Wall clock time and date at job start Wed Apr 1 2020 03:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40395 * 120.22250 * 2 1 4 4 C 1.35026 * 120.44240 * 179.65286 * 3 2 1 5 5 N 1.36525 * 120.59694 * 0.59229 * 4 3 2 6 6 C 1.36252 * 132.78382 * 179.30046 * 5 4 3 7 7 N 1.30187 * 109.81954 * 179.97438 * 6 5 4 8 8 C 1.34884 * 109.73403 * 0.02562 * 7 6 5 9 9 C 1.46287 * 126.49739 * 179.97438 * 8 7 6 10 10 O 1.21772 * 120.00413 * 179.74686 * 9 8 7 11 11 N 1.34784 * 119.99888 * 0.02562 * 9 8 7 12 12 C 1.46499 * 119.99893 * 179.72968 * 11 9 8 13 13 H 1.09002 * 109.47048 * 324.99733 * 12 11 9 14 14 C 1.53004 * 109.46824 * 204.99873 * 12 11 9 15 15 N 1.46507 * 109.46980 * 55.00128 * 14 12 11 16 16 C 1.36938 * 119.99671 * 179.97438 * 15 14 12 17 17 H 1.07990 * 120.00485 * 0.02562 * 16 15 14 18 18 C 1.38817 * 119.99772 * 179.97438 * 16 15 14 19 19 N 1.31622 * 119.99709 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00078 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47239 * 60.00081 * 20 18 16 22 22 H 1.48504 * 109.47221 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47215 * 300.00358 * 20 18 16 24 24 C 1.52995 * 109.47258 * 85.00288 * 12 11 9 25 25 C 1.52997 * 109.47473 * 59.99614 * 24 12 11 26 26 C 1.53000 * 109.46898 * 179.97438 * 24 12 11 27 27 C 1.53004 * 109.46864 * 299.99561 * 24 12 11 28 28 C 1.37273 * 120.03297 * 359.56683 * 5 4 3 29 29 C 1.36332 * 120.22350 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.46921 * 269.97457 * 1 2 3 31 31 H 1.09005 * 109.47133 * 29.97339 * 1 2 3 32 32 H 1.08999 * 109.47234 * 149.97986 * 1 2 3 33 33 H 1.08008 * 119.77570 * 0.02562 * 3 2 1 34 34 H 1.08000 * 119.69818 * 179.91629 * 4 3 2 35 35 H 1.08000 * 125.09069 * 359.96038 * 6 5 4 36 36 H 0.97005 * 119.99846 * 359.72756 * 11 9 8 37 37 H 1.08996 * 109.47116 * 174.99417 * 14 12 11 38 38 H 1.08992 * 109.47265 * 295.00085 * 14 12 11 39 39 H 0.96995 * 119.99766 * 359.97438 * 15 14 12 40 40 H 0.97000 * 119.99566 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.47129 * 59.99899 * 25 24 12 42 42 H 1.09000 * 109.47117 * 179.97438 * 25 24 12 43 43 H 1.08998 * 109.46926 * 300.00256 * 25 24 12 44 44 H 1.08997 * 109.47105 * 60.00145 * 26 24 12 45 45 H 1.09008 * 109.46672 * 179.97438 * 26 24 12 46 46 H 1.08988 * 109.47526 * 299.99513 * 26 24 12 47 47 H 1.08998 * 109.47319 * 60.00518 * 27 24 12 48 48 H 1.09000 * 109.47012 * 180.02562 * 27 24 12 49 49 H 1.08997 * 109.47519 * 300.00087 * 27 24 12 50 50 H 1.08007 * 120.39315 * 359.95112 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2137 1.2131 0.0000 4 6 3.5639 1.2183 0.0071 5 7 4.2634 0.0459 0.0021 6 6 5.5963 -0.2366 -0.0052 7 7 5.7742 -1.5262 -0.0069 8 6 4.5788 -2.1509 -0.0014 9 6 4.3523 -3.5962 -0.0018 10 8 3.2162 -4.0345 0.0083 11 7 5.4011 -4.4427 -0.0076 12 6 5.1743 -5.8900 -0.0019 13 1 4.2909 -6.1170 0.5950 14 6 6.3916 -6.5946 0.6003 15 7 6.6685 -6.0415 1.9284 16 6 7.7192 -6.5209 2.6642 17 1 8.3439 -7.3064 2.2655 18 6 7.9819 -5.9965 3.9224 19 7 7.2208 -5.0388 4.4082 20 14 9.4155 -6.6499 4.9259 21 1 10.6806 -6.4383 4.1778 22 1 9.4806 -5.9300 6.2231 23 1 9.2245 -8.1014 5.1749 24 6 4.9602 -6.3783 -1.4360 25 6 6.2001 -6.0596 -2.2738 26 6 4.7239 -7.8899 -1.4301 27 6 3.7428 -5.6737 -2.0382 28 6 3.5948 -1.1530 -0.0011 29 6 2.1933 -1.1780 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8903 -0.5134 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6736 2.1485 0.0004 34 1 4.0954 2.1585 0.0056 35 1 6.3869 0.4992 -0.0092 36 1 6.3061 -4.0935 -0.0155 37 1 6.1879 -7.6618 0.6866 38 1 7.2565 -6.4407 -0.0449 39 1 6.1077 -5.3357 2.2863 40 1 7.4042 -4.6726 5.2875 41 1 7.0673 -6.5615 -1.8447 42 1 6.0476 -6.4079 -3.2953 43 1 6.3688 -4.9828 -2.2780 44 1 3.8407 -8.1173 -0.8332 45 1 4.5709 -8.2377 -2.4518 46 1 5.5913 -8.3916 -1.0013 47 1 3.9115 -4.5968 -2.0425 48 1 3.5900 -6.0218 -3.0597 49 1 2.8595 -5.9007 -1.4414 50 1 1.6633 -2.1191 -0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755827206.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:34 Heat of formation + Delta-G solvation = 31.086046 kcal Electronic energy + Delta-G solvation = -30958.221133 eV Core-core repulsion = 26985.752486 eV Total energy + Delta-G solvation = -3972.468647 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.83277 -41.11100 -38.88531 -38.43788 -36.18908 -35.04302 -34.45218 -32.95710 -32.20022 -30.63631 -29.38375 -28.22371 -28.14907 -27.45284 -25.75962 -24.73326 -23.97071 -23.08866 -22.72785 -21.19252 -19.83833 -19.40021 -18.87691 -17.62802 -17.42743 -17.17059 -17.07999 -16.76586 -16.33202 -16.07931 -15.61501 -15.35356 -15.25001 -15.14630 -14.84231 -14.66912 -14.57279 -14.33461 -14.18647 -13.65292 -13.41986 -13.08448 -13.02524 -12.95174 -12.92492 -12.72610 -12.68400 -12.52387 -12.47131 -12.36383 -12.21553 -12.02422 -11.74914 -11.64503 -11.54021 -11.40641 -11.28225 -10.99573 -10.84952 -10.35238 -9.84708 -8.98980 -8.49677 -7.92284 -5.22641 -0.36095 0.10618 1.32794 1.46193 1.50456 1.51314 1.56311 2.28002 2.36662 2.56827 2.65003 3.40316 3.42799 3.43971 3.66567 3.71381 3.79467 3.82159 3.86442 4.04624 4.14032 4.22943 4.29586 4.35146 4.46820 4.54873 4.64678 4.69030 4.79992 4.81753 4.84010 4.84811 4.89527 4.96043 5.00635 5.06251 5.08191 5.15253 5.16055 5.24445 5.29055 5.30539 5.40088 5.46656 5.49876 5.55826 5.57015 5.69973 6.15282 6.26935 6.51405 6.80350 7.33335 7.35047 8.07806 8.32237 9.30856 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009519 B = 0.003524 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2940.898787 B = 7943.960319 C = 9783.949089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.053 4.053 3 C -0.136 4.136 4 C 0.063 3.937 5 N -0.370 5.370 6 C 0.148 3.852 7 N -0.449 5.449 8 C -0.121 4.121 9 C 0.602 3.398 10 O -0.575 6.575 11 N -0.694 5.694 12 C 0.159 3.841 13 H 0.056 0.944 14 C 0.146 3.854 15 N -0.743 5.743 16 C -0.245 4.245 17 H 0.080 0.920 18 C -0.076 4.076 19 N -0.970 5.970 20 Si 0.977 3.023 21 H -0.275 1.275 22 H -0.298 1.298 23 H -0.277 1.277 24 C -0.070 4.070 25 C -0.135 4.135 26 C -0.137 4.137 27 C -0.117 4.117 28 C 0.080 3.920 29 C -0.126 4.126 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.198 0.802 34 H 0.220 0.780 35 H 0.260 0.740 36 H 0.405 0.595 37 H 0.042 0.958 38 H 0.039 0.961 39 H 0.371 0.629 40 H 0.249 0.751 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.042 0.958 44 H 0.049 0.951 45 H 0.077 0.923 46 H 0.061 0.939 47 H 0.033 0.967 48 H 0.064 0.936 49 H 0.044 0.956 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.559 15.659 -16.000 25.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.057 4.057 3 C -0.156 4.156 4 C -0.058 4.058 5 N -0.041 5.041 6 C -0.129 4.129 7 N -0.163 5.163 8 C -0.252 4.252 9 C 0.391 3.609 10 O -0.457 6.457 11 N -0.342 5.342 12 C 0.054 3.946 13 H 0.074 0.926 14 C 0.019 3.981 15 N -0.386 5.386 16 C -0.376 4.376 17 H 0.098 0.902 18 C -0.268 4.268 19 N -0.621 5.621 20 Si 0.806 3.194 21 H -0.201 1.201 22 H -0.224 1.224 23 H -0.203 1.203 24 C -0.072 4.072 25 C -0.192 4.192 26 C -0.194 4.194 27 C -0.175 4.175 28 C -0.034 4.034 29 C -0.146 4.146 30 H 0.104 0.896 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.215 0.785 34 H 0.236 0.764 35 H 0.276 0.724 36 H 0.240 0.760 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.202 0.798 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.096 0.904 46 H 0.080 0.920 47 H 0.052 0.948 48 H 0.083 0.917 49 H 0.063 0.937 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.268 14.826 -15.970 24.532 hybrid contribution 0.413 0.242 1.254 1.342 sum -10.856 15.069 -14.716 23.696 Atomic orbital electron populations 1.20904 0.87650 1.04596 1.03818 1.20452 0.98749 0.91799 0.94708 1.21387 0.92329 1.00054 1.01823 1.22702 0.93788 0.88796 1.00526 1.43268 1.08478 1.06615 1.45780 1.25872 0.83383 0.93819 1.09831 1.69960 1.26084 1.06189 1.14091 1.20387 0.88901 0.93499 1.22433 1.16690 0.84601 0.84216 0.75440 1.90716 1.22928 1.78374 1.53655 1.45637 1.09174 1.06083 1.73262 1.21146 0.97730 0.79240 0.96523 0.92566 1.21219 0.94775 0.96136 0.85962 1.42551 1.35155 1.44933 1.15951 1.19627 1.05418 1.15034 0.97552 0.90203 1.25620 1.02363 0.99684 0.99178 1.69877 1.42480 1.31203 1.18549 0.85157 0.79239 0.77541 0.77462 1.20126 1.22401 1.20328 1.20865 0.96598 0.96725 0.93008 1.21852 0.96591 1.00967 0.99835 1.21865 1.01815 0.92963 1.02802 1.21741 0.96690 0.99052 0.99980 1.19381 0.93772 0.85897 1.04378 1.20574 0.89306 1.00742 1.03981 0.89629 0.88061 0.91381 0.78510 0.76364 0.72425 0.76034 0.94037 0.94305 0.79763 0.94266 0.92148 0.90882 0.93904 0.93156 0.90404 0.92041 0.94833 0.91696 0.93703 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.03 71.24 0.71 -0.54 16 2 C -0.05 -0.93 5.89 -19.78 -0.12 -1.04 16 3 C -0.14 -1.49 9.67 22.06 0.21 -1.28 16 4 C 0.06 0.79 10.95 83.22 0.91 1.70 16 5 N -0.37 -8.63 2.94 -350.66 -1.03 -9.66 16 6 C 0.15 3.71 12.73 179.96 2.29 6.00 16 7 N -0.45 -15.95 10.90 -187.24 -2.04 -17.99 16 8 C -0.12 -4.66 7.05 41.23 0.29 -4.37 16 9 C 0.60 25.33 6.13 86.33 0.53 25.86 16 10 O -0.58 -25.46 12.87 -4.58 -0.06 -25.52 16 11 N -0.69 -28.32 3.64 -446.82 -1.62 -29.94 16 12 C 0.16 6.20 1.69 44.99 0.08 6.28 16 13 H 0.06 2.52 7.58 -2.39 -0.02 2.50 16 14 C 0.15 6.23 5.10 86.38 0.44 6.67 16 15 N -0.74 -40.52 5.43 -343.45 -1.87 -42.38 16 16 C -0.24 -14.26 9.99 84.03 0.84 -13.42 16 17 H 0.08 4.39 7.83 -2.92 -0.02 4.36 16 18 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 19 N -0.97 -62.85 13.06 21.65 0.28 -62.57 16 20 Si 0.98 47.90 29.55 68.60 2.03 49.93 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 23 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 24 C -0.07 -2.17 0.62 -52.18 -0.03 -2.21 16 25 C -0.14 -3.77 7.97 71.98 0.57 -3.19 16 26 C -0.14 -3.65 8.12 71.98 0.58 -3.06 16 27 C -0.12 -3.69 7.00 71.98 0.50 -3.18 16 28 C 0.08 2.55 6.72 39.22 0.26 2.82 16 29 C -0.13 -3.49 9.38 22.30 0.21 -3.28 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.10 0.53 8.10 -2.38 -0.02 0.51 16 32 H 0.07 0.86 8.08 -2.39 -0.02 0.84 16 33 H 0.20 0.31 8.06 -2.91 -0.02 0.28 16 34 H 0.22 0.44 8.06 -2.91 -0.02 0.42 16 35 H 0.26 3.56 8.06 -2.91 -0.02 3.54 16 36 H 0.40 17.17 8.30 -92.70 -0.77 16.40 16 37 H 0.04 1.74 6.71 -2.39 -0.02 1.72 16 38 H 0.04 1.61 6.17 -2.39 -0.01 1.59 16 39 H 0.37 22.31 7.33 -92.71 -0.68 21.63 16 40 H 0.25 15.64 8.31 -92.71 -0.77 14.87 16 41 H 0.06 1.69 6.32 -2.39 -0.02 1.68 16 42 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.04 1.28 7.60 -2.39 -0.02 1.27 16 44 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 46 H 0.06 1.65 6.54 -2.39 -0.02 1.63 16 47 H 0.03 1.18 5.78 -2.39 -0.01 1.16 16 48 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.04 1.54 7.52 -2.39 -0.02 1.52 16 50 H 0.14 4.21 7.17 -2.91 -0.02 4.19 16 Total: -1.00 -83.67 398.48 3.97 -79.70 By element: Atomic # 1 Polarization: 49.30 SS G_CDS: -0.48 Total: 48.82 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 8.76 Total: 9.62 kcal Atomic # 7 Polarization: -156.27 SS G_CDS: -6.28 Total: -162.54 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.06 Total: -25.52 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.93 kcal Total: -83.67 3.97 -79.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755827206.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.787 kcal (2) G-P(sol) polarization free energy of solvation -83.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds