Wall clock time and date at job start Wed Apr 1 2020 03:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39734 * 119.43003 * 2 1 4 4 C 1.38946 * 119.29515 * 180.30666 * 3 2 1 5 5 C 1.47220 * 120.85826 * 179.97438 * 4 3 2 6 6 O 1.21638 * 120.00116 * 146.19241 * 5 4 3 7 7 N 1.34775 * 120.00321 * 326.18377 * 5 4 3 8 8 C 1.46503 * 119.99790 * 5.43111 * 7 5 4 9 9 C 1.46496 * 120.00505 * 185.43586 * 7 5 4 10 10 C 1.52997 * 109.47570 * 89.99585 * 9 7 5 11 11 C 1.53000 * 109.47492 * 300.00588 * 10 9 7 12 12 C 1.53009 * 109.46791 * 60.00395 * 10 9 7 13 13 C 1.53000 * 109.47510 * 179.97438 * 10 9 7 14 14 N 1.46498 * 109.47501 * 180.02562 * 13 10 9 15 15 C 1.36929 * 120.00593 * 180.02562 * 14 13 10 16 16 H 1.08005 * 119.99840 * 0.02562 * 15 14 13 17 17 C 1.38807 * 120.00699 * 180.02562 * 15 14 13 18 18 N 1.31623 * 119.99713 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00338 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47102 * 90.00058 * 19 17 15 21 21 H 1.48502 * 109.47361 * 209.99503 * 19 17 15 22 22 H 1.48502 * 109.47137 * 329.99760 * 19 17 15 23 23 C 1.46550 * 118.27933 * 359.93267 * 4 3 2 24 24 N 1.31976 * 132.72170 * 180.02562 * 23 4 3 25 25 C 1.33744 * 109.16902 * 179.97438 * 24 23 4 26 26 C 1.34953 * 108.60938 * 359.97438 * 25 24 23 27 27 N 1.37005 * 107.14850 * 0.02562 * 26 25 24 28 28 C 1.35113 * 119.42721 * 180.27467 * 2 1 3 29 29 H 1.09003 * 109.46655 * 269.72766 * 1 2 3 30 30 H 1.08993 * 109.47026 * 29.72819 * 1 2 3 31 31 H 1.09000 * 109.46875 * 149.72650 * 1 2 3 32 32 H 1.07997 * 120.34986 * 0.25608 * 3 2 1 33 33 H 1.09005 * 109.46537 * 95.78663 * 8 7 5 34 34 H 1.08998 * 109.47542 * 215.78603 * 8 7 5 35 35 H 1.08998 * 109.47228 * 335.79321 * 8 7 5 36 36 H 1.09000 * 109.47218 * 210.00168 * 9 7 5 37 37 H 1.09002 * 109.46767 * 329.99914 * 9 7 5 38 38 H 1.09000 * 109.47089 * 59.99046 * 11 10 9 39 39 H 1.08990 * 109.47052 * 179.97438 * 11 10 9 40 40 H 1.09002 * 109.46903 * 299.99707 * 11 10 9 41 41 H 1.09000 * 109.47086 * 59.99975 * 12 10 9 42 42 H 1.09001 * 109.46766 * 180.02562 * 12 10 9 43 43 H 1.08999 * 109.46957 * 299.99802 * 12 10 9 44 44 H 1.09000 * 109.47341 * 300.00622 * 13 10 9 45 45 H 1.09002 * 109.46704 * 60.00404 * 13 10 9 46 46 H 0.97008 * 119.99491 * 0.02562 * 14 13 10 47 47 H 0.96999 * 120.00176 * 179.97438 * 18 17 15 48 48 H 1.08008 * 125.69597 * 179.97438 * 25 24 23 49 49 H 1.07993 * 126.42824 * 179.97438 * 26 25 24 50 50 H 1.07997 * 119.13888 * 359.72145 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1937 1.2170 0.0000 4 6 3.5831 1.2138 -0.0065 5 6 4.3412 2.4758 -0.0073 6 8 5.4074 2.5452 0.5740 7 7 3.8539 3.5542 -0.6522 8 6 2.5176 3.5079 -1.2508 9 6 4.6606 4.7728 -0.7548 10 6 5.5112 4.7161 -2.0252 11 6 6.4340 3.4970 -1.9672 12 6 4.5965 4.6057 -3.2468 13 6 6.3531 5.9891 -2.1326 14 7 7.1672 5.9350 -3.3494 15 6 8.0072 6.9714 -3.6579 16 1 8.0699 7.8287 -3.0040 17 6 8.7781 6.9205 -4.8111 18 7 8.7021 5.8755 -5.6079 19 14 9.9235 8.3347 -5.2322 20 1 11.2573 8.0883 -4.6276 21 1 10.0603 8.4385 -6.7073 22 1 9.3635 9.6015 -4.6967 23 6 4.2744 -0.0785 -0.0116 24 7 5.5516 -0.4106 -0.0176 25 6 5.6587 -1.7437 -0.0197 26 6 4.4183 -2.2754 -0.0144 27 7 3.5313 -1.2313 -0.0094 28 6 2.1709 -1.1768 -0.0056 29 1 -0.3633 -0.0049 1.0277 30 1 -0.3633 0.8924 -0.5096 31 1 -0.3633 -0.8875 -0.5181 32 1 1.6501 2.1502 0.0042 33 1 1.7937 3.9350 -0.5568 34 1 2.5145 4.0815 -2.1777 35 1 2.2503 2.4727 -1.4632 36 1 4.0032 5.6413 -0.7961 37 1 5.3122 4.8515 0.1155 38 1 5.8338 2.5904 -1.8909 39 1 7.0396 3.4564 -2.8724 40 1 7.0856 3.5757 -1.0969 41 1 3.9391 5.4741 -3.2882 42 1 5.2026 4.5648 -4.1519 43 1 3.9964 3.6990 -3.1706 44 1 5.6954 6.8573 -2.1742 45 1 7.0047 6.0682 -1.2624 46 1 7.1111 5.1649 -3.9366 47 1 9.2405 5.8400 -6.4139 48 1 6.5835 -2.3017 -0.0248 49 1 4.1712 -3.3267 -0.0148 50 1 1.6077 -2.0983 -0.0055 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734018461.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:28 Heat of formation + Delta-G solvation = 91.566591 kcal Electronic energy + Delta-G solvation = -30874.569360 eV Core-core repulsion = 26904.723345 eV Total energy + Delta-G solvation = -3969.846014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.96360 -40.25188 -38.09043 -37.18648 -35.16448 -33.90847 -33.01188 -32.23721 -30.17047 -29.24554 -27.86041 -27.13884 -26.71090 -26.19583 -25.37936 -23.95048 -22.83355 -22.10118 -21.77711 -19.69869 -18.30718 -18.12934 -17.78238 -17.15430 -16.40767 -16.19242 -15.94729 -15.55449 -15.35498 -14.59346 -14.34387 -14.13943 -14.01304 -13.88001 -13.80219 -13.64561 -13.35893 -13.16236 -12.97828 -12.76990 -12.58038 -12.53322 -12.24057 -12.19614 -11.82666 -11.64822 -11.16040 -11.05881 -10.91654 -10.84982 -10.74493 -10.59231 -10.23317 -10.15506 -10.14411 -9.90985 -9.63668 -9.56833 -8.96910 -8.76999 -8.50244 -8.14943 -6.79237 -5.66558 -2.93747 0.05746 0.94475 2.17286 2.49976 2.76826 2.96247 3.40431 3.50341 3.55119 3.56664 3.81824 3.96539 4.16791 4.27121 4.48469 4.68532 4.76313 4.86977 4.91326 5.04805 5.09745 5.12523 5.20934 5.23515 5.34146 5.36558 5.40800 5.49746 5.52666 5.56699 5.63670 5.67231 5.80628 6.01679 6.04361 6.07250 6.21136 6.25918 6.38661 6.39668 6.53844 6.64155 6.71340 6.73800 6.84813 6.88942 7.05105 7.12273 7.36038 7.74396 7.79395 8.22648 8.53010 9.63903 10.24006 10.58796 11.56678 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017385 B = 0.002562 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.191262 B =10927.837262 C =11759.768013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.124 4.124 3 C -0.074 4.074 4 C -0.078 4.078 5 C 0.563 3.437 6 O -0.498 6.498 7 N -0.602 5.602 8 C 0.050 3.950 9 C 0.129 3.871 10 C -0.087 4.087 11 C -0.123 4.123 12 C -0.136 4.136 13 C 0.166 3.834 14 N -0.728 5.728 15 C -0.234 4.234 16 H 0.069 0.931 17 C -0.016 4.016 18 N -0.935 5.935 19 Si 0.906 3.094 20 H -0.291 1.291 21 H -0.293 1.293 22 H -0.283 1.283 23 C 0.249 3.751 24 N -0.461 5.461 25 C 0.031 3.969 26 C -0.099 4.099 27 N -0.370 5.370 28 C 0.074 3.926 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.162 0.838 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.038 0.962 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.066 0.934 43 H 0.045 0.955 44 H 0.017 0.983 45 H 0.020 0.980 46 H 0.385 0.615 47 H 0.254 0.746 48 H 0.183 0.817 49 H 0.185 0.815 50 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.491 -17.049 12.668 31.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.127 4.127 3 C -0.097 4.097 4 C -0.084 4.084 5 C 0.350 3.650 6 O -0.372 6.372 7 N -0.336 5.336 8 C -0.093 4.093 9 C 0.007 3.993 10 C -0.088 4.088 11 C -0.180 4.180 12 C -0.193 4.193 13 C 0.038 3.962 14 N -0.373 5.373 15 C -0.365 4.365 16 H 0.087 0.913 17 C -0.212 4.212 18 N -0.584 5.584 19 Si 0.738 3.262 20 H -0.218 1.218 21 H -0.219 1.219 22 H -0.209 1.209 23 C 0.003 3.997 24 N -0.179 5.179 25 C -0.119 4.119 26 C -0.228 4.228 27 N -0.042 5.042 28 C -0.048 4.048 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.179 0.821 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.035 0.965 45 H 0.038 0.962 46 H 0.220 0.780 47 H 0.064 0.936 48 H 0.200 0.800 49 H 0.202 0.798 50 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -22.118 -16.385 12.988 30.436 hybrid contribution -0.027 -0.302 -0.609 0.681 sum -22.145 -16.687 12.379 30.366 Atomic orbital electron populations 1.20700 0.88528 1.03735 1.03083 1.19283 0.97503 0.91245 1.04670 1.22091 0.92205 0.99239 0.96198 1.20163 0.92440 0.90308 1.05528 1.17497 0.85217 0.82384 0.79923 1.90889 1.20945 1.83022 1.42302 1.47571 1.17241 1.13754 1.54989 1.22607 0.83620 1.03684 0.99399 1.21588 0.93996 0.84484 0.99227 1.21126 0.95730 0.97757 0.94181 1.21694 0.98603 0.95300 1.02441 1.21897 0.99011 0.99803 0.98609 1.20575 0.92189 0.92662 0.90792 1.42393 1.48404 1.22795 1.23682 1.19240 1.15383 0.97492 1.04424 0.91290 1.24716 1.00731 0.97946 0.97803 1.69665 1.44320 1.29504 1.14903 0.86196 0.81099 0.81769 0.77175 1.21815 1.21905 1.20861 1.21519 0.86868 0.86152 1.05205 1.70808 1.13946 1.13157 1.19966 1.22710 0.97205 0.90330 1.01695 1.22678 0.89078 0.93029 1.18058 1.42853 1.05915 1.08801 1.46675 1.21423 0.81306 1.00340 1.01765 0.90544 0.90449 0.91022 0.82073 0.92208 0.89933 0.89884 0.90363 0.89435 0.94278 0.92171 0.92499 0.93216 0.91472 0.93649 0.96508 0.96231 0.77993 0.93645 0.79984 0.79831 0.82000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.28 9.97 36.01 0.36 0.08 16 2 C -0.12 -0.79 5.82 -105.17 -0.61 -1.40 16 3 C -0.07 -0.61 7.16 -38.76 -0.28 -0.89 16 4 C -0.08 -1.02 5.62 -102.64 -0.58 -1.60 16 5 C 0.56 8.68 5.67 -12.61 -0.07 8.61 16 6 O -0.50 -9.77 14.99 5.24 0.08 -9.69 16 7 N -0.60 -7.72 2.40 -182.93 -0.44 -8.15 16 8 C 0.05 0.41 7.94 59.85 0.48 0.89 16 9 C 0.13 1.87 4.63 -4.05 -0.02 1.85 16 10 C -0.09 -1.53 0.60 -154.50 -0.09 -1.62 16 11 C -0.12 -2.47 7.06 37.16 0.26 -2.21 16 12 C -0.14 -2.23 7.06 37.16 0.26 -1.97 16 13 C 0.17 3.53 5.15 -4.04 -0.02 3.51 16 14 N -0.73 -19.16 5.00 -59.91 -0.30 -19.46 16 15 C -0.23 -6.79 9.99 -15.06 -0.15 -6.94 16 16 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 17 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 18 N -0.93 -29.19 13.06 55.49 0.72 -28.47 16 19 Si 0.91 23.18 29.55 -169.99 -5.02 18.15 16 20 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 21 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 22 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 23 C 0.25 3.63 7.68 -154.14 -1.18 2.45 16 24 N -0.46 -7.66 11.16 -11.32 -0.13 -7.78 16 25 C 0.03 0.37 11.83 -17.89 -0.21 0.16 16 26 C -0.10 -0.94 11.76 -16.41 -0.19 -1.13 16 27 N -0.37 -3.97 2.94 -61.10 -0.18 -4.15 16 28 C 0.07 0.53 10.48 -16.75 -0.18 0.35 16 29 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.08 0.15 8.07 -51.93 -0.42 -0.27 16 31 H 0.07 0.11 8.06 -51.93 -0.42 -0.30 16 32 H 0.16 0.91 5.07 -52.49 -0.27 0.65 16 33 H 0.06 0.34 7.58 -51.93 -0.39 -0.05 16 34 H 0.08 0.70 5.82 -51.93 -0.30 0.39 16 35 H 0.08 0.61 4.62 -51.93 -0.24 0.38 16 36 H 0.08 0.94 8.07 -51.93 -0.42 0.53 16 37 H 0.09 1.40 7.35 -51.93 -0.38 1.02 16 38 H 0.04 0.77 6.22 -51.93 -0.32 0.44 16 39 H 0.06 1.34 6.86 -51.93 -0.36 0.99 16 40 H 0.06 1.23 7.85 -51.93 -0.41 0.82 16 41 H 0.05 0.74 8.10 -51.93 -0.42 0.32 16 42 H 0.07 1.32 6.86 -51.93 -0.36 0.96 16 43 H 0.04 0.65 5.89 -51.93 -0.31 0.34 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.38 10.65 5.36 -40.82 -0.22 10.43 16 47 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 48 H 0.18 1.64 8.06 -52.48 -0.42 1.21 16 49 H 0.18 0.95 8.06 -52.49 -0.42 0.52 16 50 H 0.16 0.55 8.04 -52.49 -0.42 0.13 16 LS Contribution 390.86 15.07 5.89 5.89 Total: -1.00 -38.81 390.86 -9.01 -47.82 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -7.31 Total: 6.28 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -2.32 Total: -0.43 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -0.32 Total: -68.01 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.08 Total: -9.69 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.81 -9.01 -47.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734018461.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.383 kcal (2) G-P(sol) polarization free energy of solvation -38.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds