Wall clock time and date at job start Wed Apr 1 2020 03:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.40155 * 120.29678 * 2 1 4 4 C 1.35187 * 120.32071 * 180.02562 * 3 2 1 5 5 N 1.36242 * 120.70533 * 0.02562 * 4 3 2 6 6 N 1.40013 * 132.01221 * 180.02562 * 5 4 3 7 7 C 1.30742 * 109.60540 * 179.68705 * 6 5 4 8 8 C 1.40559 * 108.73950 * 0.45670 * 7 6 5 9 9 C 1.46566 * 126.57629 * 179.81418 * 8 7 6 10 10 O 1.21723 * 119.99903 * 179.68734 * 9 8 7 11 11 N 1.34777 * 119.99859 * 359.96100 * 9 8 7 12 12 C 1.46505 * 119.99724 * 179.72469 * 11 9 8 13 13 H 1.09008 * 109.47120 * 325.00024 * 12 11 9 14 14 C 1.52998 * 109.47085 * 205.00369 * 12 11 9 15 15 N 1.46504 * 109.47491 * 54.99943 * 14 12 11 16 16 C 1.36932 * 120.00237 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00149 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00003 * 180.02562 * 16 15 14 19 19 N 1.31614 * 120.00050 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 120.00043 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.46946 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47058 * 119.99614 * 20 18 16 23 23 H 1.48500 * 109.46872 * 239.99585 * 20 18 16 24 24 C 1.52996 * 109.47130 * 85.00158 * 12 11 9 25 25 C 1.52997 * 109.47282 * 60.00207 * 24 12 11 26 26 C 1.52998 * 109.47178 * 179.97438 * 24 12 11 27 27 C 1.52998 * 109.47309 * 300.00074 * 24 12 11 28 28 C 1.36575 * 120.07811 * 359.97438 * 5 4 3 29 29 C 1.36448 * 120.29364 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.46832 * 269.98175 * 1 2 3 31 31 H 1.09000 * 109.46786 * 29.97895 * 1 2 3 32 32 H 1.08998 * 109.46955 * 149.97763 * 1 2 3 33 33 H 1.07999 * 119.84224 * 0.04416 * 3 2 1 34 34 H 1.08001 * 119.64739 * 180.02562 * 4 3 2 35 35 H 1.08003 * 125.63257 * 180.26870 * 7 6 5 36 36 H 0.97000 * 120.00483 * 359.72901 * 11 9 8 37 37 H 1.09003 * 109.47541 * 175.00064 * 14 12 11 38 38 H 1.09000 * 109.47194 * 294.99664 * 14 12 11 39 39 H 0.96996 * 119.99334 * 359.97438 * 15 14 12 40 40 H 0.97000 * 120.00334 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.47551 * 59.99627 * 25 24 12 42 42 H 1.08992 * 109.47432 * 180.02562 * 25 24 12 43 43 H 1.09003 * 109.46936 * 299.99910 * 25 24 12 44 44 H 1.09008 * 109.46993 * 59.99914 * 26 24 12 45 45 H 1.08997 * 109.47562 * 179.97438 * 26 24 12 46 46 H 1.08998 * 109.47238 * 300.00077 * 26 24 12 47 47 H 1.08998 * 109.47497 * 59.99782 * 27 24 12 48 48 H 1.08997 * 109.47268 * 180.02562 * 27 24 12 49 49 H 1.09008 * 109.46859 * 300.00084 * 27 24 12 50 50 H 1.08002 * 120.37666 * 359.96220 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.2101 0.0000 4 6 3.5660 1.2107 -0.0005 5 7 4.2621 0.0396 -0.0016 6 7 5.6352 -0.2344 -0.0018 7 6 5.8244 -1.5280 0.0037 8 6 4.5728 -2.1675 -0.0027 9 6 4.3305 -3.6130 -0.0034 10 8 3.1903 -4.0390 -0.0035 11 7 5.3703 -4.4705 0.0017 12 6 5.1282 -5.9154 0.0071 13 1 4.2369 -6.1322 0.5960 14 6 6.3322 -6.6320 0.6217 15 7 6.6026 -6.0801 1.9515 16 6 7.6417 -6.5689 2.6974 17 1 8.2617 -7.3616 2.3055 18 6 7.8975 -6.0463 3.9577 19 7 7.1417 -5.0806 4.4355 20 14 9.3147 -6.7136 4.9755 21 1 10.0051 -7.7882 4.2181 22 1 10.2739 -5.6180 5.2667 23 1 8.7913 -7.2653 6.2510 24 6 4.9222 -6.4034 -1.4282 25 6 6.1732 -6.0991 -2.2548 26 6 4.6699 -7.9124 -1.4227 27 6 3.7182 -5.6867 -2.0428 28 6 3.5960 -1.1527 -0.0016 29 6 2.1953 -1.1782 -0.0005 30 1 -0.3633 -0.0003 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6764 2.1467 0.0007 34 1 4.0998 2.1495 -0.0001 35 1 6.7841 -2.0235 0.0090 36 1 6.2790 -4.1311 0.0019 37 1 6.1164 -7.6970 0.7073 38 1 7.2047 -6.4883 -0.0157 39 1 6.0459 -5.3679 2.3033 40 1 7.3206 -4.7151 5.3160 41 1 7.0311 -6.6096 -1.8170 42 1 6.0264 -6.4463 -3.2774 43 1 6.3534 -5.0241 -2.2588 44 1 3.7788 -8.1296 -0.8336 45 1 4.5228 -8.2600 -2.4452 46 1 5.5280 -8.4226 -0.9850 47 1 3.8983 -4.6118 -2.0468 48 1 3.5712 -6.0347 -3.0652 49 1 2.8269 -5.9036 -1.4538 50 1 1.6663 -2.1197 -0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734560791.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:29 Heat of formation + Delta-G solvation = 68.335012 kcal Electronic energy + Delta-G solvation = -30945.356936 eV Core-core repulsion = 26974.503525 eV Total energy + Delta-G solvation = -3970.853411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.18969 -39.72096 -37.80526 -37.03950 -34.36237 -33.68810 -33.01194 -31.42899 -31.02005 -29.55191 -27.80409 -27.28924 -27.04507 -26.36364 -24.08103 -23.57319 -22.51048 -22.02987 -21.29172 -19.89965 -18.47199 -17.92892 -17.08557 -16.79518 -16.19391 -15.88447 -15.66086 -15.30604 -15.13164 -14.72287 -14.57234 -13.86879 -13.79818 -13.72115 -13.50318 -13.46035 -13.26244 -13.03992 -12.84356 -12.62497 -12.16619 -12.04676 -11.99738 -11.85397 -11.72198 -11.58784 -11.28145 -11.14638 -11.02064 -10.87971 -10.80215 -10.64786 -10.46505 -10.32020 -10.15140 -9.84952 -9.70085 -9.44192 -9.40203 -8.85816 -8.44609 -7.65274 -6.89787 -5.73891 -3.03251 0.52143 0.89528 2.07619 2.27061 3.07468 3.44255 3.49979 3.52301 3.66834 3.87992 4.13999 4.33253 4.43581 4.59949 4.66686 4.92149 5.03451 5.04603 5.13833 5.21884 5.24522 5.26294 5.30168 5.48447 5.53975 5.58387 5.64615 5.67425 5.79056 5.84975 5.89608 5.98794 6.00716 6.12585 6.13385 6.17480 6.20733 6.25521 6.26798 6.37788 6.40726 6.54837 6.55619 6.60996 6.70864 6.75081 6.84092 7.11972 7.40794 7.72035 8.08161 8.43814 8.77937 9.55738 10.13213 10.48504 11.48265 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009471 B = 0.003520 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.700080 B = 7952.579084 C = 9784.974602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.050 4.050 3 C -0.160 4.160 4 C 0.112 3.888 5 N -0.271 5.271 6 N -0.321 5.321 7 C 0.124 3.876 8 C -0.303 4.303 9 C 0.601 3.399 10 O -0.555 6.555 11 N -0.705 5.705 12 C 0.153 3.847 13 H 0.086 0.914 14 C 0.141 3.859 15 N -0.731 5.731 16 C -0.240 4.240 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.929 5.929 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.076 4.076 25 C -0.141 4.141 26 C -0.140 4.140 27 C -0.128 4.128 28 C 0.164 3.836 29 C -0.106 4.106 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.155 0.845 34 H 0.170 0.830 35 H 0.199 0.801 36 H 0.400 0.600 37 H 0.034 0.966 38 H 0.028 0.972 39 H 0.386 0.614 40 H 0.254 0.746 41 H 0.061 0.939 42 H 0.047 0.953 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.051 0.949 46 H 0.061 0.939 47 H 0.053 0.947 48 H 0.038 0.962 49 H 0.061 0.939 50 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.245 10.787 -14.716 21.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.056 4.056 3 C -0.182 4.182 4 C -0.014 4.014 5 N -0.035 5.035 6 N -0.142 5.142 7 C -0.056 4.056 8 C -0.318 4.318 9 C 0.389 3.611 10 O -0.436 6.436 11 N -0.354 5.354 12 C 0.048 3.952 13 H 0.104 0.896 14 C 0.014 3.986 15 N -0.376 5.376 16 C -0.371 4.371 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.578 5.578 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.078 4.078 25 C -0.198 4.198 26 C -0.198 4.198 27 C -0.185 4.185 28 C 0.043 3.957 29 C -0.125 4.125 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.173 0.827 34 H 0.188 0.812 35 H 0.216 0.784 36 H 0.234 0.766 37 H 0.052 0.948 38 H 0.046 0.954 39 H 0.220 0.780 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.057 0.943 49 H 0.080 0.920 50 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -11.161 11.480 -14.659 21.708 hybrid contribution 0.893 -0.598 0.917 1.413 sum -10.268 10.882 -13.742 20.315 Atomic orbital electron populations 1.20821 0.89595 1.03500 1.03168 1.20026 0.97285 0.92187 0.96071 1.20781 0.91839 0.99552 1.06041 1.21507 0.92014 0.88408 0.99481 1.46073 1.06480 1.05260 1.45709 1.77586 0.87874 1.17152 1.31615 1.24141 0.98992 0.90341 0.92112 1.19811 0.91223 0.93836 1.26914 1.16701 0.84919 0.83926 0.75511 1.90727 1.21863 1.78927 1.52061 1.45634 1.08901 1.06254 1.74635 1.21221 1.00202 0.79100 0.94670 0.89567 1.21099 0.93611 0.95969 0.87969 1.42377 1.36883 1.44426 1.13908 1.19244 1.05882 1.14970 0.97002 0.91174 1.24733 0.99396 0.98979 0.97709 1.69682 1.40552 1.29058 1.18482 0.86154 0.81914 0.77975 0.80358 1.20586 1.21945 1.21950 1.20894 0.95918 0.95639 0.95318 1.21908 0.97506 1.01508 0.98916 1.21884 1.02083 0.94605 1.01238 1.21873 0.97588 1.00233 0.98845 1.19277 0.92948 0.85693 0.97764 1.20747 0.90029 1.00156 1.01570 0.90237 0.90951 0.90637 0.82729 0.81241 0.78425 0.76556 0.94809 0.95440 0.77976 0.93622 0.91963 0.93352 0.92860 0.92611 0.93027 0.91956 0.92764 0.94286 0.92026 0.82191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.03 36.01 0.36 -0.37 16 2 C -0.05 -0.48 5.89 -104.55 -0.62 -1.09 16 3 C -0.16 -1.27 9.67 -39.95 -0.39 -1.66 16 4 C 0.11 1.10 11.17 -16.68 -0.19 0.92 16 5 N -0.27 -3.77 3.86 -10.55 -0.04 -3.81 16 6 N -0.32 -4.92 12.57 30.75 0.39 -4.53 16 7 C 0.12 1.87 11.44 -17.14 -0.20 1.67 16 8 C -0.30 -4.94 6.17 -104.68 -0.65 -5.59 16 9 C 0.60 10.49 6.14 -12.90 -0.08 10.41 16 10 O -0.56 -10.61 12.82 5.17 0.07 -10.55 16 11 N -0.71 -11.69 3.63 -55.14 -0.20 -11.89 16 12 C 0.15 2.60 1.69 -67.93 -0.11 2.49 16 13 H 0.09 1.69 7.58 -51.92 -0.39 1.29 16 14 C 0.14 2.74 5.10 -4.04 -0.02 2.72 16 15 N -0.73 -18.10 5.43 -59.91 -0.33 -18.43 16 16 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 20 Si 0.90 22.39 29.55 -169.99 -5.02 17.37 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 C -0.08 -1.07 0.62 -154.51 -0.10 -1.17 16 25 C -0.14 -1.81 7.97 37.16 0.30 -1.52 16 26 C -0.14 -1.83 8.12 37.16 0.30 -1.52 16 27 C -0.13 -1.85 7.00 37.16 0.26 -1.59 16 28 C 0.16 2.48 6.76 -84.07 -0.57 1.91 16 29 C -0.11 -1.36 9.38 -39.53 -0.37 -1.73 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 32 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 33 H 0.16 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.20 2.47 7.46 -52.48 -0.39 2.08 16 36 H 0.40 6.34 7.52 -40.82 -0.31 6.03 16 37 H 0.03 0.67 6.71 -51.93 -0.35 0.32 16 38 H 0.03 0.52 6.17 -51.93 -0.32 0.20 16 39 H 0.39 10.33 7.33 -40.82 -0.30 10.03 16 40 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.06 0.82 6.32 -51.93 -0.33 0.49 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.05 0.68 7.60 -51.93 -0.39 0.29 16 44 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.82 6.54 -51.93 -0.34 0.48 16 47 H 0.05 0.85 5.78 -51.93 -0.30 0.55 16 48 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.06 0.97 7.53 -51.92 -0.39 0.58 16 50 H 0.16 2.15 7.12 -52.49 -0.37 1.78 16 LS Contribution 397.69 15.07 5.99 5.99 Total: -1.00 -34.09 397.69 -8.26 -42.35 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -7.53 Total: 14.27 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -2.31 Total: -3.31 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: 0.54 Total: -66.13 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.07 Total: -10.55 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.09 -8.26 -42.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734560791.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.685 kcal (2) G-P(sol) polarization free energy of solvation -34.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds