Wall clock time and date at job start Wed Apr 1 2020 03:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34843 * 119.68029 * 2 1 4 4 C 1.40574 * 120.34158 * 180.02562 * 3 2 1 5 5 C 1.35893 * 119.73071 * 0.02562 * 4 3 2 6 6 C 1.41179 * 119.34860 * 359.97438 * 5 4 3 7 7 N 1.32236 * 132.05062 * 179.97438 * 6 5 4 8 8 C 1.34577 * 109.02605 * 180.02562 * 7 6 5 9 9 C 1.47594 * 125.91848 * 180.02562 * 8 7 6 10 10 O 1.21591 * 120.00123 * 179.97438 * 9 8 7 11 11 N 1.34775 * 120.00259 * 359.97438 * 9 8 7 12 12 C 1.46496 * 120.00333 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.46770 * 324.99899 * 12 11 9 14 14 C 1.53003 * 109.47086 * 204.99829 * 12 11 9 15 15 N 1.46493 * 109.47074 * 54.99883 * 14 12 11 16 16 C 1.36941 * 119.99913 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99995 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00026 * 180.02562 * 16 15 14 19 19 N 1.31621 * 119.99890 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99987 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47127 * 59.99726 * 20 18 16 22 22 H 1.48498 * 109.46955 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46879 * 299.99744 * 20 18 16 24 24 C 1.52996 * 109.47011 * 84.99579 * 12 11 9 25 25 C 1.53002 * 109.47095 * 60.00530 * 24 12 11 26 26 C 1.53004 * 109.47149 * 179.97438 * 24 12 11 27 27 C 1.52995 * 109.47427 * 300.00332 * 24 12 11 28 28 C 1.36580 * 108.16477 * 359.97438 * 8 7 6 29 29 N 1.36194 * 107.08958 * 0.24763 * 28 8 7 30 30 H 1.08996 * 109.47322 * 89.99748 * 1 2 3 31 31 H 1.08999 * 109.46820 * 209.99688 * 1 2 3 32 32 H 1.08996 * 109.46776 * 329.99733 * 1 2 3 33 33 H 1.08004 * 119.83361 * 359.97438 * 3 2 1 34 34 H 1.08005 * 120.13235 * 179.97438 * 4 3 2 35 35 H 1.08007 * 120.32795 * 179.97438 * 5 4 3 36 36 H 0.97006 * 119.99463 * 359.97438 * 11 9 8 37 37 H 1.08998 * 109.46605 * 175.00229 * 14 12 11 38 38 H 1.08996 * 109.46811 * 295.00062 * 14 12 11 39 39 H 0.96999 * 120.00140 * 359.97438 * 15 14 12 40 40 H 0.96996 * 119.99887 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.47560 * 59.99428 * 25 24 12 42 42 H 1.09004 * 109.47462 * 180.02562 * 25 24 12 43 43 H 1.09004 * 109.46646 * 299.99458 * 25 24 12 44 44 H 1.08999 * 109.46480 * 60.00413 * 26 24 12 45 45 H 1.08996 * 109.47265 * 179.97438 * 26 24 12 46 46 H 1.08996 * 109.47077 * 300.00309 * 26 24 12 47 47 H 1.08994 * 109.47349 * 59.99886 * 27 24 12 48 48 H 1.09009 * 109.47241 * 180.02562 * 27 24 12 49 49 H 1.09000 * 109.46799 * 299.99734 * 27 24 12 50 50 H 1.08002 * 126.45135 * 179.97438 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1747 1.1715 0.0000 4 6 3.5804 1.1877 -0.0005 5 6 4.2679 0.0156 -0.0016 6 6 3.5564 -1.2039 -0.0016 7 7 3.9583 -2.4637 -0.0029 8 6 2.8795 -3.2683 -0.0027 9 6 2.9000 -4.7441 -0.0034 10 8 1.8556 -5.3666 -0.0027 11 7 4.0765 -5.4017 -0.0048 12 6 4.0969 -6.8665 -0.0060 13 1 3.2606 -7.2420 0.5837 14 6 5.4117 -7.3587 0.6023 15 7 5.5829 -6.7733 1.9341 16 6 6.6946 -7.0723 2.6757 17 1 7.4453 -7.7394 2.2785 18 6 6.8567 -6.5179 3.9380 19 7 5.9415 -5.7053 4.4223 20 14 8.3735 -6.9253 4.9493 21 1 9.5896 -6.4989 4.2114 22 1 8.3081 -6.2109 6.2495 23 1 8.4289 -8.3895 5.1907 24 6 3.9771 -7.3770 -1.4433 25 6 5.1510 -6.8500 -2.2711 26 6 3.9991 -8.9069 -1.4447 27 6 2.6624 -6.8847 -2.0516 28 6 1.7623 -2.4826 -0.0007 29 7 2.1838 -1.1875 -0.0052 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.6268 2.1022 -0.0004 34 1 4.1117 2.1280 -0.0010 35 1 5.3479 0.0168 -0.0024 36 1 4.9097 -4.9050 -0.0057 37 1 5.3901 -8.4455 0.6830 38 1 6.2423 -7.0582 -0.0363 39 1 4.9089 -6.1738 2.2908 40 1 6.0549 -5.3177 5.3042 41 1 6.0877 -7.2006 -1.8378 42 1 5.0655 -7.2132 -3.2953 43 1 5.1358 -5.7600 -2.2702 44 1 3.1631 -9.2826 -0.8549 45 1 3.9134 -9.2705 -2.4686 46 1 4.9359 -9.2572 -1.0115 47 1 2.6473 -5.7949 -2.0507 48 1 2.5770 -7.2488 -3.0755 49 1 1.8262 -7.2603 -1.4618 50 1 0.7377 -2.8240 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725755274.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:31 Heat of formation + Delta-G solvation = 57.156075 kcal Electronic energy + Delta-G solvation = -30783.477374 eV Core-core repulsion = 26812.139208 eV Total energy + Delta-G solvation = -3971.338166 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.95664 -39.85566 -37.87884 -36.95096 -34.40084 -34.30918 -33.07539 -31.51805 -30.86113 -29.50292 -27.68512 -27.51960 -27.02297 -26.69736 -24.47143 -23.37697 -22.81886 -21.72319 -21.25521 -19.95268 -18.45756 -18.18574 -17.26564 -16.71246 -16.55975 -16.26864 -15.57919 -15.39544 -15.19551 -14.58120 -14.45229 -14.07511 -13.89938 -13.81359 -13.67154 -13.44916 -13.25878 -13.08710 -13.02316 -12.62698 -12.56893 -12.06656 -11.88019 -11.81160 -11.70465 -11.55727 -11.27365 -11.14510 -11.11205 -10.98661 -10.73629 -10.64428 -10.42727 -10.32370 -10.16624 -9.85396 -9.67556 -9.65175 -8.93802 -8.80417 -8.42960 -7.95684 -6.84991 -5.68497 -2.97900 0.47594 1.10712 2.15168 2.32513 3.25367 3.48448 3.52460 3.53753 3.56794 3.81140 3.96750 4.16600 4.48378 4.52993 4.63895 4.79790 5.00099 5.02559 5.04351 5.12971 5.19662 5.20524 5.26459 5.36072 5.47140 5.62699 5.63109 5.67922 5.80446 5.84407 5.88669 5.96267 5.99172 6.01513 6.13727 6.18803 6.22535 6.25706 6.28916 6.37672 6.41663 6.55292 6.56982 6.61757 6.73708 6.84025 6.86456 7.08273 7.61733 7.75260 8.07418 8.48908 8.64087 9.60452 10.18033 10.53163 11.53685 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008439 B = 0.003650 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3317.054666 B = 7670.331066 C =10032.460327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.086 3.914 3 C -0.145 4.145 4 C -0.103 4.103 5 C -0.075 4.075 6 C 0.226 3.774 7 N -0.454 5.454 8 C 0.018 3.982 9 C 0.601 3.399 10 O -0.542 6.542 11 N -0.687 5.687 12 C 0.148 3.852 13 H 0.088 0.912 14 C 0.142 3.858 15 N -0.730 5.730 16 C -0.241 4.241 17 H 0.069 0.931 18 C -0.011 4.011 19 N -0.930 5.930 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.287 1.287 24 C -0.076 4.076 25 C -0.142 4.142 26 C -0.140 4.140 27 C -0.129 4.129 28 C -0.025 4.025 29 N -0.362 5.362 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.149 0.851 34 H 0.143 0.857 35 H 0.154 0.846 36 H 0.413 0.587 37 H 0.036 0.964 38 H 0.029 0.971 39 H 0.386 0.614 40 H 0.254 0.746 41 H 0.062 0.938 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.052 0.948 46 H 0.062 0.938 47 H 0.051 0.949 48 H 0.041 0.959 49 H 0.061 0.939 50 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.488 13.078 -14.693 22.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.017 4.017 3 C -0.165 4.165 4 C -0.127 4.127 5 C -0.096 4.096 6 C -0.019 4.019 7 N -0.175 5.175 8 C -0.116 4.116 9 C 0.385 3.615 10 O -0.420 6.420 11 N -0.336 5.336 12 C 0.044 3.956 13 H 0.106 0.894 14 C 0.014 3.986 15 N -0.375 5.375 16 C -0.372 4.372 17 H 0.087 0.913 18 C -0.208 4.208 19 N -0.578 5.578 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.213 1.213 24 C -0.078 4.078 25 C -0.199 4.199 26 C -0.198 4.198 27 C -0.187 4.187 28 C -0.160 4.160 29 N -0.035 5.035 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.171 0.829 36 H 0.249 0.751 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.220 0.780 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.060 0.940 49 H 0.080 0.920 50 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -10.290 12.199 -14.624 21.647 hybrid contribution 0.260 0.597 0.878 1.093 sum -10.030 12.796 -13.746 21.291 Atomic orbital electron populations 1.20945 0.87893 1.04742 1.03911 1.20313 0.95200 0.83734 1.02409 1.20607 0.94802 0.96418 1.04694 1.21004 0.93632 0.98374 0.99701 1.20357 1.00945 0.87570 1.00679 1.20991 0.79896 0.94591 1.06404 1.70910 1.28589 0.97960 1.20030 1.20745 0.88991 0.94767 1.07103 1.16777 0.84382 0.83861 0.76457 1.90769 1.32305 1.67466 1.51485 1.45736 1.08505 1.07335 1.72060 1.21329 1.00494 0.78886 0.94930 0.89438 1.21090 0.92806 0.96620 0.88051 1.42347 1.25242 1.56248 1.13675 1.19156 0.98146 1.22972 0.96934 0.91260 1.24734 0.98362 0.99957 0.97706 1.69672 1.34760 1.35070 1.18289 0.86285 0.82776 0.77600 0.79607 1.21306 1.21792 1.21336 1.20901 0.96033 0.95722 0.95123 1.21919 0.98075 1.01069 0.98868 1.21883 1.02422 0.94169 1.01304 1.21885 0.96600 1.01092 0.99093 1.22489 1.01169 0.80237 1.12103 1.42730 1.08905 1.05539 1.46286 0.89712 0.90430 0.89146 0.83317 0.83939 0.82883 0.75099 0.94686 0.95366 0.77999 0.93567 0.91879 0.93278 0.92762 0.92560 0.92939 0.91875 0.92982 0.94038 0.91951 0.79052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 9.84 36.01 0.35 -0.35 16 2 C 0.09 0.81 6.78 -81.63 -0.55 0.26 16 3 C -0.14 -1.09 9.58 -39.91 -0.38 -1.48 16 4 C -0.10 -0.85 10.06 -39.54 -0.40 -1.24 16 5 C -0.08 -0.85 10.11 -39.31 -0.40 -1.25 16 6 C 0.23 3.36 7.79 -156.04 -1.22 2.15 16 7 N -0.45 -8.00 11.01 -9.35 -0.10 -8.10 16 8 C 0.02 0.30 6.94 -83.45 -0.58 -0.28 16 9 C 0.60 11.17 6.17 -12.44 -0.08 11.09 16 10 O -0.54 -10.64 13.99 5.29 0.07 -10.57 16 11 N -0.69 -12.65 3.64 -54.83 -0.20 -12.85 16 12 C 0.15 2.67 1.69 -67.93 -0.11 2.56 16 13 H 0.09 1.76 7.58 -51.93 -0.39 1.36 16 14 C 0.14 2.90 5.10 -4.04 -0.02 2.88 16 15 N -0.73 -18.94 5.43 -59.91 -0.33 -19.27 16 16 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -28.97 13.06 55.49 0.72 -28.25 16 20 Si 0.91 22.88 29.55 -169.99 -5.02 17.85 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 C -0.08 -1.13 0.62 -154.51 -0.10 -1.22 16 25 C -0.14 -1.97 7.97 37.16 0.30 -1.67 16 26 C -0.14 -1.87 8.12 37.16 0.30 -1.57 16 27 C -0.13 -1.92 7.00 37.16 0.26 -1.66 16 28 C -0.03 -0.36 10.78 -16.21 -0.17 -0.54 16 29 N -0.36 -4.73 2.93 -58.17 -0.17 -4.90 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.51 7.46 -51.93 -0.39 0.12 16 32 H 0.09 0.35 8.07 -51.93 -0.42 -0.07 16 33 H 0.15 0.62 8.06 -52.48 -0.42 0.20 16 34 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 35 H 0.15 1.50 8.06 -52.48 -0.42 1.08 16 36 H 0.41 7.92 8.30 -40.82 -0.34 7.58 16 37 H 0.04 0.71 6.71 -51.93 -0.35 0.37 16 38 H 0.03 0.57 6.17 -51.93 -0.32 0.25 16 39 H 0.39 10.83 7.33 -40.82 -0.30 10.53 16 40 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 41 H 0.06 0.89 6.32 -51.93 -0.33 0.56 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.78 7.60 -51.93 -0.39 0.39 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.86 6.54 -51.93 -0.34 0.52 16 47 H 0.05 0.84 5.77 -51.93 -0.30 0.54 16 48 H 0.04 0.54 8.14 -51.92 -0.42 0.12 16 49 H 0.06 0.99 7.53 -51.93 -0.39 0.60 16 50 H 0.19 2.28 7.77 -52.49 -0.41 1.87 16 LS Contribution 399.17 15.07 6.02 6.02 Total: -1.00 -34.78 399.17 -9.65 -44.43 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: -7.60 Total: 15.41 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -3.04 Total: 0.24 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -0.07 Total: -73.37 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.07 Total: -10.57 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.78 -9.65 -44.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725755274.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.581 kcal (2) G-P(sol) polarization free energy of solvation -34.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds