Wall clock time and date at job start Wed Apr 1 2020 03:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.40155 * 120.29678 * 2 1 4 4 C 1.35187 * 120.32071 * 180.02562 * 3 2 1 5 5 N 1.36242 * 120.70533 * 0.02562 * 4 3 2 6 6 N 1.40013 * 132.01221 * 180.02562 * 5 4 3 7 7 C 1.30742 * 109.60540 * 179.68705 * 6 5 4 8 8 C 1.40559 * 108.73950 * 0.45670 * 7 6 5 9 9 C 1.46566 * 126.57629 * 179.81418 * 8 7 6 10 10 O 1.21723 * 119.99903 * 179.68734 * 9 8 7 11 11 N 1.34777 * 119.99859 * 359.96100 * 9 8 7 12 12 C 1.46505 * 119.99724 * 179.72469 * 11 9 8 13 13 H 1.09008 * 109.47120 * 325.00024 * 12 11 9 14 14 C 1.52998 * 109.47085 * 205.00369 * 12 11 9 15 15 N 1.46504 * 109.47491 * 54.99943 * 14 12 11 16 16 C 1.36932 * 120.00237 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00149 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00003 * 180.02562 * 16 15 14 19 19 N 1.31614 * 120.00050 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 120.00043 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.46946 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47058 * 119.99614 * 20 18 16 23 23 H 1.48500 * 109.46872 * 239.99585 * 20 18 16 24 24 C 1.52996 * 109.47130 * 85.00158 * 12 11 9 25 25 C 1.52997 * 109.47282 * 60.00207 * 24 12 11 26 26 C 1.52998 * 109.47178 * 179.97438 * 24 12 11 27 27 C 1.52998 * 109.47309 * 300.00074 * 24 12 11 28 28 C 1.36575 * 120.07811 * 359.97438 * 5 4 3 29 29 C 1.36448 * 120.29364 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.46832 * 269.98175 * 1 2 3 31 31 H 1.09000 * 109.46786 * 29.97895 * 1 2 3 32 32 H 1.08998 * 109.46955 * 149.97763 * 1 2 3 33 33 H 1.07999 * 119.84224 * 0.04416 * 3 2 1 34 34 H 1.08001 * 119.64739 * 180.02562 * 4 3 2 35 35 H 1.08003 * 125.63257 * 180.26870 * 7 6 5 36 36 H 0.97000 * 120.00483 * 359.72901 * 11 9 8 37 37 H 1.09003 * 109.47541 * 175.00064 * 14 12 11 38 38 H 1.09000 * 109.47194 * 294.99664 * 14 12 11 39 39 H 0.96996 * 119.99334 * 359.97438 * 15 14 12 40 40 H 0.97000 * 120.00334 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.47551 * 59.99627 * 25 24 12 42 42 H 1.08992 * 109.47432 * 180.02562 * 25 24 12 43 43 H 1.09003 * 109.46936 * 299.99910 * 25 24 12 44 44 H 1.09008 * 109.46993 * 59.99914 * 26 24 12 45 45 H 1.08997 * 109.47562 * 179.97438 * 26 24 12 46 46 H 1.08998 * 109.47238 * 300.00077 * 26 24 12 47 47 H 1.08998 * 109.47497 * 59.99782 * 27 24 12 48 48 H 1.08997 * 109.47268 * 180.02562 * 27 24 12 49 49 H 1.09008 * 109.46859 * 300.00084 * 27 24 12 50 50 H 1.08002 * 120.37666 * 359.96220 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.2101 0.0000 4 6 3.5660 1.2107 -0.0005 5 7 4.2621 0.0396 -0.0016 6 7 5.6352 -0.2344 -0.0018 7 6 5.8244 -1.5280 0.0037 8 6 4.5728 -2.1675 -0.0027 9 6 4.3305 -3.6130 -0.0034 10 8 3.1903 -4.0390 -0.0035 11 7 5.3703 -4.4705 0.0017 12 6 5.1282 -5.9154 0.0071 13 1 4.2369 -6.1322 0.5960 14 6 6.3322 -6.6320 0.6217 15 7 6.6026 -6.0801 1.9515 16 6 7.6417 -6.5689 2.6974 17 1 8.2617 -7.3616 2.3055 18 6 7.8975 -6.0463 3.9577 19 7 7.1417 -5.0806 4.4355 20 14 9.3147 -6.7136 4.9755 21 1 10.0051 -7.7882 4.2181 22 1 10.2739 -5.6180 5.2667 23 1 8.7913 -7.2653 6.2510 24 6 4.9222 -6.4034 -1.4282 25 6 6.1732 -6.0991 -2.2548 26 6 4.6699 -7.9124 -1.4227 27 6 3.7182 -5.6867 -2.0428 28 6 3.5960 -1.1527 -0.0016 29 6 2.1953 -1.1782 -0.0005 30 1 -0.3633 -0.0003 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6764 2.1467 0.0007 34 1 4.0998 2.1495 -0.0001 35 1 6.7841 -2.0235 0.0090 36 1 6.2790 -4.1311 0.0019 37 1 6.1164 -7.6970 0.7073 38 1 7.2047 -6.4883 -0.0157 39 1 6.0459 -5.3679 2.3033 40 1 7.3206 -4.7151 5.3160 41 1 7.0311 -6.6096 -1.8170 42 1 6.0264 -6.4463 -3.2774 43 1 6.3534 -5.0241 -2.2588 44 1 3.7788 -8.1296 -0.8336 45 1 4.5228 -8.2600 -2.4452 46 1 5.5280 -8.4226 -0.9850 47 1 3.8983 -4.6118 -2.0468 48 1 3.5712 -6.0347 -3.0652 49 1 2.8269 -5.9036 -1.4538 50 1 1.6663 -2.1197 -0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734560791.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:28 Heat of formation + Delta-G solvation = 46.711385 kcal Electronic energy + Delta-G solvation = -30946.294606 eV Core-core repulsion = 26974.503525 eV Total energy + Delta-G solvation = -3971.791082 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.19962 -41.04279 -38.76869 -38.31741 -36.16717 -34.70531 -34.34596 -32.93854 -32.38341 -30.55216 -29.27306 -28.27983 -28.11632 -27.55991 -25.72193 -24.72749 -23.76515 -23.08289 -22.69881 -21.12349 -19.81208 -19.25289 -18.74388 -17.73860 -17.34801 -17.01021 -16.97140 -16.68732 -16.27627 -16.02472 -15.68115 -15.44736 -15.20580 -14.85142 -14.80837 -14.51081 -14.39631 -14.31351 -14.14596 -13.60624 -13.50023 -13.04121 -13.01475 -12.94662 -12.91264 -12.75241 -12.70369 -12.51702 -12.45769 -12.32279 -12.11734 -11.98434 -11.93573 -11.72087 -11.59587 -11.36622 -11.24463 -10.95358 -10.72079 -10.34371 -9.80982 -8.96475 -8.68984 -7.91679 -5.20913 -0.38534 -0.01982 1.09192 1.14788 1.48240 1.48886 1.58920 2.16111 2.39035 2.57555 2.63892 3.17837 3.42694 3.47002 3.67429 3.70614 3.83999 3.87657 4.05843 4.08279 4.10277 4.27243 4.35918 4.39456 4.45022 4.50515 4.57968 4.69686 4.78290 4.83312 4.86114 4.87362 4.91490 4.95968 5.00226 5.10202 5.12019 5.12771 5.20624 5.27404 5.28596 5.34419 5.35702 5.47343 5.50615 5.53680 5.60517 5.75011 5.77674 6.28505 6.34867 6.74888 7.35745 7.44687 8.10734 8.34385 9.31516 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009471 B = 0.003520 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.700080 B = 7952.579084 C = 9784.974602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.023 4.023 3 C -0.143 4.143 4 C 0.099 3.901 5 N -0.275 5.275 6 N -0.344 5.344 7 C 0.123 3.877 8 C -0.346 4.346 9 C 0.599 3.401 10 O -0.582 6.582 11 N -0.702 5.702 12 C 0.163 3.837 13 H 0.054 0.946 14 C 0.145 3.855 15 N -0.743 5.743 16 C -0.238 4.238 17 H 0.080 0.920 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.971 3.029 21 H -0.263 1.263 22 H -0.295 1.295 23 H -0.298 1.298 24 C -0.070 4.070 25 C -0.136 4.136 26 C -0.138 4.138 27 C -0.118 4.118 28 C 0.153 3.847 29 C -0.147 4.147 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.207 0.793 34 H 0.204 0.796 35 H 0.211 0.789 36 H 0.402 0.598 37 H 0.038 0.962 38 H 0.044 0.956 39 H 0.373 0.627 40 H 0.248 0.752 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.049 0.951 44 H 0.047 0.953 45 H 0.074 0.926 46 H 0.061 0.939 47 H 0.037 0.963 48 H 0.060 0.940 49 H 0.041 0.959 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.738 12.191 -16.195 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.029 4.029 3 C -0.163 4.163 4 C -0.027 4.027 5 N -0.039 5.039 6 N -0.165 5.165 7 C -0.057 4.057 8 C -0.361 4.361 9 C 0.390 3.610 10 O -0.465 6.465 11 N -0.351 5.351 12 C 0.057 3.943 13 H 0.072 0.928 14 C 0.018 3.982 15 N -0.385 5.385 16 C -0.370 4.370 17 H 0.098 0.902 18 C -0.267 4.267 19 N -0.620 5.620 20 Si 0.801 3.199 21 H -0.187 1.187 22 H -0.222 1.222 23 H -0.226 1.226 24 C -0.072 4.072 25 C -0.194 4.194 26 C -0.196 4.196 27 C -0.175 4.175 28 C 0.032 3.968 29 C -0.167 4.167 30 H 0.109 0.891 31 H 0.123 0.877 32 H 0.091 0.909 33 H 0.224 0.776 34 H 0.221 0.779 35 H 0.228 0.772 36 H 0.237 0.763 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.204 0.796 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.080 0.920 47 H 0.056 0.944 48 H 0.079 0.921 49 H 0.060 0.940 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.630 12.857 -16.187 23.719 hybrid contribution 0.830 -0.882 1.320 1.791 sum -10.801 11.975 -14.867 21.933 Atomic orbital electron populations 1.20971 0.86984 1.05013 1.04235 1.20550 0.99101 0.91517 0.91743 1.21425 0.91127 1.00763 1.03013 1.22433 0.93126 0.88333 0.98793 1.46315 1.06028 1.06061 1.45472 1.77467 0.89053 1.17044 1.32917 1.24324 0.99213 0.90460 0.91660 1.19782 0.92430 0.93369 1.30516 1.16922 0.84561 0.84661 0.74890 1.90691 1.22744 1.79487 1.53571 1.45560 1.08932 1.05993 1.74649 1.21051 0.97631 0.79405 0.96163 0.92796 1.21231 0.95050 0.96009 0.85881 1.42564 1.36155 1.44180 1.15639 1.19665 1.05895 1.14299 0.97117 0.90230 1.25532 1.02193 0.99776 0.99179 1.69857 1.42648 1.30914 1.18589 0.85101 0.78896 0.77507 0.78418 1.18746 1.22209 1.22584 1.20851 0.96660 0.96390 0.93268 1.21865 0.96365 1.01421 0.99708 1.21875 1.01678 0.93427 1.02607 1.21742 0.96786 0.99284 0.99682 1.19519 0.93793 0.86058 0.97455 1.20746 0.89383 1.01136 1.05390 0.89111 0.87720 0.90924 0.77602 0.77946 0.77234 0.76256 0.94433 0.93805 0.79560 0.94327 0.92027 0.91269 0.93183 0.93396 0.90679 0.92036 0.94352 0.92072 0.94000 0.83974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 10.03 71.24 0.71 -0.41 16 2 C -0.02 -0.39 5.89 -19.82 -0.12 -0.51 16 3 C -0.14 -1.71 9.67 22.03 0.21 -1.50 16 4 C 0.10 1.70 11.17 83.30 0.93 2.63 16 5 N -0.27 -7.64 3.86 -187.28 -0.72 -8.36 16 6 N -0.34 -10.80 12.57 -56.61 -0.71 -11.51 16 7 C 0.12 3.94 11.44 85.42 0.98 4.91 16 8 C -0.35 -12.14 6.17 -19.90 -0.12 -12.26 16 9 C 0.60 22.64 6.14 86.41 0.53 23.18 16 10 O -0.58 -24.21 12.82 -4.42 -0.06 -24.26 16 11 N -0.70 -24.79 3.63 -446.58 -1.62 -26.41 16 12 C 0.16 5.78 1.69 44.99 0.08 5.85 16 13 H 0.05 2.27 7.58 -2.38 -0.02 2.25 16 14 C 0.14 5.68 5.10 86.38 0.44 6.12 16 15 N -0.74 -37.72 5.43 -343.45 -1.87 -39.58 16 16 C -0.24 -13.18 9.99 84.03 0.84 -12.34 16 17 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 18 C -0.07 -4.31 5.50 84.86 0.47 -3.85 16 19 N -0.97 -60.54 13.06 21.65 0.28 -60.25 16 20 Si 0.97 46.55 29.55 68.60 2.03 48.57 16 21 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 23 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 24 C -0.07 -1.97 0.62 -52.19 -0.03 -2.01 16 25 C -0.14 -3.34 7.97 71.98 0.57 -2.76 16 26 C -0.14 -3.47 8.12 71.98 0.58 -2.88 16 27 C -0.12 -3.45 7.00 71.98 0.50 -2.94 16 28 C 0.15 4.84 6.76 39.49 0.27 5.11 16 29 C -0.15 -3.91 9.38 22.30 0.21 -3.70 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 0.41 8.10 -2.39 -0.02 0.39 16 32 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 33 H 0.21 0.40 8.06 -2.91 -0.02 0.37 16 34 H 0.20 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.21 5.67 7.46 -2.91 -0.02 5.65 16 36 H 0.40 13.56 7.52 -92.71 -0.70 12.86 16 37 H 0.04 1.48 6.71 -2.39 -0.02 1.46 16 38 H 0.04 1.62 6.17 -2.39 -0.01 1.61 16 39 H 0.37 20.86 7.33 -92.71 -0.68 20.18 16 40 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.06 1.51 6.32 -2.39 -0.02 1.50 16 42 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.05 1.26 7.60 -2.39 -0.02 1.24 16 44 H 0.05 1.26 8.14 -2.38 -0.02 1.25 16 45 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.06 1.55 6.54 -2.39 -0.02 1.53 16 47 H 0.04 1.24 5.78 -2.39 -0.01 1.23 16 48 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.04 1.37 7.53 -2.38 -0.02 1.36 16 50 H 0.14 4.20 7.12 -2.91 -0.02 4.18 16 Total: -1.00 -77.90 397.69 3.98 -73.92 By element: Atomic # 1 Polarization: 45.66 SS G_CDS: -0.40 Total: 45.26 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 7.05 Total: 2.64 kcal Atomic # 7 Polarization: -141.49 SS G_CDS: -4.64 Total: -146.12 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.06 Total: -24.26 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Total: -77.90 3.98 -73.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734560791.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.628 kcal (2) G-P(sol) polarization free energy of solvation -77.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds