Wall clock time and date at job start Wed Apr 1 2020 03:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40575 * 120.13214 * 2 1 4 4 C 1.34841 * 120.34204 * 179.97438 * 3 2 1 5 5 N 1.36681 * 120.64425 * 359.97328 * 4 3 2 6 6 C 1.36188 * 132.30085 * 180.35320 * 5 4 3 7 7 C 1.36571 * 107.09826 * 180.11786 * 6 5 4 8 8 C 1.47591 * 125.92115 * 179.84271 * 7 6 5 9 9 O 1.21593 * 119.99706 * 6.23534 * 8 7 6 10 10 N 1.34778 * 119.99912 * 186.22524 * 8 7 6 11 11 C 1.46497 * 120.00214 * 4.97240 * 10 8 7 12 12 C 1.46501 * 119.99536 * 185.24338 * 10 8 7 13 13 C 1.53007 * 109.47176 * 269.72548 * 12 10 8 14 14 C 1.53000 * 109.47292 * 300.00284 * 13 12 10 15 15 C 1.53003 * 109.46755 * 60.00623 * 13 12 10 16 16 C 1.52994 * 109.46904 * 180.02562 * 13 12 10 17 17 N 1.46505 * 109.46999 * 180.02562 * 16 13 12 18 18 C 1.36941 * 120.00046 * 180.02562 * 17 16 13 19 19 H 1.08003 * 119.99989 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00010 * 179.97438 * 18 17 16 21 21 N 1.31630 * 119.99922 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00301 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47096 * 89.99646 * 22 20 18 24 24 H 1.48498 * 109.46988 * 210.00281 * 22 20 18 25 25 H 1.48499 * 109.46815 * 329.99903 * 22 20 18 26 26 N 1.34580 * 108.16308 * 359.58564 * 7 6 5 27 27 C 1.32239 * 109.02353 * 0.26171 * 26 7 6 28 28 C 1.35896 * 120.13818 * 179.97438 * 2 1 3 29 29 H 1.09009 * 109.47436 * 90.00291 * 1 2 3 30 30 H 1.09003 * 109.46950 * 209.99952 * 1 2 3 31 31 H 1.08997 * 109.47442 * 329.99809 * 1 2 3 32 32 H 1.08004 * 119.82993 * 359.96519 * 3 2 1 33 33 H 1.08004 * 119.68043 * 180.02562 * 4 3 2 34 34 H 1.08007 * 126.44879 * 359.96399 * 6 5 4 35 35 H 1.09001 * 109.47070 * 275.62782 * 11 10 8 36 36 H 1.09002 * 109.46627 * 35.62741 * 11 10 8 37 37 H 1.09002 * 109.46939 * 155.62295 * 11 10 8 38 38 H 1.08994 * 109.47331 * 29.72702 * 12 10 8 39 39 H 1.08997 * 109.46821 * 149.73303 * 12 10 8 40 40 H 1.09006 * 109.47013 * 60.00050 * 14 13 12 41 41 H 1.08997 * 109.46748 * 179.97438 * 14 13 12 42 42 H 1.09000 * 109.47224 * 300.00153 * 14 13 12 43 43 H 1.09000 * 109.47306 * 59.99572 * 15 13 12 44 44 H 1.08994 * 109.46907 * 180.02562 * 15 13 12 45 45 H 1.09004 * 109.46650 * 299.99493 * 15 13 12 46 46 H 1.09000 * 109.47690 * 299.99918 * 16 13 12 47 47 H 1.08998 * 109.47667 * 60.00593 * 16 13 12 48 48 H 0.97004 * 119.99867 * 359.97438 * 17 16 13 49 49 H 0.96997 * 119.99933 * 180.02562 * 21 20 18 50 50 H 1.08003 * 120.32378 * 0.04535 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2126 1.2158 0.0000 4 6 3.5610 1.2207 0.0005 5 7 4.2620 0.0474 0.0016 6 6 5.5968 -0.2229 0.0085 7 6 5.7313 -1.5820 0.0032 8 6 7.0060 -2.3259 0.0044 9 8 8.0583 -1.7287 0.1248 10 7 7.0036 -3.6672 -0.1279 11 6 5.7468 -4.3760 -0.3817 12 6 8.2569 -4.4169 -0.0118 13 6 8.9047 -4.5442 -1.3921 14 6 7.9537 -5.2834 -2.3356 15 6 9.1947 -3.1493 -1.9500 16 6 10.2132 -5.3277 -1.2710 17 7 10.8338 -5.4491 -2.5925 18 6 12.0218 -6.1157 -2.7324 19 1 12.5011 -6.5522 -1.8686 20 6 12.6096 -6.2311 -3.9846 21 7 12.0247 -5.7003 -5.0376 22 14 14.2298 -7.1410 -4.1757 23 1 13.9625 -8.5770 -4.4430 24 1 14.9930 -6.5600 -5.3093 25 1 15.0218 -7.0091 -2.9265 26 7 4.5001 -2.1254 0.0026 27 6 3.6009 -1.1558 0.0015 28 6 2.1893 -1.1753 0.0005 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6720 2.1508 -0.0006 33 1 4.0924 2.1610 0.0009 34 1 6.3981 0.5012 0.0143 35 1 5.2379 -4.5631 0.5638 36 1 5.1096 -3.7672 -1.0231 37 1 5.9581 -5.3249 -0.8748 38 1 8.9343 -3.8903 0.6603 39 1 8.0503 -5.4106 0.3856 40 1 7.0212 -4.7255 -2.4220 41 1 8.4151 -5.3736 -3.3190 42 1 7.7472 -6.2771 -1.9382 43 1 9.8721 -2.6227 -1.2777 44 1 9.6557 -3.2400 -2.9334 45 1 8.2621 -2.5915 -2.0363 46 1 10.8909 -4.8015 -0.5987 47 1 10.0064 -6.3214 -0.8738 48 1 10.4028 -5.0579 -3.3685 49 1 12.4352 -5.7814 -5.9127 50 1 1.6568 -2.1149 0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734019582.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:44 Heat of formation + Delta-G solvation = 54.607383 kcal Electronic energy + Delta-G solvation = -30082.833556 eV Core-core repulsion = 26111.384870 eV Total energy + Delta-G solvation = -3971.448686 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.90811 -41.18256 -38.93735 -38.30859 -36.46047 -35.32304 -34.71853 -32.27908 -31.71397 -30.89116 -28.92078 -28.39398 -27.95096 -27.30700 -26.75844 -25.07676 -24.20578 -23.25788 -22.67614 -20.53651 -19.83112 -19.16195 -18.93474 -17.86980 -17.62892 -17.31313 -16.95629 -16.65616 -16.40411 -15.93888 -15.56177 -15.54826 -15.35133 -15.19269 -14.92438 -14.42380 -14.39052 -14.19859 -14.09927 -13.83651 -13.71714 -13.38647 -13.24967 -12.94884 -12.90424 -12.80148 -12.64569 -12.55204 -12.47816 -12.46102 -12.23250 -12.10808 -11.67409 -11.64287 -11.59610 -11.51349 -11.35274 -10.92419 -10.87132 -9.94771 -9.57275 -8.95771 -8.84702 -7.92845 -5.20798 -0.33318 0.17516 1.01103 1.44566 1.46637 1.49165 1.57569 2.04056 2.28748 2.53616 2.57809 2.97783 3.39364 3.40281 3.70844 3.77312 3.83786 3.88977 3.97732 4.07997 4.14981 4.26995 4.28201 4.43286 4.45103 4.49370 4.57644 4.67684 4.70416 4.81421 4.83034 4.85607 4.90000 4.92390 4.94998 5.01387 5.06364 5.16114 5.17476 5.20251 5.22025 5.33417 5.42637 5.45026 5.49746 5.53423 5.56562 5.61538 5.95858 6.29347 6.35058 6.59750 7.13093 7.35561 8.12876 8.37025 9.31114 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.027790 B = 0.001986 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.309454 B =14096.236873 C =14223.362561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.052 4.052 3 C -0.127 4.127 4 C 0.044 3.956 5 N -0.369 5.369 6 C -0.024 4.024 7 C -0.017 4.017 8 C 0.589 3.411 9 O -0.563 6.563 10 N -0.591 5.591 11 C 0.089 3.911 12 C 0.135 3.865 13 C -0.076 4.076 14 C -0.126 4.126 15 C -0.106 4.106 16 C 0.164 3.836 17 N -0.739 5.739 18 C -0.242 4.242 19 H 0.076 0.924 20 C -0.079 4.079 21 N -0.972 5.972 22 Si 0.976 3.024 23 H -0.285 1.285 24 H -0.296 1.296 25 H -0.270 1.270 26 N -0.485 5.485 27 C 0.216 3.784 28 C -0.111 4.111 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.191 0.809 33 H 0.196 0.804 34 H 0.206 0.794 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.033 0.967 42 H 0.065 0.935 43 H 0.041 0.959 44 H 0.028 0.972 45 H 0.043 0.957 46 H 0.013 0.987 47 H 0.031 0.969 48 H 0.375 0.625 49 H 0.250 0.750 50 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.593 15.552 13.935 37.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.058 4.058 3 C -0.147 4.147 4 C -0.076 4.076 5 N -0.040 5.040 6 C -0.160 4.160 7 C -0.149 4.149 8 C 0.377 3.623 9 O -0.442 6.442 10 N -0.321 5.321 11 C -0.053 4.053 12 C 0.012 3.988 13 C -0.077 4.077 14 C -0.183 4.183 15 C -0.163 4.163 16 C 0.037 3.963 17 N -0.383 5.383 18 C -0.374 4.374 19 H 0.094 0.906 20 C -0.271 4.271 21 N -0.623 5.623 22 Si 0.805 3.195 23 H -0.212 1.212 24 H -0.223 1.223 25 H -0.195 1.195 26 N -0.208 5.208 27 C -0.030 4.030 28 C -0.131 4.131 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.208 0.792 33 H 0.213 0.787 34 H 0.222 0.778 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.123 0.877 40 H 0.081 0.919 41 H 0.052 0.948 42 H 0.084 0.916 43 H 0.060 0.940 44 H 0.047 0.953 45 H 0.062 0.938 46 H 0.031 0.969 47 H 0.049 0.951 48 H 0.209 0.791 49 H 0.059 0.941 50 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -29.986 14.917 14.083 36.332 hybrid contribution 1.522 0.408 -0.809 1.772 sum -28.464 15.326 13.274 34.947 Atomic orbital electron populations 1.20890 0.87244 1.04738 1.03962 1.20238 0.98702 0.91515 0.95326 1.21318 0.91616 1.00681 1.01083 1.22406 0.93955 0.88641 1.02591 1.42898 1.06561 1.08761 1.45806 1.22736 0.84632 0.97458 1.11190 1.20479 0.92362 0.91839 1.10196 1.17252 0.86424 0.82181 0.76419 1.90797 1.32449 1.68928 1.52058 1.47616 1.09644 1.05549 1.69284 1.22120 0.83697 0.97302 1.02174 1.21471 0.84739 0.97135 0.95411 1.21005 0.95086 0.95280 0.96356 1.21777 0.98202 0.99870 0.98445 1.21538 0.99793 0.95698 0.99281 1.20726 0.91752 0.96544 0.87264 1.42590 1.24294 1.66212 1.05176 1.19677 0.98337 1.25817 0.93564 0.90637 1.25587 1.02859 1.03218 0.95464 1.69840 1.41694 1.51953 0.98791 0.85096 0.79415 0.77906 0.77087 1.21214 1.22307 1.19542 1.71000 0.97752 1.29081 1.22922 1.21556 0.95474 0.80457 1.05481 1.20392 0.86720 1.01307 1.04651 0.89439 0.90369 0.89043 0.79171 0.78700 0.77763 0.91818 0.90099 0.90125 0.90899 0.87689 0.91854 0.94822 0.91559 0.93968 0.95282 0.93820 0.96875 0.95142 0.79144 0.94117 0.82140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.19 10.02 71.23 0.71 0.53 16 2 C -0.05 -0.40 5.88 -19.84 -0.12 -0.52 16 3 C -0.13 -0.70 9.67 22.06 0.21 -0.49 16 4 C 0.04 0.42 10.93 83.16 0.91 1.33 16 5 N -0.37 -6.82 2.93 -351.25 -1.03 -7.85 16 6 C -0.02 -0.56 11.47 83.63 0.96 0.40 16 7 C -0.02 -0.48 6.57 40.80 0.27 -0.21 16 8 C 0.59 19.09 6.24 86.71 0.54 19.64 16 9 O -0.56 -21.32 14.30 -4.01 -0.06 -21.38 16 10 N -0.59 -17.15 2.39 -850.47 -2.04 -19.18 16 11 C 0.09 2.10 8.01 127.77 1.02 3.13 16 12 C 0.14 4.10 4.57 86.38 0.39 4.50 16 13 C -0.08 -2.76 0.60 -52.18 -0.03 -2.79 16 14 C -0.13 -4.33 7.07 71.98 0.51 -3.82 16 15 C -0.11 -4.33 6.90 71.98 0.50 -3.83 16 16 C 0.16 7.11 5.15 86.38 0.44 7.55 16 17 N -0.74 -39.94 5.01 -343.45 -1.72 -41.66 16 18 C -0.24 -14.20 9.99 84.03 0.84 -13.36 16 19 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 20 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 21 N -0.97 -62.08 13.06 21.65 0.28 -61.80 16 22 Si 0.98 48.10 29.55 68.60 2.03 50.13 16 23 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 24 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 25 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 26 N -0.49 -12.54 8.04 -183.49 -1.47 -14.02 16 27 C 0.22 4.55 7.79 134.20 1.05 5.59 16 28 C -0.11 -1.53 9.75 22.45 0.22 -1.31 16 29 H 0.09 0.06 8.14 -2.38 -0.02 0.04 16 30 H 0.08 0.11 8.08 -2.39 -0.02 0.09 16 31 H 0.09 -0.14 8.09 -2.39 -0.02 -0.16 16 32 H 0.19 -0.44 8.06 -2.91 -0.02 -0.46 16 33 H 0.20 0.56 8.06 -2.91 -0.02 0.53 16 34 H 0.21 3.99 8.06 -2.91 -0.02 3.97 16 35 H 0.06 1.39 8.12 -2.39 -0.02 1.37 16 36 H 0.08 2.05 5.91 -2.39 -0.01 2.03 16 37 H 0.08 1.70 6.29 -2.39 -0.02 1.69 16 38 H 0.07 2.39 7.49 -2.39 -0.02 2.37 16 39 H 0.10 2.62 8.07 -2.39 -0.02 2.60 16 40 H 0.06 1.95 6.07 -2.38 -0.01 1.93 16 41 H 0.03 1.37 6.86 -2.39 -0.02 1.36 16 42 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 43 H 0.04 1.82 7.64 -2.39 -0.02 1.80 16 44 H 0.03 1.32 6.86 -2.39 -0.02 1.31 16 45 H 0.04 1.71 6.08 -2.39 -0.01 1.70 16 46 H 0.01 0.59 8.14 -2.39 -0.02 0.58 16 47 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.38 21.61 5.36 -92.71 -0.50 21.11 16 49 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 50 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -80.21 394.52 5.34 -74.87 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.45 Total: 28.86 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 8.90 Total: 12.03 kcal Atomic # 7 Polarization: -138.53 SS G_CDS: -5.98 Total: -144.51 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.06 Total: -21.38 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -80.21 5.34 -74.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734019582.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.477 kcal (2) G-P(sol) polarization free energy of solvation -80.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds