Wall clock time and date at job start Wed Apr 1 2020 03:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.45745 * 2 1 4 4 N 1.46498 * 109.46903 * 60.03118 * 3 2 1 5 5 C 1.34776 * 119.99694 * 180.02562 * 4 3 2 6 6 O 1.21555 * 120.00402 * 359.97438 * 5 4 3 7 7 C 1.47838 * 119.99926 * 179.97438 * 5 4 3 8 8 C 1.39963 * 120.93736 * 5.03421 * 7 5 4 9 9 N 1.32134 * 118.92391 * 179.97438 * 8 7 5 10 10 C 1.31892 * 120.96334 * 359.97438 * 9 8 7 11 11 N 1.31852 * 122.09397 * 359.97438 * 10 9 8 12 12 C 1.32153 * 120.96910 * 0.02562 * 11 10 9 13 13 C 1.50709 * 120.53632 * 180.02562 * 12 11 10 14 14 C 1.52998 * 117.49735 * 358.66306 * 13 12 11 15 15 C 1.53000 * 60.00095 * 252.50955 * 14 13 12 16 16 C 1.53041 * 109.44930 * 119.96740 * 2 1 3 17 17 C 1.53194 * 109.31236 * 58.65103 * 16 2 1 18 18 N 1.46921 * 108.77467 * 54.63284 * 17 16 2 19 19 C 1.36935 * 120.62713 * 126.41567 * 18 17 16 20 20 H 1.08002 * 119.99965 * 212.18047 * 19 18 17 21 21 C 1.38816 * 120.00558 * 32.17707 * 19 18 17 22 22 N 1.31618 * 119.99364 * 14.75175 * 21 19 18 23 23 Si 1.86790 * 120.00407 * 194.75704 * 21 19 18 24 24 H 1.48503 * 109.47119 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47280 * 119.99749 * 23 21 19 26 26 H 1.48506 * 109.46998 * 239.99760 * 23 21 19 27 27 C 1.46927 * 118.74145 * 306.38817 * 18 17 16 28 28 C 1.53044 * 109.45894 * 240.03103 * 2 1 3 29 29 H 1.08994 * 109.47451 * 59.99945 * 1 2 3 30 30 H 1.09003 * 109.46938 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47205 * 299.99572 * 1 2 3 32 32 H 1.09001 * 109.47062 * 300.02803 * 3 2 1 33 33 H 1.09001 * 109.47127 * 180.02562 * 3 2 1 34 34 H 0.97001 * 120.00058 * 359.97438 * 4 3 2 35 35 H 1.07996 * 120.54197 * 0.25194 * 8 7 5 36 36 H 1.08001 * 118.95058 * 180.02562 * 10 9 8 37 37 H 1.08994 * 115.54742 * 144.36850 * 13 12 11 38 38 H 1.09005 * 117.50094 * 359.97438 * 14 13 12 39 39 H 1.09000 * 117.49892 * 145.01931 * 14 13 12 40 40 H 1.09005 * 117.49783 * 252.51666 * 15 14 13 41 41 H 1.09004 * 117.51988 * 107.48198 * 15 14 13 42 42 H 1.08998 * 109.49398 * 178.60074 * 16 2 1 43 43 H 1.08998 * 109.49713 * 298.69674 * 16 2 1 44 44 H 1.09001 * 109.58576 * 294.84471 * 17 16 2 45 45 H 1.08999 * 109.58493 * 174.42118 * 17 16 2 46 46 H 0.97001 * 119.99917 * 180.02562 * 22 21 19 47 47 H 1.08994 * 109.58721 * 293.82519 * 27 18 17 48 48 H 1.08995 * 109.70217 * 173.46750 * 27 18 17 49 49 H 1.08997 * 109.50030 * 61.30873 * 28 2 1 50 50 H 1.08998 * 109.49721 * 181.40510 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4427 0.0000 4 7 1.5518 2.1329 1.1965 5 6 1.8768 3.4234 1.4096 6 8 2.5750 4.0145 0.6093 7 6 1.3839 4.1201 2.6168 8 6 0.6670 3.4321 3.6025 9 7 0.2457 4.0940 4.6656 10 6 0.4924 5.3822 4.8047 11 7 1.1646 6.0682 3.9013 12 6 1.6229 5.4856 2.8073 13 6 2.3905 6.2791 1.7813 14 6 2.5846 7.7737 2.0448 15 6 1.6134 7.3082 0.9580 16 6 2.0396 -0.7208 1.2501 17 6 1.4991 -2.1542 1.2642 18 7 1.8621 -2.8089 0.0000 19 6 2.5254 -4.0068 0.0002 20 1 3.2230 -4.2379 -0.7913 21 6 2.3013 -4.9243 1.0175 22 7 1.2608 -4.7853 1.8115 23 14 3.4764 -6.3560 1.2597 24 1 4.5570 -6.2868 0.2435 25 1 4.0695 -6.2850 2.6192 26 1 2.7365 -7.6347 1.1085 27 6 1.4993 -2.1542 -1.2643 28 6 2.0399 -0.7208 -1.2501 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6758 1.9565 -0.8897 33 1 3.1297 1.4429 -0.0005 34 1 0.9942 1.6613 1.8350 35 1 0.4653 2.3762 3.4980 36 1 0.1331 5.8910 5.6869 37 1 3.2011 5.7458 1.2849 38 1 2.1567 8.1832 2.9599 39 1 3.5232 8.2239 1.7217 40 1 1.9131 7.4522 -0.0801 41 1 0.5468 7.4111 1.1581 42 1 3.1293 -0.7430 1.2384 43 1 1.6955 -0.1934 2.1398 44 1 0.4141 -2.1345 1.3673 45 1 1.9375 -2.7018 2.0985 46 1 1.1044 -5.4262 2.5226 47 1 0.4144 -2.1345 -1.3674 48 1 1.9360 -2.7011 -2.0998 49 1 1.6960 -0.1935 -2.1399 50 1 3.1295 -0.7431 -1.2382 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754721709.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:45 Heat of formation + Delta-G solvation = 57.851163 kcal Electronic energy + Delta-G solvation = -30478.256811 eV Core-core repulsion = 26506.948786 eV Total energy + Delta-G solvation = -3971.308025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.68547 -39.80523 -38.48971 -37.47250 -35.17054 -33.87137 -33.27415 -32.38789 -30.86515 -30.00872 -27.29045 -27.05205 -25.61629 -25.33561 -23.87023 -22.58079 -22.40802 -21.61254 -21.12129 -20.62785 -18.29848 -18.13586 -17.87857 -17.26161 -16.42509 -15.86694 -15.72928 -15.46103 -14.94687 -14.85250 -14.63178 -14.35554 -14.10791 -14.02946 -13.74076 -13.51193 -13.45267 -12.87718 -12.67353 -12.35501 -12.08464 -11.97330 -11.79483 -11.62513 -11.51503 -11.35469 -11.23248 -10.87605 -10.81402 -10.74618 -10.60446 -10.56895 -10.25965 -10.20670 -9.87463 -9.83250 -9.76465 -9.64775 -9.56318 -9.45315 -9.09040 -8.49766 -6.62760 -5.82818 -3.28945 0.09522 0.61975 2.63089 2.94609 3.32283 3.34006 3.42472 3.44374 3.54996 3.68898 3.71040 3.98622 4.37582 4.46414 4.52986 4.72563 4.77817 4.79581 4.97344 5.01407 5.09246 5.15820 5.37869 5.39480 5.44061 5.47011 5.61439 5.69255 5.77201 5.85446 5.87787 5.90679 5.99906 6.01717 6.06412 6.08250 6.25737 6.33178 6.42556 6.47162 6.53147 6.54915 6.63552 6.73132 6.82607 6.96491 7.28226 7.32970 7.59642 7.63447 7.78024 7.99985 8.44630 9.19158 9.81137 10.40143 11.25583 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018386 B = 0.002399 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.543247 B =11667.466550 C =12430.898038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.065 4.065 3 C 0.130 3.870 4 N -0.713 5.713 5 C 0.567 3.433 6 O -0.528 6.528 7 C -0.237 4.237 8 C 0.186 3.814 9 N -0.525 5.525 10 C 0.317 3.683 11 N -0.524 5.524 12 C 0.265 3.735 13 C -0.125 4.125 14 C -0.163 4.163 15 C -0.150 4.150 16 C -0.130 4.130 17 C 0.174 3.826 18 N -0.590 5.590 19 C -0.254 4.254 20 H 0.063 0.937 21 C 0.006 3.994 22 N -0.902 5.902 23 Si 0.900 3.100 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.146 3.854 28 C -0.119 4.119 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.400 0.600 35 H 0.173 0.827 36 H 0.202 0.798 37 H 0.154 0.846 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.043 0.957 44 H 0.023 0.977 45 H 0.079 0.921 46 H 0.253 0.747 47 H 0.021 0.979 48 H 0.053 0.947 49 H 0.052 0.948 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.975 21.825 1.720 21.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.065 4.065 3 C 0.007 3.993 4 N -0.365 5.365 5 C 0.352 3.648 6 O -0.406 6.406 7 C -0.245 4.245 8 C 0.019 3.981 9 N -0.238 5.238 10 C 0.030 3.970 11 N -0.237 5.237 12 C 0.118 3.882 13 C -0.144 4.144 14 C -0.200 4.200 15 C -0.188 4.188 16 C -0.170 4.170 17 C 0.048 3.952 18 N -0.313 5.313 19 C -0.384 4.384 20 H 0.081 0.919 21 C -0.193 4.193 22 N -0.545 5.545 23 Si 0.730 3.270 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.217 1.217 27 C 0.019 3.981 28 C -0.159 4.159 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.236 0.764 35 H 0.190 0.810 36 H 0.218 0.782 37 H 0.171 0.829 38 H 0.125 0.875 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.109 0.891 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.041 0.959 45 H 0.097 0.903 46 H 0.063 0.937 47 H 0.038 0.962 48 H 0.071 0.929 49 H 0.071 0.929 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.862 22.559 2.092 22.732 hybrid contribution 0.465 -1.580 0.002 1.647 sum -1.397 20.979 2.093 21.130 Atomic orbital electron populations 1.21951 0.94647 1.03180 1.00213 1.20716 0.95809 0.91906 0.98088 1.21619 0.99209 0.92297 0.86128 1.46024 1.53044 1.11187 1.26239 1.17699 0.80518 0.81830 0.84763 1.90701 1.37935 1.65678 1.46240 1.21608 1.06450 0.96859 0.99551 1.23536 0.87264 1.00396 0.86871 1.68467 1.21876 1.10344 1.23149 1.25235 0.88436 0.87056 0.96281 1.68267 1.12265 1.40388 1.02805 1.21003 0.87490 0.89239 0.90437 1.21450 1.03078 0.91025 0.98807 1.23017 1.01164 0.94967 1.00824 1.22888 0.97849 1.00876 0.97177 1.22265 1.00756 0.99649 0.94291 1.20726 0.96547 0.87680 0.90225 1.43971 1.66859 1.21137 0.99322 1.19181 1.16638 0.92362 1.10183 0.91924 1.25142 0.96624 0.97342 1.00225 1.70016 1.26400 1.37287 1.20844 0.86256 0.80646 0.82330 0.77735 1.20221 1.21575 1.21684 1.20920 0.96402 0.90518 0.90236 1.21995 1.00778 0.98238 0.94903 0.93302 0.90548 0.93852 0.91517 0.91309 0.76370 0.81026 0.78159 0.82870 0.87534 0.88316 0.87869 0.89080 0.92425 0.93870 0.95938 0.90260 0.93699 0.96157 0.92872 0.92892 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 7.54 37.16 0.28 -1.67 16 2 C -0.06 -0.93 0.53 -154.46 -0.08 -1.01 16 3 C 0.13 1.68 4.56 -4.04 -0.02 1.66 16 4 N -0.71 -8.24 4.90 -61.25 -0.30 -8.54 16 5 C 0.57 7.11 7.76 -12.33 -0.10 7.02 16 6 O -0.53 -7.79 13.49 5.32 0.07 -7.72 16 7 C -0.24 -2.69 5.91 -104.69 -0.62 -3.30 16 8 C 0.19 1.87 10.80 -16.78 -0.18 1.69 16 9 N -0.52 -5.45 10.42 -14.24 -0.15 -5.60 16 10 C 0.32 2.93 12.27 -92.02 -1.13 1.80 16 11 N -0.52 -5.55 9.44 -10.48 -0.10 -5.65 16 12 C 0.26 3.04 6.53 -81.82 -0.53 2.50 16 13 C -0.13 -1.35 4.88 -91.77 -0.45 -1.80 16 14 C -0.16 -1.42 10.04 -26.73 -0.27 -1.68 16 15 C -0.15 -1.37 10.23 -26.73 -0.27 -1.65 16 16 C -0.13 -2.19 4.75 -26.61 -0.13 -2.31 16 17 C 0.17 3.80 4.80 -3.71 -0.02 3.79 16 18 N -0.59 -13.92 2.97 -172.32 -0.51 -14.43 16 19 C -0.25 -6.74 9.55 -15.06 -0.14 -6.89 16 20 H 0.06 1.66 7.87 -52.49 -0.41 1.24 16 21 C 0.01 0.15 4.94 -17.43 -0.09 0.07 16 22 N -0.90 -25.39 11.37 55.49 0.63 -24.76 16 23 Si 0.90 21.28 29.58 -169.99 -5.03 16.25 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 C 0.15 2.85 6.04 -3.71 -0.02 2.83 16 28 C -0.12 -1.88 4.91 -26.61 -0.13 -2.01 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.25 4.98 -51.93 -0.26 0.99 16 31 H 0.04 0.51 6.86 -51.93 -0.36 0.16 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.40 4.04 4.32 -40.82 -0.18 3.86 16 35 H 0.17 1.33 6.57 -52.49 -0.34 0.99 16 36 H 0.20 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.15 1.87 5.93 -51.93 -0.31 1.57 16 38 H 0.11 0.94 7.58 -51.93 -0.39 0.55 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.04 0.62 6.82 -51.93 -0.35 0.27 16 44 H 0.02 0.51 6.69 -51.93 -0.35 0.17 16 45 H 0.08 2.00 6.31 -51.93 -0.33 1.67 16 46 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 47 H 0.02 0.40 6.69 -51.93 -0.35 0.06 16 48 H 0.05 1.04 7.94 -51.93 -0.41 0.63 16 49 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 387.76 15.07 5.84 5.84 Total: -1.00 -30.55 387.76 -10.84 -41.39 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.40 Total: 4.20 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -3.90 Total: -0.97 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.43 Total: -58.99 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.07 Total: -7.72 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.55 -10.84 -41.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754721709.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.243 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds