Wall clock time and date at job start Wed Apr 1 2020 03:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39734 * 119.43003 * 2 1 4 4 C 1.38946 * 119.29515 * 180.30666 * 3 2 1 5 5 C 1.47220 * 120.85826 * 179.97438 * 4 3 2 6 6 O 1.21638 * 120.00116 * 146.19241 * 5 4 3 7 7 N 1.34775 * 120.00321 * 326.18377 * 5 4 3 8 8 C 1.46503 * 119.99790 * 5.43111 * 7 5 4 9 9 C 1.46496 * 120.00505 * 185.43586 * 7 5 4 10 10 C 1.52997 * 109.47570 * 89.99585 * 9 7 5 11 11 C 1.53000 * 109.47492 * 300.00588 * 10 9 7 12 12 C 1.53009 * 109.46791 * 60.00395 * 10 9 7 13 13 C 1.53000 * 109.47510 * 179.97438 * 10 9 7 14 14 N 1.46498 * 109.47501 * 180.02562 * 13 10 9 15 15 C 1.36929 * 120.00593 * 180.02562 * 14 13 10 16 16 H 1.08005 * 119.99840 * 0.02562 * 15 14 13 17 17 C 1.38807 * 120.00699 * 180.02562 * 15 14 13 18 18 N 1.31623 * 119.99713 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00338 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47102 * 90.00058 * 19 17 15 21 21 H 1.48502 * 109.47361 * 209.99503 * 19 17 15 22 22 H 1.48502 * 109.47137 * 329.99760 * 19 17 15 23 23 C 1.46550 * 118.27933 * 359.93267 * 4 3 2 24 24 N 1.31976 * 132.72170 * 180.02562 * 23 4 3 25 25 C 1.33744 * 109.16902 * 179.97438 * 24 23 4 26 26 C 1.34953 * 108.60938 * 359.97438 * 25 24 23 27 27 N 1.37005 * 107.14850 * 0.02562 * 26 25 24 28 28 C 1.35113 * 119.42721 * 180.27467 * 2 1 3 29 29 H 1.09003 * 109.46655 * 269.72766 * 1 2 3 30 30 H 1.08993 * 109.47026 * 29.72819 * 1 2 3 31 31 H 1.09000 * 109.46875 * 149.72650 * 1 2 3 32 32 H 1.07997 * 120.34986 * 0.25608 * 3 2 1 33 33 H 1.09005 * 109.46537 * 95.78663 * 8 7 5 34 34 H 1.08998 * 109.47542 * 215.78603 * 8 7 5 35 35 H 1.08998 * 109.47228 * 335.79321 * 8 7 5 36 36 H 1.09000 * 109.47218 * 210.00168 * 9 7 5 37 37 H 1.09002 * 109.46767 * 329.99914 * 9 7 5 38 38 H 1.09000 * 109.47089 * 59.99046 * 11 10 9 39 39 H 1.08990 * 109.47052 * 179.97438 * 11 10 9 40 40 H 1.09002 * 109.46903 * 299.99707 * 11 10 9 41 41 H 1.09000 * 109.47086 * 59.99975 * 12 10 9 42 42 H 1.09001 * 109.46766 * 180.02562 * 12 10 9 43 43 H 1.08999 * 109.46957 * 299.99802 * 12 10 9 44 44 H 1.09000 * 109.47341 * 300.00622 * 13 10 9 45 45 H 1.09002 * 109.46704 * 60.00404 * 13 10 9 46 46 H 0.97008 * 119.99491 * 0.02562 * 14 13 10 47 47 H 0.96999 * 120.00176 * 179.97438 * 18 17 15 48 48 H 1.08008 * 125.69597 * 179.97438 * 25 24 23 49 49 H 1.07993 * 126.42824 * 179.97438 * 26 25 24 50 50 H 1.07997 * 119.13888 * 359.72145 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1937 1.2170 0.0000 4 6 3.5831 1.2138 -0.0065 5 6 4.3412 2.4758 -0.0073 6 8 5.4074 2.5452 0.5740 7 7 3.8539 3.5542 -0.6522 8 6 2.5176 3.5079 -1.2508 9 6 4.6606 4.7728 -0.7548 10 6 5.5112 4.7161 -2.0252 11 6 6.4340 3.4970 -1.9672 12 6 4.5965 4.6057 -3.2468 13 6 6.3531 5.9891 -2.1326 14 7 7.1672 5.9350 -3.3494 15 6 8.0072 6.9714 -3.6579 16 1 8.0699 7.8287 -3.0040 17 6 8.7781 6.9205 -4.8111 18 7 8.7021 5.8755 -5.6079 19 14 9.9235 8.3347 -5.2322 20 1 11.2573 8.0883 -4.6276 21 1 10.0603 8.4385 -6.7073 22 1 9.3635 9.6015 -4.6967 23 6 4.2744 -0.0785 -0.0116 24 7 5.5516 -0.4106 -0.0176 25 6 5.6587 -1.7437 -0.0197 26 6 4.4183 -2.2754 -0.0144 27 7 3.5313 -1.2313 -0.0094 28 6 2.1709 -1.1768 -0.0056 29 1 -0.3633 -0.0049 1.0277 30 1 -0.3633 0.8924 -0.5096 31 1 -0.3633 -0.8875 -0.5181 32 1 1.6501 2.1502 0.0042 33 1 1.7937 3.9350 -0.5568 34 1 2.5145 4.0815 -2.1777 35 1 2.2503 2.4727 -1.4632 36 1 4.0032 5.6413 -0.7961 37 1 5.3122 4.8515 0.1155 38 1 5.8338 2.5904 -1.8909 39 1 7.0396 3.4564 -2.8724 40 1 7.0856 3.5757 -1.0969 41 1 3.9391 5.4741 -3.2882 42 1 5.2026 4.5648 -4.1519 43 1 3.9964 3.6990 -3.1706 44 1 5.6954 6.8573 -2.1742 45 1 7.0047 6.0682 -1.2624 46 1 7.1111 5.1649 -3.9366 47 1 9.2405 5.8400 -6.4139 48 1 6.5835 -2.3017 -0.0248 49 1 4.1712 -3.3267 -0.0148 50 1 1.6077 -2.0983 -0.0055 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734018461.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:27 Heat of formation + Delta-G solvation = 65.697449 kcal Electronic energy + Delta-G solvation = -30875.691130 eV Core-core repulsion = 26904.723345 eV Total energy + Delta-G solvation = -3970.967784 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.73369 -41.34768 -38.94684 -38.50361 -36.46933 -35.20370 -34.36406 -32.98742 -32.12529 -30.12663 -28.87223 -28.18011 -27.56374 -27.36227 -27.17601 -25.04987 -24.22404 -23.24788 -22.51156 -20.71147 -19.87068 -19.13700 -18.91343 -18.56351 -17.32984 -17.11416 -16.96407 -16.67618 -16.47341 -16.12762 -15.58731 -15.40229 -15.26918 -14.96763 -14.68484 -14.55853 -14.37064 -14.25832 -14.20127 -13.90189 -13.70192 -13.59386 -13.37410 -12.96550 -12.92451 -12.81305 -12.66042 -12.51155 -12.43156 -12.36345 -12.28965 -12.09897 -11.75289 -11.67807 -11.55342 -11.51899 -11.09540 -10.94029 -10.77358 -9.71593 -9.57098 -8.97565 -8.89625 -7.94064 -5.22292 -0.64905 0.25580 1.39506 1.45332 1.48507 1.56548 1.72124 1.90413 2.03731 2.51903 2.56615 3.10591 3.30237 3.38934 3.56147 3.75693 3.80756 3.83959 3.90795 3.95497 4.21394 4.23241 4.28883 4.43415 4.45244 4.45716 4.55285 4.58909 4.63507 4.71528 4.76594 4.79373 4.82830 4.87254 4.90414 4.94850 4.97398 5.13325 5.14679 5.17549 5.19304 5.27706 5.39467 5.48402 5.50871 5.53775 5.57081 5.60498 6.05317 6.28000 6.37015 6.93306 7.17756 7.34068 8.11283 8.35127 9.29983 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017385 B = 0.002562 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.191262 B =10927.837262 C =11759.768013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.125 4.125 3 C -0.036 4.036 4 C -0.134 4.134 5 C 0.558 3.442 6 O -0.561 6.561 7 N -0.598 5.598 8 C 0.039 3.961 9 C 0.137 3.863 10 C -0.077 4.077 11 C -0.103 4.103 12 C -0.125 4.125 13 C 0.165 3.835 14 N -0.740 5.740 15 C -0.242 4.242 16 H 0.076 0.924 17 C -0.079 4.079 18 N -0.972 5.972 19 Si 0.976 3.024 20 H -0.291 1.291 21 H -0.294 1.294 22 H -0.266 1.266 23 C 0.220 3.780 24 N -0.535 5.535 25 C -0.007 4.007 26 C -0.078 4.078 27 N -0.373 5.373 28 C 0.076 3.924 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.192 0.808 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.065 0.935 38 H 0.038 0.962 39 H 0.026 0.974 40 H 0.029 0.971 41 H 0.074 0.926 42 H 0.029 0.971 43 H 0.068 0.932 44 H 0.037 0.963 45 H 0.007 0.993 46 H 0.374 0.626 47 H 0.250 0.750 48 H 0.195 0.805 49 H 0.232 0.768 50 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.477 -17.322 13.058 35.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.128 4.128 3 C -0.059 4.059 4 C -0.140 4.140 5 C 0.347 3.653 6 O -0.440 6.440 7 N -0.330 5.330 8 C -0.101 4.101 9 C 0.014 3.986 10 C -0.078 4.078 11 C -0.161 4.161 12 C -0.182 4.182 13 C 0.037 3.963 14 N -0.383 5.383 15 C -0.374 4.374 16 H 0.094 0.906 17 C -0.271 4.271 18 N -0.623 5.623 19 Si 0.805 3.195 20 H -0.219 1.219 21 H -0.220 1.220 22 H -0.191 1.191 23 C -0.027 4.027 24 N -0.255 5.255 25 C -0.155 4.155 26 C -0.207 4.207 27 N -0.045 5.045 28 C -0.046 4.046 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.209 0.791 33 H 0.118 0.882 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.134 0.866 37 H 0.083 0.917 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.048 0.952 41 H 0.092 0.908 42 H 0.048 0.952 43 H 0.087 0.913 44 H 0.054 0.946 45 H 0.025 0.975 46 H 0.208 0.792 47 H 0.059 0.941 48 H 0.212 0.788 49 H 0.248 0.752 50 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -27.177 -16.651 13.395 34.573 hybrid contribution 1.378 -0.321 -0.668 1.565 sum -25.799 -16.971 12.727 33.401 Atomic orbital electron populations 1.20824 0.85075 1.05466 1.04327 1.19813 0.99582 0.90082 1.03285 1.22565 0.90257 1.01590 0.91521 1.20028 0.94064 0.88656 1.11287 1.18014 0.84666 0.83574 0.79046 1.90841 1.23864 1.84072 1.45215 1.47623 1.18540 1.12443 1.54378 1.22968 0.81768 1.04913 1.00464 1.21391 0.94334 0.86759 0.96113 1.21032 0.95458 0.94335 0.96993 1.21475 0.98317 0.97034 0.99269 1.21804 0.98537 1.02111 0.95790 1.20727 0.92115 0.95194 0.88216 1.42600 1.48879 1.21901 1.24969 1.19671 1.15363 0.98059 1.04333 0.90626 1.25594 1.02787 1.00711 0.98021 1.69841 1.45509 1.31642 1.15338 0.85099 0.78655 0.79192 0.76570 1.21860 1.22006 1.19070 1.21742 0.86986 0.87891 1.06109 1.70671 1.16412 1.15642 1.22778 1.23136 0.99401 0.89530 1.03450 1.23310 0.87868 0.94458 1.15102 1.43092 1.07261 1.07821 1.46335 1.22360 0.79864 1.02768 0.99574 0.89349 0.88978 0.89193 0.79076 0.88175 0.89376 0.88819 0.86600 0.91673 0.94256 0.95443 0.95168 0.90754 0.95200 0.91307 0.94561 0.97519 0.79220 0.94102 0.78800 0.75201 0.77554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.04 9.97 71.24 0.71 0.75 16 2 C -0.12 -1.04 5.82 -20.22 -0.12 -1.16 16 3 C -0.04 -0.49 7.16 22.80 0.16 -0.33 16 4 C -0.13 -3.51 5.62 -18.58 -0.10 -3.61 16 5 C 0.56 17.88 5.67 86.60 0.49 18.37 16 6 O -0.56 -24.11 14.99 -4.15 -0.06 -24.17 16 7 N -0.60 -14.75 2.40 -850.89 -2.04 -16.79 16 8 C 0.04 0.51 7.94 127.77 1.01 1.52 16 9 C 0.14 3.90 4.63 86.38 0.40 4.30 16 10 C -0.08 -2.77 0.60 -52.18 -0.03 -2.80 16 11 C -0.10 -4.52 7.06 71.98 0.51 -4.01 16 12 C -0.13 -4.03 7.06 71.99 0.51 -3.52 16 13 C 0.16 7.14 5.15 86.38 0.44 7.59 16 14 N -0.74 -40.34 5.00 -343.46 -1.72 -42.05 16 15 C -0.24 -14.32 9.99 84.03 0.84 -13.48 16 16 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 17 C -0.08 -4.79 5.50 84.86 0.47 -4.33 16 18 N -0.97 -62.64 13.06 21.65 0.28 -62.35 16 19 Si 0.98 48.38 29.55 68.60 2.03 50.41 16 20 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 21 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 C 0.22 6.66 7.68 135.76 1.04 7.71 16 24 N -0.54 -19.49 11.16 -189.72 -2.12 -21.61 16 25 C -0.01 -0.18 11.83 83.65 0.99 0.81 16 26 C -0.08 -1.40 11.76 83.13 0.98 -0.42 16 27 N -0.37 -7.50 2.94 -347.22 -1.02 -8.52 16 28 C 0.08 0.79 10.48 83.30 0.87 1.66 16 29 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 30 H 0.09 -0.24 8.07 -2.39 -0.02 -0.26 16 31 H 0.09 -0.29 8.06 -2.39 -0.02 -0.31 16 32 H 0.19 1.24 5.07 -2.91 -0.01 1.22 16 33 H 0.10 0.56 7.58 -2.38 -0.02 0.54 16 34 H 0.09 1.10 5.82 -2.39 -0.01 1.08 16 35 H 0.09 1.02 4.62 -2.39 -0.01 1.01 16 36 H 0.12 2.44 8.07 -2.39 -0.02 2.42 16 37 H 0.06 2.18 7.35 -2.39 -0.02 2.16 16 38 H 0.04 1.68 6.22 -2.39 -0.01 1.67 16 39 H 0.03 1.33 6.86 -2.39 -0.02 1.31 16 40 H 0.03 1.43 7.85 -2.39 -0.02 1.41 16 41 H 0.07 2.03 8.10 -2.39 -0.02 2.01 16 42 H 0.03 1.18 6.86 -2.39 -0.02 1.16 16 43 H 0.07 1.87 5.89 -2.39 -0.01 1.85 16 44 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 46 H 0.37 21.84 5.36 -92.70 -0.50 21.34 16 47 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 48 H 0.20 3.95 8.06 -2.91 -0.02 3.92 16 49 H 0.23 1.59 8.06 -2.91 -0.02 1.56 16 50 H 0.21 0.18 8.04 -2.91 -0.02 0.16 16 Total: -1.00 -95.19 390.86 4.99 -90.19 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.47 Total: 25.83 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 9.18 Total: 9.06 kcal Atomic # 7 Polarization: -144.70 SS G_CDS: -6.62 Total: -151.32 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.06 Total: -24.17 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.03 Total: 50.41 kcal Total: -95.19 4.99 -90.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734018461.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.892 kcal (2) G-P(sol) polarization free energy of solvation -95.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds