Wall clock time and date at job start Wed Apr 1 2020 03:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40575 * 120.13214 * 2 1 4 4 C 1.34841 * 120.34204 * 179.97438 * 3 2 1 5 5 N 1.36681 * 120.64425 * 359.97328 * 4 3 2 6 6 C 1.36188 * 132.30085 * 180.35320 * 5 4 3 7 7 C 1.36571 * 107.09826 * 180.11786 * 6 5 4 8 8 C 1.47591 * 125.92115 * 179.84271 * 7 6 5 9 9 O 1.21593 * 119.99706 * 6.23534 * 8 7 6 10 10 N 1.34778 * 119.99912 * 186.22524 * 8 7 6 11 11 C 1.46497 * 120.00214 * 4.97240 * 10 8 7 12 12 C 1.46501 * 119.99536 * 185.24338 * 10 8 7 13 13 C 1.53007 * 109.47176 * 269.72548 * 12 10 8 14 14 C 1.53000 * 109.47292 * 300.00284 * 13 12 10 15 15 C 1.53003 * 109.46755 * 60.00623 * 13 12 10 16 16 C 1.52994 * 109.46904 * 180.02562 * 13 12 10 17 17 N 1.46505 * 109.46999 * 180.02562 * 16 13 12 18 18 C 1.36941 * 120.00046 * 180.02562 * 17 16 13 19 19 H 1.08003 * 119.99989 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00010 * 179.97438 * 18 17 16 21 21 N 1.31630 * 119.99922 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00301 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47096 * 89.99646 * 22 20 18 24 24 H 1.48498 * 109.46988 * 210.00281 * 22 20 18 25 25 H 1.48499 * 109.46815 * 329.99903 * 22 20 18 26 26 N 1.34580 * 108.16308 * 359.58564 * 7 6 5 27 27 C 1.32239 * 109.02353 * 0.26171 * 26 7 6 28 28 C 1.35896 * 120.13818 * 179.97438 * 2 1 3 29 29 H 1.09009 * 109.47436 * 90.00291 * 1 2 3 30 30 H 1.09003 * 109.46950 * 209.99952 * 1 2 3 31 31 H 1.08997 * 109.47442 * 329.99809 * 1 2 3 32 32 H 1.08004 * 119.82993 * 359.96519 * 3 2 1 33 33 H 1.08004 * 119.68043 * 180.02562 * 4 3 2 34 34 H 1.08007 * 126.44879 * 359.96399 * 6 5 4 35 35 H 1.09001 * 109.47070 * 275.62782 * 11 10 8 36 36 H 1.09002 * 109.46627 * 35.62741 * 11 10 8 37 37 H 1.09002 * 109.46939 * 155.62295 * 11 10 8 38 38 H 1.08994 * 109.47331 * 29.72702 * 12 10 8 39 39 H 1.08997 * 109.46821 * 149.73303 * 12 10 8 40 40 H 1.09006 * 109.47013 * 60.00050 * 14 13 12 41 41 H 1.08997 * 109.46748 * 179.97438 * 14 13 12 42 42 H 1.09000 * 109.47224 * 300.00153 * 14 13 12 43 43 H 1.09000 * 109.47306 * 59.99572 * 15 13 12 44 44 H 1.08994 * 109.46907 * 180.02562 * 15 13 12 45 45 H 1.09004 * 109.46650 * 299.99493 * 15 13 12 46 46 H 1.09000 * 109.47690 * 299.99918 * 16 13 12 47 47 H 1.08998 * 109.47667 * 60.00593 * 16 13 12 48 48 H 0.97004 * 119.99867 * 359.97438 * 17 16 13 49 49 H 0.96997 * 119.99933 * 180.02562 * 21 20 18 50 50 H 1.08003 * 120.32378 * 0.04535 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2126 1.2158 0.0000 4 6 3.5610 1.2207 0.0005 5 7 4.2620 0.0474 0.0016 6 6 5.5968 -0.2229 0.0085 7 6 5.7313 -1.5820 0.0032 8 6 7.0060 -2.3259 0.0044 9 8 8.0583 -1.7287 0.1248 10 7 7.0036 -3.6672 -0.1279 11 6 5.7468 -4.3760 -0.3817 12 6 8.2569 -4.4169 -0.0118 13 6 8.9047 -4.5442 -1.3921 14 6 7.9537 -5.2834 -2.3356 15 6 9.1947 -3.1493 -1.9500 16 6 10.2132 -5.3277 -1.2710 17 7 10.8338 -5.4491 -2.5925 18 6 12.0218 -6.1157 -2.7324 19 1 12.5011 -6.5522 -1.8686 20 6 12.6096 -6.2311 -3.9846 21 7 12.0247 -5.7003 -5.0376 22 14 14.2298 -7.1410 -4.1757 23 1 13.9625 -8.5770 -4.4430 24 1 14.9930 -6.5600 -5.3093 25 1 15.0218 -7.0091 -2.9265 26 7 4.5001 -2.1254 0.0026 27 6 3.6009 -1.1558 0.0015 28 6 2.1893 -1.1753 0.0005 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6720 2.1508 -0.0006 33 1 4.0924 2.1610 0.0009 34 1 6.3981 0.5012 0.0143 35 1 5.2379 -4.5631 0.5638 36 1 5.1096 -3.7672 -1.0231 37 1 5.9581 -5.3249 -0.8748 38 1 8.9343 -3.8903 0.6603 39 1 8.0503 -5.4106 0.3856 40 1 7.0212 -4.7255 -2.4220 41 1 8.4151 -5.3736 -3.3190 42 1 7.7472 -6.2771 -1.9382 43 1 9.8721 -2.6227 -1.2777 44 1 9.6557 -3.2400 -2.9334 45 1 8.2621 -2.5915 -2.0363 46 1 10.8909 -4.8015 -0.5987 47 1 10.0064 -6.3214 -0.8738 48 1 10.4028 -5.0579 -3.3685 49 1 12.4352 -5.7814 -5.9127 50 1 1.6568 -2.1149 0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734019582.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:45 Heat of formation + Delta-G solvation = 75.064369 kcal Electronic energy + Delta-G solvation = -30081.946474 eV Core-core repulsion = 26111.384870 eV Total energy + Delta-G solvation = -3970.561604 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.19384 -39.98779 -38.09921 -37.04782 -35.08902 -34.50484 -32.95105 -31.16124 -30.43907 -30.02946 -27.73543 -27.51895 -26.64480 -25.72350 -25.38909 -24.02997 -22.95383 -22.13913 -21.95520 -19.44351 -18.38627 -18.11832 -17.16015 -17.13273 -16.70302 -16.42531 -15.84784 -15.38718 -15.31105 -14.94300 -14.54435 -14.32614 -14.06432 -13.97794 -13.63846 -13.47667 -13.09318 -12.99822 -12.87965 -12.65268 -12.57362 -12.38976 -12.22780 -12.10735 -11.95912 -11.80925 -11.11065 -11.09154 -10.98639 -10.89256 -10.74409 -10.62992 -10.35454 -10.18769 -10.12293 -9.93183 -9.65028 -9.56736 -9.21798 -8.76501 -8.40612 -8.16665 -6.78451 -5.66304 -2.93307 0.23302 0.81529 1.87984 2.11669 2.96645 3.11898 3.47375 3.50203 3.55035 3.57061 3.68949 3.99601 4.23940 4.26836 4.57995 4.68306 4.69511 4.87992 5.02176 5.05776 5.09916 5.24770 5.30151 5.32577 5.41142 5.42121 5.56932 5.57243 5.66596 5.76658 5.80573 5.85953 5.92395 6.01709 6.07099 6.11057 6.20880 6.26661 6.32552 6.44414 6.56611 6.61571 6.70740 6.78068 6.87421 6.92073 7.08168 7.12995 7.32890 7.54246 7.79804 8.28441 8.53443 9.64262 10.24741 10.59631 11.56949 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.027790 B = 0.001986 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.309454 B =14096.236873 C =14223.362561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.071 4.071 3 C -0.137 4.137 4 C 0.060 3.940 5 N -0.367 5.367 6 C -0.020 4.020 7 C 0.015 3.985 8 C 0.594 3.406 9 O -0.528 6.528 10 N -0.591 5.591 11 C 0.084 3.916 12 C 0.128 3.872 13 C -0.085 4.085 14 C -0.136 4.136 15 C -0.121 4.121 16 C 0.165 3.835 17 N -0.728 5.728 18 C -0.233 4.233 19 H 0.069 0.931 20 C -0.017 4.017 21 N -0.935 5.935 22 Si 0.906 3.094 23 H -0.291 1.291 24 H -0.293 1.293 25 H -0.283 1.283 26 N -0.460 5.460 27 C 0.225 3.775 28 C -0.080 4.080 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.166 0.834 34 H 0.195 0.805 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.046 0.954 41 H 0.065 0.935 42 H 0.048 0.952 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.038 0.962 46 H 0.019 0.981 47 H 0.017 0.983 48 H 0.385 0.615 49 H 0.254 0.746 50 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.957 14.794 12.745 34.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.077 4.077 3 C -0.157 4.157 4 C -0.061 4.061 5 N -0.039 5.039 6 C -0.155 4.155 7 C -0.118 4.118 8 C 0.380 3.620 9 O -0.404 6.404 10 N -0.322 5.322 11 C -0.059 4.059 12 C 0.005 3.995 13 C -0.087 4.087 14 C -0.193 4.193 15 C -0.179 4.179 16 C 0.037 3.963 17 N -0.373 5.373 18 C -0.365 4.365 19 H 0.087 0.913 20 C -0.213 4.213 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.219 1.219 24 H -0.219 1.219 25 H -0.208 1.208 26 N -0.182 5.182 27 C -0.020 4.020 28 C -0.101 4.101 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.169 0.831 33 H 0.184 0.816 34 H 0.212 0.788 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.057 0.943 46 H 0.037 0.963 47 H 0.035 0.965 48 H 0.220 0.780 49 H 0.063 0.937 50 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -27.311 14.169 12.850 33.343 hybrid contribution 0.936 0.484 -0.493 1.163 sum -26.375 14.654 12.357 32.605 Atomic orbital electron populations 1.20779 0.89547 1.03476 1.03015 1.19768 0.97118 0.92002 0.98784 1.20756 0.92077 0.99396 1.03510 1.21673 0.93053 0.88743 1.02608 1.42772 1.07199 1.07822 1.46104 1.22625 0.83456 0.97962 1.11449 1.20702 0.92704 0.90973 1.07430 1.16883 0.85958 0.81889 0.77234 1.90833 1.31050 1.68193 1.50304 1.47556 1.09343 1.05649 1.69661 1.22077 0.84801 0.97397 1.01633 1.21616 0.84436 0.95706 0.97692 1.21108 0.96195 0.96987 0.94376 1.21879 0.98156 0.98777 1.00489 1.21714 1.00288 0.94515 1.01358 1.20588 0.90556 0.95538 0.89615 1.42400 1.24598 1.66565 1.03709 1.19255 0.97563 1.26366 0.93298 0.91276 1.24720 0.99143 1.01723 0.95679 1.69668 1.40039 1.50211 0.98521 0.86189 0.83673 0.79279 0.77080 1.21880 1.21895 1.20843 1.71122 0.97901 1.27994 1.21169 1.21077 0.94482 0.80324 1.06134 1.20146 0.87968 0.99713 1.02228 0.90452 0.90854 0.90976 0.83068 0.81636 0.78769 0.92753 0.89614 0.91205 0.89856 0.90429 0.93533 0.91577 0.93264 0.92465 0.92369 0.94336 0.96267 0.96493 0.77994 0.93665 0.83039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.30 10.02 36.00 0.36 0.06 16 2 C -0.07 -0.38 5.88 -104.58 -0.62 -1.00 16 3 C -0.14 -0.63 9.67 -39.91 -0.39 -1.02 16 4 C 0.06 0.36 10.93 -16.60 -0.18 0.18 16 5 N -0.37 -3.54 2.93 -62.37 -0.18 -3.73 16 6 C -0.02 -0.23 11.47 -16.22 -0.19 -0.41 16 7 C 0.01 0.20 6.57 -83.45 -0.55 -0.35 16 8 C 0.59 9.32 6.24 -12.44 -0.08 9.24 16 9 O -0.53 -9.55 14.30 5.28 0.08 -9.47 16 10 N -0.59 -8.58 2.39 -182.79 -0.44 -9.01 16 11 C 0.08 1.02 8.01 59.85 0.48 1.50 16 12 C 0.13 1.96 4.57 -4.04 -0.02 1.94 16 13 C -0.09 -1.53 0.60 -154.51 -0.09 -1.63 16 14 C -0.14 -2.34 7.07 37.16 0.26 -2.08 16 15 C -0.12 -2.37 6.90 37.16 0.26 -2.12 16 16 C 0.17 3.55 5.15 -4.04 -0.02 3.53 16 17 N -0.73 -19.21 5.01 -59.91 -0.30 -19.51 16 18 C -0.23 -6.78 9.99 -15.06 -0.15 -6.93 16 19 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 20 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 21 N -0.94 -29.18 13.06 55.49 0.72 -28.46 16 22 Si 0.91 23.18 29.55 -169.99 -5.02 18.16 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 25 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 26 N -0.46 -5.86 8.04 -9.35 -0.08 -5.94 16 27 C 0.22 2.41 7.79 -156.03 -1.22 1.20 16 28 C -0.08 -0.61 9.75 -39.30 -0.38 -0.99 16 29 H 0.08 0.17 8.14 -51.92 -0.42 -0.25 16 30 H 0.07 0.17 8.08 -51.93 -0.42 -0.25 16 31 H 0.07 0.12 8.09 -51.93 -0.42 -0.31 16 32 H 0.15 0.24 8.06 -52.48 -0.42 -0.18 16 33 H 0.17 0.49 8.06 -52.48 -0.42 0.07 16 34 H 0.20 1.83 8.06 -52.48 -0.42 1.41 16 35 H 0.05 0.62 8.12 -51.93 -0.42 0.20 16 36 H 0.09 1.09 5.91 -51.93 -0.31 0.78 16 37 H 0.07 0.80 6.29 -51.93 -0.33 0.47 16 38 H 0.08 1.35 7.49 -51.93 -0.39 0.96 16 39 H 0.08 1.04 8.07 -51.93 -0.42 0.62 16 40 H 0.05 0.72 6.07 -51.93 -0.32 0.41 16 41 H 0.07 1.33 6.86 -51.93 -0.36 0.97 16 42 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 43 H 0.06 1.17 7.64 -51.93 -0.40 0.78 16 44 H 0.06 1.26 6.86 -51.93 -0.36 0.91 16 45 H 0.04 0.72 6.08 -51.93 -0.32 0.40 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.38 10.66 5.36 -40.82 -0.22 10.44 16 49 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 50 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 LS Contribution 394.52 15.07 5.95 5.95 Total: -1.00 -35.70 394.52 -9.47 -45.17 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -7.59 Total: 6.33 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -2.61 Total: 0.51 kcal Atomic # 7 Polarization: -66.38 SS G_CDS: -0.27 Total: -66.65 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.08 Total: -9.47 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.70 -9.47 -45.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734019582.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.236 kcal (2) G-P(sol) polarization free energy of solvation -35.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds