Wall clock time and date at job start Wed Apr 1 2020 03:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.45745 * 2 1 4 4 N 1.46498 * 109.46903 * 60.03118 * 3 2 1 5 5 C 1.34776 * 119.99694 * 180.02562 * 4 3 2 6 6 O 1.21555 * 120.00402 * 359.97438 * 5 4 3 7 7 C 1.47838 * 119.99926 * 179.97438 * 5 4 3 8 8 C 1.39963 * 120.93736 * 5.03421 * 7 5 4 9 9 N 1.32134 * 118.92391 * 179.97438 * 8 7 5 10 10 C 1.31892 * 120.96334 * 359.97438 * 9 8 7 11 11 N 1.31852 * 122.09397 * 359.97438 * 10 9 8 12 12 C 1.32153 * 120.96910 * 0.02562 * 11 10 9 13 13 C 1.50709 * 120.53632 * 180.02562 * 12 11 10 14 14 C 1.52998 * 117.49735 * 358.66306 * 13 12 11 15 15 C 1.53000 * 60.00095 * 252.50955 * 14 13 12 16 16 C 1.53041 * 109.44930 * 119.96740 * 2 1 3 17 17 C 1.53194 * 109.31236 * 58.65103 * 16 2 1 18 18 N 1.46921 * 108.77467 * 54.63284 * 17 16 2 19 19 C 1.36935 * 120.62713 * 126.41567 * 18 17 16 20 20 H 1.08002 * 119.99965 * 212.18047 * 19 18 17 21 21 C 1.38816 * 120.00558 * 32.17707 * 19 18 17 22 22 N 1.31618 * 119.99364 * 14.75175 * 21 19 18 23 23 Si 1.86790 * 120.00407 * 194.75704 * 21 19 18 24 24 H 1.48503 * 109.47119 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47280 * 119.99749 * 23 21 19 26 26 H 1.48506 * 109.46998 * 239.99760 * 23 21 19 27 27 C 1.46927 * 118.74145 * 306.38817 * 18 17 16 28 28 C 1.53044 * 109.45894 * 240.03103 * 2 1 3 29 29 H 1.08994 * 109.47451 * 59.99945 * 1 2 3 30 30 H 1.09003 * 109.46938 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47205 * 299.99572 * 1 2 3 32 32 H 1.09001 * 109.47062 * 300.02803 * 3 2 1 33 33 H 1.09001 * 109.47127 * 180.02562 * 3 2 1 34 34 H 0.97001 * 120.00058 * 359.97438 * 4 3 2 35 35 H 1.07996 * 120.54197 * 0.25194 * 8 7 5 36 36 H 1.08001 * 118.95058 * 180.02562 * 10 9 8 37 37 H 1.08994 * 115.54742 * 144.36850 * 13 12 11 38 38 H 1.09005 * 117.50094 * 359.97438 * 14 13 12 39 39 H 1.09000 * 117.49892 * 145.01931 * 14 13 12 40 40 H 1.09005 * 117.49783 * 252.51666 * 15 14 13 41 41 H 1.09004 * 117.51988 * 107.48198 * 15 14 13 42 42 H 1.08998 * 109.49398 * 178.60074 * 16 2 1 43 43 H 1.08998 * 109.49713 * 298.69674 * 16 2 1 44 44 H 1.09001 * 109.58576 * 294.84471 * 17 16 2 45 45 H 1.08999 * 109.58493 * 174.42118 * 17 16 2 46 46 H 0.97001 * 119.99917 * 180.02562 * 22 21 19 47 47 H 1.08994 * 109.58721 * 293.82519 * 27 18 17 48 48 H 1.08995 * 109.70217 * 173.46750 * 27 18 17 49 49 H 1.08997 * 109.50030 * 61.30873 * 28 2 1 50 50 H 1.08998 * 109.49721 * 181.40510 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4427 0.0000 4 7 1.5518 2.1329 1.1965 5 6 1.8768 3.4234 1.4096 6 8 2.5750 4.0145 0.6093 7 6 1.3839 4.1201 2.6168 8 6 0.6670 3.4321 3.6025 9 7 0.2457 4.0940 4.6656 10 6 0.4924 5.3822 4.8047 11 7 1.1646 6.0682 3.9013 12 6 1.6229 5.4856 2.8073 13 6 2.3905 6.2791 1.7813 14 6 2.5846 7.7737 2.0448 15 6 1.6134 7.3082 0.9580 16 6 2.0396 -0.7208 1.2501 17 6 1.4991 -2.1542 1.2642 18 7 1.8621 -2.8089 0.0000 19 6 2.5254 -4.0068 0.0002 20 1 3.2230 -4.2379 -0.7913 21 6 2.3013 -4.9243 1.0175 22 7 1.2608 -4.7853 1.8115 23 14 3.4764 -6.3560 1.2597 24 1 4.5570 -6.2868 0.2435 25 1 4.0695 -6.2850 2.6192 26 1 2.7365 -7.6347 1.1085 27 6 1.4993 -2.1542 -1.2643 28 6 2.0399 -0.7208 -1.2501 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6758 1.9565 -0.8897 33 1 3.1297 1.4429 -0.0005 34 1 0.9942 1.6613 1.8350 35 1 0.4653 2.3762 3.4980 36 1 0.1331 5.8910 5.6869 37 1 3.2011 5.7458 1.2849 38 1 2.1567 8.1832 2.9599 39 1 3.5232 8.2239 1.7217 40 1 1.9131 7.4522 -0.0801 41 1 0.5468 7.4111 1.1581 42 1 3.1293 -0.7430 1.2384 43 1 1.6955 -0.1934 2.1398 44 1 0.4141 -2.1345 1.3673 45 1 1.9375 -2.7018 2.0985 46 1 1.1044 -5.4262 2.5226 47 1 0.4144 -2.1345 -1.3674 48 1 1.9360 -2.7011 -2.0998 49 1 1.6960 -0.1935 -2.1399 50 1 3.1295 -0.7431 -1.2382 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754721709.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:44 Heat of formation + Delta-G solvation = 41.188216 kcal Electronic energy + Delta-G solvation = -30478.979370 eV Core-core repulsion = 26506.948786 eV Total energy + Delta-G solvation = -3972.030584 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.47931 -40.89121 -39.72466 -38.23202 -36.58351 -34.92535 -34.37961 -33.39729 -32.46974 -31.57734 -28.76444 -28.13071 -26.50703 -26.36435 -25.35992 -23.91110 -23.25533 -22.56571 -22.40264 -21.71661 -19.67917 -19.04586 -18.89470 -18.16989 -17.95199 -16.82020 -16.75008 -16.68775 -16.26335 -15.94122 -15.70428 -15.45794 -15.39826 -15.07215 -15.01193 -14.86638 -14.61453 -14.42677 -14.00671 -13.44807 -13.18055 -13.07234 -12.95001 -12.78707 -12.66034 -12.59579 -12.50279 -12.35831 -12.31294 -12.24666 -11.87348 -11.79267 -11.61357 -11.43424 -11.34448 -11.10098 -11.02578 -10.69297 -10.59273 -10.50983 -10.41188 -10.07039 -8.55697 -7.85826 -5.34150 -0.68837 -0.15844 1.44477 1.47303 1.56763 1.73385 2.00078 2.51262 2.55524 2.80676 2.95848 3.01888 3.25258 3.28792 3.55529 3.70747 3.74535 3.82560 3.88285 3.96118 3.99760 4.05264 4.11811 4.31389 4.43222 4.54968 4.63956 4.65159 4.74181 4.75077 4.80344 4.85829 4.87782 4.94358 4.97544 5.09937 5.11206 5.16251 5.20154 5.26698 5.30867 5.34211 5.41305 5.43776 5.52170 5.56666 5.69087 5.76215 5.86479 6.38828 6.44200 6.88337 7.06576 7.19697 7.91010 8.43074 9.19420 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018386 B = 0.002399 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.543247 B =11667.466550 C =12430.898038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.055 4.055 3 C 0.143 3.857 4 N -0.707 5.707 5 C 0.570 3.430 6 O -0.552 6.552 7 C -0.251 4.251 8 C 0.191 3.809 9 N -0.538 5.538 10 C 0.318 3.682 11 N -0.532 5.532 12 C 0.256 3.744 13 C -0.144 4.144 14 C -0.149 4.149 15 C -0.145 4.145 16 C -0.118 4.118 17 C 0.182 3.818 18 N -0.609 5.609 19 C -0.262 4.262 20 H 0.059 0.941 21 C -0.046 4.046 22 N -0.931 5.931 23 Si 0.960 3.040 24 H -0.269 1.269 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.142 3.858 28 C -0.111 4.111 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.408 0.592 35 H 0.193 0.807 36 H 0.235 0.765 37 H 0.137 0.863 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.044 0.956 43 H 0.069 0.931 44 H 0.009 0.991 45 H 0.039 0.961 46 H 0.249 0.751 47 H 0.021 0.979 48 H 0.046 0.954 49 H 0.083 0.917 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.171 23.773 1.750 23.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.055 4.055 3 C 0.020 3.980 4 N -0.359 5.359 5 C 0.356 3.644 6 O -0.432 6.432 7 C -0.259 4.259 8 C 0.024 3.976 9 N -0.251 5.251 10 C 0.033 3.967 11 N -0.246 5.246 12 C 0.110 3.890 13 C -0.163 4.163 14 C -0.186 4.186 15 C -0.183 4.183 16 C -0.157 4.157 17 C 0.056 3.944 18 N -0.333 5.333 19 C -0.392 4.392 20 H 0.077 0.923 21 C -0.242 4.242 22 N -0.576 5.576 23 Si 0.789 3.211 24 H -0.193 1.193 25 H -0.217 1.217 26 H -0.219 1.219 27 C 0.017 3.983 28 C -0.150 4.150 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.246 0.754 35 H 0.209 0.791 36 H 0.251 0.749 37 H 0.155 0.845 38 H 0.124 0.876 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.109 0.891 42 H 0.063 0.937 43 H 0.088 0.912 44 H 0.027 0.973 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.039 0.961 48 H 0.065 0.935 49 H 0.101 0.899 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.062 24.525 2.112 24.702 hybrid contribution 0.493 -2.157 -0.016 2.213 sum -1.569 22.368 2.096 22.521 Atomic orbital electron populations 1.21886 0.93638 1.01794 1.02193 1.20578 0.96434 0.92485 0.96020 1.21371 0.98665 0.90948 0.87053 1.45898 1.52981 1.10979 1.26017 1.17832 0.79975 0.81784 0.84813 1.90698 1.39054 1.66245 1.47202 1.21516 1.07753 0.96997 0.99622 1.23861 0.86255 1.01238 0.86284 1.68560 1.22392 1.10919 1.23277 1.25955 0.87182 0.86903 0.96703 1.68336 1.12842 1.40562 1.02846 1.21182 0.87502 0.89545 0.90819 1.21385 1.03355 0.91887 0.99638 1.23066 1.01609 0.93309 1.00601 1.22936 0.97849 0.99834 0.97673 1.22065 0.99747 0.96855 0.96999 1.20534 0.95492 0.89972 0.88381 1.44240 1.66965 1.20896 1.01181 1.19456 1.16477 0.93446 1.09847 0.92321 1.25815 0.98099 0.99799 1.00448 1.70149 1.27941 1.38141 1.21409 0.85314 0.78937 0.79376 0.77467 1.19342 1.21748 1.21919 1.21053 0.96523 0.92491 0.88276 1.21872 1.00210 0.95967 0.96980 0.91486 0.93501 0.91840 0.90592 0.92142 0.75423 0.79062 0.74881 0.84541 0.87557 0.86923 0.87106 0.89139 0.93686 0.91222 0.97304 0.94222 0.94185 0.96098 0.93529 0.89868 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 7.54 71.98 0.54 -2.91 16 2 C -0.05 -1.47 0.53 -52.15 -0.03 -1.49 16 3 C 0.14 3.34 4.56 86.38 0.39 3.73 16 4 N -0.71 -14.70 4.90 -465.97 -2.29 -16.99 16 5 C 0.57 13.42 7.76 86.78 0.67 14.09 16 6 O -0.55 -15.76 13.49 -3.89 -0.05 -15.82 16 7 C -0.25 -5.33 5.91 -19.91 -0.12 -5.44 16 8 C 0.19 3.45 10.80 85.07 0.92 4.37 16 9 N -0.54 -10.02 10.42 -198.97 -2.07 -12.10 16 10 C 0.32 5.19 12.27 180.84 2.22 7.41 16 11 N -0.53 -10.39 9.44 -187.06 -1.77 -12.16 16 12 C 0.26 5.57 6.53 42.92 0.28 5.85 16 13 C -0.14 -2.99 4.88 -11.54 -0.06 -3.05 16 14 C -0.15 -2.37 10.04 30.59 0.31 -2.07 16 15 C -0.14 -2.47 10.23 30.59 0.31 -2.15 16 16 C -0.12 -3.85 4.75 30.67 0.15 -3.70 16 17 C 0.18 8.09 4.80 86.36 0.41 8.51 16 18 N -0.61 -29.21 2.97 -699.11 -2.08 -31.29 16 19 C -0.26 -14.16 9.55 84.03 0.80 -13.36 16 20 H 0.06 3.15 7.87 -2.91 -0.02 3.13 16 21 C -0.05 -2.52 4.94 84.86 0.42 -2.10 16 22 N -0.93 -53.92 11.37 21.65 0.25 -53.67 16 23 Si 0.96 44.54 29.58 68.60 2.03 46.57 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 26 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 27 C 0.14 5.52 6.04 86.36 0.52 6.04 16 28 C -0.11 -3.31 4.91 30.67 0.15 -3.16 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.48 4.98 -2.39 -0.01 1.47 16 31 H 0.06 1.32 6.86 -2.39 -0.02 1.31 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.41 7.09 4.32 -92.71 -0.40 6.69 16 35 H 0.19 2.48 6.57 -2.91 -0.02 2.46 16 36 H 0.24 1.92 8.06 -2.91 -0.02 1.89 16 37 H 0.14 3.33 5.93 -2.39 -0.01 3.31 16 38 H 0.11 1.71 7.58 -2.38 -0.02 1.69 16 39 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.07 1.89 6.82 -2.39 -0.02 1.87 16 44 H 0.01 0.42 6.69 -2.39 -0.02 0.40 16 45 H 0.04 2.06 6.31 -2.39 -0.02 2.05 16 46 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 47 H 0.02 0.82 6.69 -2.39 -0.02 0.80 16 48 H 0.05 1.83 7.94 -2.39 -0.02 1.81 16 49 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -67.59 387.76 2.49 -65.10 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.57 Total: 19.80 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 7.90 Total: 10.55 kcal Atomic # 7 Polarization: -118.25 SS G_CDS: -7.96 Total: -126.20 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.05 Total: -15.82 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -67.59 2.49 -65.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754721709.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.287 kcal (2) G-P(sol) polarization free energy of solvation -67.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds