.90092 4.08354 4.13293 4.26218 4.34237 4.40632 4.41280 4.45005 4.56094 4.63156 4.67189 4.77434 4.80961 4.87311 4.88272 4.89156 4.92228 4.99525 5.08586 5.13769 5.15884 5.20506 5.22897 5.39127 5.46167 5.56468 5.59671 5.61876 5.66904 5.76823 6.02480 6.20286 6.57106 6.93374 7.06249 7.28842 7.82259 8.00224 9.17582 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007702 B = 0.004712 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3634.420097 B = 5941.041608 C = 8147.282943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.127 4.127 3 C -0.037 4.037 4 C -0.131 4.131 5 C 0.554 3.446 6 O -0.530 6.530 7 N -0.706 5.706 8 C 0.144 3.856 9 H 0.070 0.930 10 C 0.149 3.851 11 N -0.757 5.757 12 C -0.226 4.226 13 H 0.067 0.933 14 C -0.052 4.052 15 N -0.979 5.979 16 Si 0.940 3.060 17 H -0.294 1.294 18 H -0.290 1.290 19 H -0.257 1.257 20 C -0.112 4.112 21 C -0.089 4.089 22 C -0.140 4.140 23 C -0.131 4.131 24 C 0.220 3.780 25 N -0.516 5.516 26 C -0.003 4.003 27 C -0.080 4.080 28 N -0.374 5.374 29 C 0.083 3.917 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.163 0.837 34 H 0.407 0.593 35 H 0.049 0.951 36 H 0.044 0.956 37 H 0.362 0.638 38 H 0.258 0.742 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.058 0.942 45 H 0.049 0.951 46 H 0.034 0.966 47 H 0.052 0.948 48 H 0.201 0.799 49 H 0.231 0.769 50 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.377 -20.235 -16.960 26.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.131 4.131 3 C -0.061 4.061 4 C -0.137 4.137 5 C 0.341 3.659 6 O -0.408 6.408 7 N -0.359 5.359 8 C 0.040 3.960 9 H 0.088 0.912 10 C 0.023 3.977 11 N -0.403 5.403 12 C -0.357 4.357 13 H 0.085 0.915 14 C -0.244 4.244 15 N -0.630 5.630 16 Si 0.769 3.231 17 H -0.221 1.221 18 H -0.217 1.217 19 H -0.182 1.182 20 C -0.151 4.151 21 C -0.108 4.108 22 C -0.197 4.197 23 C -0.188 4.188 24 C -0.027 4.027 25 N -0.235 5.235 26 C -0.152 4.152 27 C -0.209 4.209 28 N -0.046 5.046 29 C -0.039 4.039 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.181 0.819 34 H 0.243 0.757 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.195 0.805 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.053 0.947 47 H 0.071 0.929 48 H 0.218 0.782 49 H 0.247 0.753 50 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 1.080 -19.583 -16.943 25.917 hybrid contribution -0.463 -1.167 1.162 1.710 sum 0.618 -20.750 -15.781 26.076 Atomic orbital electron populations 1.20812 0.85771 1.05335 1.04013 1.19699 0.99363 0.90338 1.03659 1.22038 0.91119 1.00729 0.92201 1.20200 0.93401 0.89562 1.10558 1.17822 0.87452 0.83510 0.77098 1.90847 1.13731 1.87236 1.48955 1.45820 1.10660 1.04703 1.74764 1.21268 0.94687 0.82432 0.97627 0.91165 1.21116 0.96427 0.95185 0.85013 1.42724 1.61655 1.19050 1.16826 1.19057 1.21286 0.98497 0.96883 0.91512 1.25268 1.00587 1.01005 0.97504 1.69847 1.41884 1.38423 1.12804 0.85639 0.76925 0.81879 0.78616 1.22089 1.21670 1.18243 1.21950 1.00017 0.99492 0.93641 1.21056 0.95811 0.98646 0.95268 1.21796 1.01427 1.01602 0.94857 1.21732 0.96589 0.99821 1.00657 1.21640 0.87170 0.87465 1.06411 1.70716 1.15559 1.15200 1.22035 1.23219 0.99233 0.89586 1.03176 1.23374 0.88012 0.94386 1.15134 1.43122 1.07059 1.08176 1.46285 1.22249 0.80191 1.02231 0.99204 0.90025 0.89839 0.88398 0.81945 0.75656 0.93290 0.93760 0.80462 0.93338 0.90169 0.89648 0.92926 0.91836 0.93527 0.92264 0.93241 0.94721 0.92869 0.78177 0.75265 0.77262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 9.97 71.24 0.71 -0.14 16 2 C -0.13 -1.98 5.82 -20.22 -0.12 -2.10 16 3 C -0.04 -0.80 9.27 22.80 0.21 -0.59 16 4 C -0.13 -3.95 6.06 -18.58 -0.11 -4.07 16 5 C 0.55 18.86 6.32 86.61 0.55 19.41 16 6 O -0.53 -21.28 11.15 -4.13 -0.05 -21.33 16 7 N -0.71 -21.22 4.42 -445.99 -1.97 -23.19 16 8 C 0.14 4.48 2.33 44.99 0.10 4.59 16 9 H 0.07 2.55 5.92 -2.39 -0.01 2.54 16 10 C 0.15 5.26 5.82 86.38 0.50 5.76 16 11 N -0.76 -34.17 5.24 -343.45 -1.80 -35.97 16 12 C -0.23 -12.46 10.47 84.03 0.88 -11.58 16 13 H 0.07 3.97 8.06 -2.91 -0.02 3.94 16 14 C -0.05 -2.99 5.50 84.86 0.47 -2.52 16 15 N -0.98 -61.54 13.97 21.65 0.30 -61.23 16 16 Si 0.94 46.14 27.74 68.60 1.90 48.04 16 17 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 18 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 19 H -0.26 -11.59 6.52 99.48 0.65 -10.94 16 20 C -0.11 -2.84 4.36 30.59 0.13 -2.70 16 21 C -0.09 -2.45 2.38 -10.79 -0.03 -2.48 16 22 C -0.14 -3.10 9.19 71.98 0.66 -2.44 16 23 C -0.13 -3.97 8.03 71.98 0.58 -3.40 16 24 C 0.22 6.95 7.67 135.76 1.04 7.99 16 25 N -0.52 -17.97 10.70 -189.72 -2.03 -20.00 16 26 C 0.00 -0.09 11.83 83.65 0.99 0.90 16 27 C -0.08 -1.44 11.76 83.13 0.98 -0.46 16 28 N -0.37 -8.26 2.94 -347.21 -1.02 -9.28 16 29 C 0.08 1.21 10.48 83.30 0.87 2.08 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 32 H 0.10 0.31 8.05 -2.39 -0.02 0.29 16 33 H 0.16 2.92 6.48 -2.91 -0.02 2.91 16 34 H 0.41 10.74 6.70 -92.71 -0.62 10.12 16 35 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 36 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.36 16.50 5.20 -92.71 -0.48 16.02 16 38 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.05 1.71 5.19 -2.39 -0.01 1.70 16 42 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.05 1.77 4.75 -2.39 -0.01 1.76 16 46 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 47 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.20 3.53 8.06 -2.91 -0.02 3.50 16 49 H 0.23 1.63 8.06 -2.91 -0.02 1.61 16 50 H 0.21 0.95 8.04 -2.91 -0.02 0.93 16 Total: -1.00 -82.61 396.46 3.56 -79.05 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: -0.19 Total: 35.65 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 8.42 Total: 8.27 kcal Atomic # 7 Polarization: -143.16 SS G_CDS: -6.52 Total: -149.68 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.05 Total: -21.33 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.90 Total: 48.04 kcal Total: -82.61 3.56 -79.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715396217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.001 kcal (2) G-P(sol) polarization free energy of solvation -82.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds