Wall clock time and date at job start Wed Apr 1 2020 03:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34843 * 119.68029 * 2 1 4 4 C 1.40574 * 120.34158 * 180.02562 * 3 2 1 5 5 C 1.35893 * 119.73071 * 0.02562 * 4 3 2 6 6 C 1.41179 * 119.34860 * 359.97438 * 5 4 3 7 7 N 1.32236 * 132.05062 * 179.97438 * 6 5 4 8 8 C 1.34577 * 109.02605 * 180.02562 * 7 6 5 9 9 C 1.47594 * 125.91848 * 180.02562 * 8 7 6 10 10 O 1.21591 * 120.00123 * 179.97438 * 9 8 7 11 11 N 1.34775 * 120.00259 * 359.97438 * 9 8 7 12 12 C 1.46496 * 120.00333 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.46770 * 324.99899 * 12 11 9 14 14 C 1.53003 * 109.47086 * 204.99829 * 12 11 9 15 15 N 1.46493 * 109.47074 * 54.99883 * 14 12 11 16 16 C 1.36941 * 119.99913 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99995 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00026 * 180.02562 * 16 15 14 19 19 N 1.31621 * 119.99890 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99987 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47127 * 59.99726 * 20 18 16 22 22 H 1.48498 * 109.46955 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46879 * 299.99744 * 20 18 16 24 24 C 1.52996 * 109.47011 * 84.99579 * 12 11 9 25 25 C 1.53002 * 109.47095 * 60.00530 * 24 12 11 26 26 C 1.53004 * 109.47149 * 179.97438 * 24 12 11 27 27 C 1.52995 * 109.47427 * 300.00332 * 24 12 11 28 28 C 1.36580 * 108.16477 * 359.97438 * 8 7 6 29 29 N 1.36194 * 107.08958 * 0.24763 * 28 8 7 30 30 H 1.08996 * 109.47322 * 89.99748 * 1 2 3 31 31 H 1.08999 * 109.46820 * 209.99688 * 1 2 3 32 32 H 1.08996 * 109.46776 * 329.99733 * 1 2 3 33 33 H 1.08004 * 119.83361 * 359.97438 * 3 2 1 34 34 H 1.08005 * 120.13235 * 179.97438 * 4 3 2 35 35 H 1.08007 * 120.32795 * 179.97438 * 5 4 3 36 36 H 0.97006 * 119.99463 * 359.97438 * 11 9 8 37 37 H 1.08998 * 109.46605 * 175.00229 * 14 12 11 38 38 H 1.08996 * 109.46811 * 295.00062 * 14 12 11 39 39 H 0.96999 * 120.00140 * 359.97438 * 15 14 12 40 40 H 0.96996 * 119.99887 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.47560 * 59.99428 * 25 24 12 42 42 H 1.09004 * 109.47462 * 180.02562 * 25 24 12 43 43 H 1.09004 * 109.46646 * 299.99458 * 25 24 12 44 44 H 1.08999 * 109.46480 * 60.00413 * 26 24 12 45 45 H 1.08996 * 109.47265 * 179.97438 * 26 24 12 46 46 H 1.08996 * 109.47077 * 300.00309 * 26 24 12 47 47 H 1.08994 * 109.47349 * 59.99886 * 27 24 12 48 48 H 1.09009 * 109.47241 * 180.02562 * 27 24 12 49 49 H 1.09000 * 109.46799 * 299.99734 * 27 24 12 50 50 H 1.08002 * 126.45135 * 179.97438 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1747 1.1715 0.0000 4 6 3.5804 1.1877 -0.0005 5 6 4.2679 0.0156 -0.0016 6 6 3.5564 -1.2039 -0.0016 7 7 3.9583 -2.4637 -0.0029 8 6 2.8795 -3.2683 -0.0027 9 6 2.9000 -4.7441 -0.0034 10 8 1.8556 -5.3666 -0.0027 11 7 4.0765 -5.4017 -0.0048 12 6 4.0969 -6.8665 -0.0060 13 1 3.2606 -7.2420 0.5837 14 6 5.4117 -7.3587 0.6023 15 7 5.5829 -6.7733 1.9341 16 6 6.6946 -7.0723 2.6757 17 1 7.4453 -7.7394 2.2785 18 6 6.8567 -6.5179 3.9380 19 7 5.9415 -5.7053 4.4223 20 14 8.3735 -6.9253 4.9493 21 1 9.5896 -6.4989 4.2114 22 1 8.3081 -6.2109 6.2495 23 1 8.4289 -8.3895 5.1907 24 6 3.9771 -7.3770 -1.4433 25 6 5.1510 -6.8500 -2.2711 26 6 3.9991 -8.9069 -1.4447 27 6 2.6624 -6.8847 -2.0516 28 6 1.7623 -2.4826 -0.0007 29 7 2.1838 -1.1875 -0.0052 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.6268 2.1022 -0.0004 34 1 4.1117 2.1280 -0.0010 35 1 5.3479 0.0168 -0.0024 36 1 4.9097 -4.9050 -0.0057 37 1 5.3901 -8.4455 0.6830 38 1 6.2423 -7.0582 -0.0363 39 1 4.9089 -6.1738 2.2908 40 1 6.0549 -5.3177 5.3042 41 1 6.0877 -7.2006 -1.8378 42 1 5.0655 -7.2132 -3.2953 43 1 5.1358 -5.7600 -2.2702 44 1 3.1631 -9.2826 -0.8549 45 1 3.9134 -9.2705 -2.4686 46 1 4.9359 -9.2572 -1.0115 47 1 2.6473 -5.7949 -2.0507 48 1 2.5770 -7.2488 -3.0755 49 1 1.8262 -7.2603 -1.4618 50 1 0.7377 -2.8240 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725755274.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:30 Heat of formation + Delta-G solvation = 35.155623 kcal Electronic energy + Delta-G solvation = -30784.431385 eV Core-core repulsion = 26812.139208 eV Total energy + Delta-G solvation = -3972.292177 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.94931 -41.25544 -38.95540 -38.16235 -36.19616 -35.23009 -34.56796 -33.03511 -32.26204 -30.50248 -29.36484 -28.20208 -28.16528 -27.90670 -26.06097 -24.95827 -23.74663 -23.07038 -22.49236 -21.25809 -19.86461 -19.32655 -18.96827 -17.91976 -17.63287 -17.31913 -16.99215 -16.75892 -16.37609 -16.15857 -15.49262 -15.31344 -15.27945 -15.03944 -14.85742 -14.73254 -14.66171 -14.26799 -14.12531 -13.70300 -13.57904 -13.24601 -13.08596 -13.03045 -12.92746 -12.71744 -12.55777 -12.48148 -12.42134 -12.32679 -12.21261 -12.06072 -12.04205 -11.76298 -11.65717 -11.47063 -11.30191 -11.09916 -10.89699 -10.03626 -9.78397 -8.99575 -8.87344 -7.92983 -5.23241 -0.36029 0.19673 1.00607 1.39937 1.46094 1.50269 1.56041 2.21650 2.31747 2.56233 2.57763 3.03393 3.35106 3.40944 3.62964 3.65143 3.77703 3.85675 4.02458 4.08171 4.17192 4.20830 4.25635 4.33001 4.44151 4.56111 4.60523 4.63524 4.64262 4.72742 4.81392 4.84705 4.88068 4.95650 5.02189 5.06005 5.07683 5.10838 5.14045 5.22748 5.23792 5.29945 5.32263 5.43046 5.49148 5.54815 5.56744 5.63263 5.96756 6.26371 6.43313 6.69806 7.19009 7.32967 8.07256 8.31204 9.30155 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008439 B = 0.003650 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3317.054666 B = 7670.331066 C =10032.460327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.066 3.934 3 C -0.135 4.135 4 C -0.071 4.071 5 C -0.117 4.117 6 C 0.214 3.786 7 N -0.504 5.504 8 C -0.021 4.021 9 C 0.598 3.402 10 O -0.562 6.562 11 N -0.688 5.688 12 C 0.156 3.844 13 H 0.061 0.939 14 C 0.145 3.855 15 N -0.744 5.744 16 C -0.245 4.245 17 H 0.080 0.920 18 C -0.076 4.076 19 N -0.970 5.970 20 Si 0.976 3.024 21 H -0.276 1.276 22 H -0.298 1.298 23 H -0.276 1.276 24 C -0.070 4.070 25 C -0.137 4.137 26 C -0.137 4.137 27 C -0.120 4.120 28 C -0.023 4.023 29 N -0.363 5.363 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.120 0.880 33 H 0.196 0.804 34 H 0.184 0.816 35 H 0.157 0.843 36 H 0.407 0.593 37 H 0.044 0.956 38 H 0.039 0.961 39 H 0.371 0.629 40 H 0.249 0.751 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.041 0.959 44 H 0.051 0.949 45 H 0.077 0.923 46 H 0.061 0.939 47 H 0.034 0.966 48 H 0.066 0.934 49 H 0.046 0.954 50 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.662 14.986 -16.064 24.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.036 4.036 3 C -0.154 4.154 4 C -0.094 4.094 5 C -0.137 4.137 6 C -0.032 4.032 7 N -0.225 5.225 8 C -0.153 4.153 9 C 0.384 3.616 10 O -0.442 6.442 11 N -0.336 5.336 12 C 0.052 3.948 13 H 0.079 0.921 14 C 0.019 3.981 15 N -0.386 5.386 16 C -0.377 4.377 17 H 0.098 0.902 18 C -0.268 4.268 19 N -0.621 5.621 20 Si 0.805 3.195 21 H -0.202 1.202 22 H -0.224 1.224 23 H -0.202 1.202 24 C -0.072 4.072 25 C -0.194 4.194 26 C -0.195 4.195 27 C -0.177 4.177 28 C -0.159 4.159 29 N -0.035 5.035 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.138 0.862 33 H 0.213 0.787 34 H 0.201 0.799 35 H 0.175 0.825 36 H 0.242 0.758 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.202 0.798 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.096 0.904 46 H 0.080 0.920 47 H 0.053 0.947 48 H 0.085 0.915 49 H 0.065 0.935 50 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -10.460 14.080 -16.043 23.771 hybrid contribution 0.244 0.208 1.242 1.283 sum -10.215 14.288 -14.801 22.969 Atomic orbital electron populations 1.21079 0.85375 1.05730 1.05075 1.21200 0.97123 0.82929 1.02315 1.21279 0.94760 0.97410 1.01993 1.21589 0.94230 0.98635 0.94977 1.20634 1.01527 0.87472 1.04086 1.21534 0.81144 0.94762 1.05750 1.70783 1.29508 0.99512 1.22733 1.20653 0.90384 0.94191 1.10056 1.17033 0.83995 0.84757 0.75778 1.90727 1.32669 1.68173 1.52635 1.45720 1.08318 1.07355 1.72220 1.21229 0.97994 0.78884 0.96734 0.92069 1.21227 0.94397 0.96679 0.85840 1.42545 1.24340 1.56267 1.15469 1.19626 0.98686 1.22161 0.97188 0.90177 1.25608 1.01576 1.00418 0.99160 1.69866 1.37023 1.36829 1.18389 0.85171 0.79268 0.77580 0.77479 1.20179 1.22435 1.20246 1.20870 0.96644 0.96871 0.92801 1.21867 0.97193 1.00332 0.99977 1.21871 1.02148 0.92590 1.02881 1.21772 0.95889 0.99905 1.00173 1.22642 1.01065 0.80804 1.11362 1.42890 1.08572 1.06130 1.45865 0.88347 0.91399 0.86189 0.78663 0.79854 0.82527 0.75781 0.93835 0.94307 0.79750 0.94264 0.92144 0.90823 0.93937 0.93008 0.90380 0.92042 0.94724 0.91541 0.93480 0.77355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.84 71.24 0.70 -0.36 16 2 C 0.07 1.10 6.78 41.02 0.28 1.38 16 3 C -0.13 -1.49 9.58 22.06 0.21 -1.28 16 4 C -0.07 -0.92 10.06 22.30 0.22 -0.70 16 5 C -0.12 -2.60 10.11 22.45 0.23 -2.37 16 6 C 0.21 6.62 7.79 134.20 1.05 7.66 16 7 N -0.50 -19.19 11.01 -183.49 -2.02 -21.21 16 8 C -0.02 -0.77 6.94 40.81 0.28 -0.49 16 9 C 0.60 24.10 6.17 86.71 0.54 24.63 16 10 O -0.56 -23.69 13.99 -4.00 -0.06 -23.75 16 11 N -0.69 -27.27 3.64 -445.65 -1.62 -28.89 16 12 C 0.16 5.91 1.69 44.99 0.08 5.99 16 13 H 0.06 2.63 7.58 -2.39 -0.02 2.61 16 14 C 0.15 6.07 5.10 86.38 0.44 6.51 16 15 N -0.74 -39.98 5.43 -343.46 -1.87 -41.85 16 16 C -0.25 -14.17 9.99 84.03 0.84 -13.33 16 17 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 18 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 19 N -0.97 -62.60 13.06 21.65 0.28 -62.32 16 20 Si 0.98 47.72 29.55 68.60 2.03 49.75 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 22 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 24 C -0.07 -2.09 0.62 -52.18 -0.03 -2.12 16 25 C -0.14 -3.69 7.97 71.98 0.57 -3.12 16 26 C -0.14 -3.52 8.12 71.98 0.58 -2.94 16 27 C -0.12 -3.60 7.00 71.98 0.50 -3.09 16 28 C -0.02 -0.69 10.78 83.63 0.90 0.21 16 29 N -0.36 -9.55 2.93 -337.96 -0.99 -10.54 16 30 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.79 7.46 -2.39 -0.02 0.77 16 32 H 0.12 0.40 8.07 -2.39 -0.02 0.38 16 33 H 0.20 0.36 8.06 -2.91 -0.02 0.34 16 34 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16 35 H 0.16 3.17 8.06 -2.91 -0.02 3.14 16 36 H 0.41 16.97 8.30 -92.70 -0.77 16.20 16 37 H 0.04 1.78 6.71 -2.39 -0.02 1.76 16 38 H 0.04 1.58 6.17 -2.39 -0.01 1.56 16 39 H 0.37 21.99 7.33 -92.71 -0.68 21.31 16 40 H 0.25 15.61 8.31 -92.71 -0.77 14.83 16 41 H 0.06 1.65 6.32 -2.39 -0.02 1.64 16 42 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 43 H 0.04 1.24 7.60 -2.39 -0.02 1.23 16 44 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.06 1.59 6.54 -2.39 -0.02 1.58 16 47 H 0.03 1.15 5.77 -2.39 -0.01 1.14 16 48 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 49 H 0.05 1.54 7.53 -2.39 -0.02 1.52 16 50 H 0.21 5.24 7.77 -2.91 -0.02 5.21 16 Total: -1.00 -80.58 399.17 3.14 -77.44 By element: Atomic # 1 Polarization: 49.31 SS G_CDS: -0.48 Total: 48.83 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 7.86 Total: 12.54 kcal Atomic # 7 Polarization: -158.60 SS G_CDS: -6.22 Total: -164.81 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.06 Total: -23.75 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.75 kcal Total: -80.58 3.14 -77.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725755274.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.600 kcal (2) G-P(sol) polarization free energy of solvation -80.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds