Wall clock time and date at job start Wed Apr 1 2020 03:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34292 * 126.66001 * 2 1 4 4 C 1.50701 * 125.34351 * 0.02562 * 3 2 1 5 5 N 1.36932 * 109.31004 * 179.97438 * 3 2 1 6 6 C 1.46495 * 124.92993 * 179.97438 * 5 3 2 7 7 C 1.54262 * 110.48655 * 115.17240 * 6 5 3 8 8 C 1.53878 * 106.59861 * 142.29068 * 7 6 5 9 9 C 1.54267 * 106.63967 * 359.97438 * 8 7 6 10 10 C 1.54887 * 110.48752 * 229.94977 * 6 5 3 11 11 C 1.35807 * 110.14178 * 0.24732 * 5 3 2 12 12 N 1.38692 * 126.05214 * 179.71890 * 11 5 3 13 13 C 1.34780 * 119.99946 * 209.91271 * 12 11 5 14 14 O 1.21277 * 119.99942 * 6.02406 * 13 12 11 15 15 C 1.50703 * 119.99857 * 186.01778 * 13 12 11 16 16 N 1.46504 * 109.46796 * 174.99311 * 15 13 12 17 17 C 1.46498 * 119.99914 * 94.98680 * 16 15 13 18 18 C 1.36935 * 119.99760 * 274.98299 * 16 15 13 19 19 H 1.08003 * 120.00221 * 4.85804 * 18 16 15 20 20 C 1.38816 * 119.99552 * 184.84575 * 18 16 15 21 21 N 1.31620 * 119.99969 * 5.02141 * 20 18 16 22 22 Si 1.86800 * 119.99693 * 185.01569 * 20 18 16 23 23 H 1.48498 * 109.47275 * 90.00581 * 22 20 18 24 24 H 1.48505 * 109.47056 * 210.00654 * 22 20 18 25 25 H 1.48493 * 109.47372 * 330.00375 * 22 20 18 26 26 C 1.38784 * 107.89090 * 359.60516 * 11 5 3 27 27 C 1.43201 * 127.01249 * 180.14890 * 26 11 5 28 28 N 3.64538 * 92.43076 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47169 * 90.00170 * 1 2 3 30 30 H 1.09007 * 109.46985 * 209.99606 * 1 2 3 31 31 H 1.08998 * 109.47057 * 329.99747 * 1 2 3 32 32 H 1.09002 * 109.47146 * 269.99328 * 4 3 2 33 33 H 1.08997 * 109.47673 * 29.99632 * 4 3 2 34 34 H 1.09010 * 109.46792 * 150.00105 * 4 3 2 35 35 H 1.09003 * 110.53791 * 352.56020 * 6 5 3 36 36 H 1.09001 * 110.03492 * 23.00536 * 7 6 5 37 37 H 1.09000 * 110.03129 * 261.57143 * 7 6 5 38 38 H 1.08992 * 110.03583 * 119.28675 * 8 7 6 39 39 H 1.08998 * 110.03001 * 240.67076 * 8 7 6 40 40 H 1.08995 * 110.48411 * 95.09396 * 9 8 7 41 41 H 1.08994 * 110.48623 * 217.74234 * 9 8 7 42 42 H 1.08999 * 110.75289 * 321.69413 * 10 6 5 43 43 H 1.08999 * 110.75993 * 85.06184 * 10 6 5 44 44 H 0.97004 * 120.00355 * 29.91819 * 12 11 5 45 45 H 1.08993 * 109.47384 * 294.99571 * 15 13 12 46 46 H 1.08999 * 109.46661 * 54.99467 * 15 13 12 47 47 H 1.09003 * 109.47296 * 4.62295 * 17 16 15 48 48 H 1.08997 * 109.46959 * 124.62335 * 17 16 15 49 49 H 1.09004 * 109.47202 * 244.62311 * 17 16 15 50 50 H 0.97003 * 119.99532 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3088 1.0773 0.0000 4 6 1.8432 2.5106 0.0005 5 7 3.6158 0.6689 0.0006 6 6 4.7746 1.5652 0.0002 7 6 5.5774 1.4102 1.3083 8 6 7.0640 1.5258 0.9281 9 6 7.1137 1.7464 -0.5979 10 6 5.7748 1.1576 -1.1099 11 6 3.6820 -0.6875 -0.0045 12 7 4.8417 -1.4481 -0.0111 13 6 4.8484 -2.6616 -0.5976 14 8 3.8758 -3.0427 -1.2136 15 6 6.0646 -3.5448 -0.4879 16 7 5.7809 -4.8448 -1.1008 17 6 6.1562 -5.0950 -2.4946 18 6 5.1649 -5.8261 -0.3708 19 1 4.8177 -5.6170 0.6303 20 6 4.9866 -7.0894 -0.9177 21 7 5.4959 -7.3737 -2.0976 22 14 4.0237 -8.3860 0.0210 23 1 2.5872 -8.2971 -0.3445 24 1 4.5403 -9.7343 -0.3263 25 1 4.1783 -8.1576 1.4801 26 6 2.3836 -1.1777 0.0005 27 6 1.9810 -2.5520 0.0008 28 7 1.6616 -3.6421 -0.0016 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.7307 2.8564 -1.0270 33 1 0.8847 2.5811 0.5147 34 1 2.5777 3.1310 0.5143 35 1 4.4579 2.5997 -0.1327 36 1 5.3807 0.4351 1.7539 37 1 5.3083 2.2019 2.0076 38 1 7.5163 2.3734 1.4428 39 1 7.5888 0.6071 1.1898 40 1 7.1752 2.8100 -0.8278 41 1 7.9578 1.2116 -1.0333 42 1 5.8376 0.0727 -1.1938 43 1 5.4960 1.6044 -2.0642 44 1 5.6480 -1.1068 0.4065 45 1 6.9023 -3.0752 -1.0033 46 1 6.3175 -3.6859 0.5629 47 1 6.7038 -4.2364 -2.8832 48 1 6.7870 -5.9824 -2.5473 49 1 5.2571 -5.2525 -3.0904 50 1 5.3716 -8.2567 -2.4795 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972543.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:50 Heat of formation + Delta-G solvation = 56.154900 kcal Electronic energy + Delta-G solvation = -31629.971272 eV Core-core repulsion = 27658.589692 eV Total energy + Delta-G solvation = -3971.381580 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.81503 -40.54026 -38.76593 -37.36653 -36.96656 -35.85749 -33.77946 -33.39817 -32.11925 -29.77441 -29.70077 -29.16790 -28.06798 -27.80749 -25.68279 -24.38639 -23.30660 -21.67668 -21.40858 -20.91800 -20.30946 -19.01848 -18.81903 -17.94264 -17.40887 -16.99590 -16.84157 -16.44373 -16.11443 -15.85040 -15.48000 -15.13184 -14.86590 -14.82580 -14.44962 -14.21169 -14.11819 -13.96867 -13.82491 -13.77080 -13.72078 -13.42009 -13.29026 -13.16072 -12.95830 -12.84428 -12.82105 -12.63751 -12.32595 -12.22431 -12.12685 -12.08152 -12.05714 -11.96577 -11.87991 -11.80586 -11.31825 -11.13714 -10.96953 -10.69672 -9.33606 -9.07599 -8.52018 -7.79162 -5.29469 0.55797 1.28938 1.34483 1.40700 1.41479 1.44169 1.80221 2.13209 2.25286 2.43852 2.87976 3.27021 3.47339 3.55687 3.57720 3.59623 3.77410 3.91296 4.06470 4.21371 4.33570 4.38389 4.44376 4.45429 4.47309 4.51400 4.52953 4.56379 4.71473 4.72932 4.83830 4.89173 4.91385 4.98996 5.00146 5.08872 5.10021 5.17894 5.24466 5.28314 5.31380 5.35499 5.39691 5.48058 5.53130 5.79149 5.84847 5.89640 6.24906 6.40542 6.48234 7.02184 7.07833 7.26702 7.77020 8.09463 9.12408 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012164 B = 0.003866 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.254296 B = 7240.002493 C = 8892.250848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.134 4.134 3 C 0.037 3.963 4 C -0.078 4.078 5 N -0.432 5.432 6 C 0.118 3.882 7 C -0.138 4.138 8 C -0.123 4.123 9 C -0.114 4.114 10 C -0.149 4.149 11 C 0.326 3.674 12 N -0.644 5.644 13 C 0.469 3.531 14 O -0.527 6.527 15 C 0.138 3.862 16 N -0.594 5.594 17 C 0.176 3.824 18 C -0.238 4.238 19 H 0.063 0.937 20 C -0.053 4.053 21 N -0.937 5.937 22 Si 0.960 3.040 23 H -0.307 1.307 24 H -0.279 1.279 25 H -0.267 1.267 26 C -0.177 4.177 27 C 0.312 3.688 28 N -0.507 5.507 29 H 0.065 0.935 30 H 0.039 0.961 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.142 0.858 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.424 0.576 45 H 0.121 0.879 46 H 0.099 0.901 47 H 0.031 0.969 48 H 0.062 0.938 49 H -0.027 1.027 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.825 32.810 7.229 33.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.141 4.141 3 C -0.071 4.071 4 C -0.135 4.135 5 N -0.113 5.113 6 C 0.018 3.982 7 C -0.177 4.177 8 C -0.160 4.160 9 C -0.152 4.152 10 C -0.188 4.188 11 C 0.112 3.888 12 N -0.297 5.297 13 C 0.255 3.745 14 O -0.398 6.398 15 C 0.006 3.994 16 N -0.314 5.314 17 C 0.032 3.968 18 C -0.368 4.368 19 H 0.081 0.919 20 C -0.247 4.247 21 N -0.587 5.587 22 Si 0.789 3.211 23 H -0.236 1.236 24 H -0.204 1.204 25 H -0.192 1.192 26 C -0.190 4.190 27 C 0.000 4.000 28 N -0.188 5.188 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.120 0.880 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.160 0.840 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.264 0.736 45 H 0.139 0.861 46 H 0.116 0.884 47 H 0.050 0.950 48 H 0.081 0.919 49 H -0.008 1.008 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.978 30.819 6.687 31.676 hybrid contribution -0.533 -1.216 0.135 1.335 sum 2.445 29.603 6.822 30.477 Atomic orbital electron populations 1.20185 0.88366 1.02737 1.02088 1.20281 0.95894 0.88644 1.09301 1.20373 0.80496 0.97304 1.08899 1.20513 1.03024 0.85928 1.04064 1.44051 1.07483 1.02050 1.57696 1.22868 0.83344 0.94733 0.97268 1.22642 0.95854 1.03134 0.96022 1.22151 0.94397 1.03517 0.95976 1.22312 0.95555 1.02126 0.95237 1.23071 0.95879 1.01662 0.98170 1.17089 0.86604 0.82402 1.02693 1.43335 1.11503 1.17215 1.57639 1.24125 0.92776 0.80662 0.76964 1.90736 1.36857 1.72044 1.40182 1.21145 0.92618 0.84478 1.01161 1.44020 1.68268 1.08655 1.10439 1.21012 0.96191 0.97428 0.82217 1.19354 1.30026 0.90261 0.97128 0.91930 1.25460 1.01570 0.99644 0.97981 1.70305 1.49577 1.20610 1.18175 0.85364 0.77650 0.79317 0.78732 1.23589 1.20429 1.19214 1.16438 0.92468 0.85223 1.24911 1.24965 0.91756 0.92010 0.91244 1.81180 1.11690 1.12511 1.13408 0.91634 0.94183 0.88046 0.89679 0.88493 0.89348 0.84049 0.92556 0.88567 0.89379 0.91108 0.89438 0.90630 0.92081 0.90535 0.73582 0.86147 0.88365 0.95039 0.91935 1.00837 0.94497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.69 10.08 71.23 0.72 -0.97 16 2 C -0.13 -3.56 6.34 -18.52 -0.12 -3.67 16 3 C 0.04 0.69 6.85 40.86 0.28 0.97 16 4 C -0.08 -0.63 9.63 71.24 0.69 0.06 16 5 N -0.43 -8.43 2.70 -477.43 -1.29 -9.72 16 6 C 0.12 1.29 3.34 46.06 0.15 1.44 16 7 C -0.14 -1.18 5.95 31.32 0.19 -0.99 16 8 C -0.12 -0.74 6.80 31.32 0.21 -0.53 16 9 C -0.11 -0.79 6.84 31.70 0.22 -0.58 16 10 C -0.15 -1.85 6.20 31.91 0.20 -1.65 16 11 C 0.33 9.54 6.37 132.04 0.84 10.38 16 12 N -0.64 -18.29 3.66 -306.79 -1.12 -19.41 16 13 C 0.47 18.68 7.47 87.66 0.65 19.33 16 14 O -0.53 -27.54 12.15 -3.02 -0.04 -27.58 16 15 C 0.14 5.27 6.17 85.63 0.53 5.80 16 16 N -0.59 -31.45 2.44 -731.30 -1.79 -33.23 16 17 C 0.18 9.42 9.07 127.77 1.16 10.58 16 18 C -0.24 -14.31 9.79 84.03 0.82 -13.49 16 19 H 0.06 3.79 7.83 -2.91 -0.02 3.76 16 20 C -0.05 -3.30 5.43 84.86 0.46 -2.84 16 21 N -0.94 -59.32 9.52 21.65 0.21 -59.11 16 22 Si 0.96 51.50 29.56 68.60 2.03 53.53 16 23 H -0.31 -17.47 7.11 99.48 0.71 -16.76 16 24 H -0.28 -14.24 7.11 99.48 0.71 -13.53 16 25 H -0.27 -13.57 7.11 99.48 0.71 -12.87 16 26 C -0.18 -6.42 5.89 -19.66 -0.12 -6.54 16 27 C 0.31 14.81 12.18 88.33 1.08 15.89 16 28 N -0.51 -28.03 17.98 19.00 0.34 -27.69 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.10 1.40 7.11 -2.39 -0.02 1.39 16 32 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.10 0.57 7.09 -2.39 -0.02 0.55 16 34 H 0.09 0.31 7.13 -2.38 -0.02 0.29 16 35 H 0.14 0.75 6.73 -2.39 -0.02 0.73 16 36 H 0.06 0.71 6.54 -2.39 -0.02 0.70 16 37 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.06 1.09 5.40 -2.39 -0.01 1.07 16 43 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.42 8.40 6.39 -92.71 -0.59 7.80 16 45 H 0.12 3.51 7.78 -2.39 -0.02 3.49 16 46 H 0.10 3.35 8.08 -2.39 -0.02 3.33 16 47 H 0.03 1.38 7.71 -2.39 -0.02 1.36 16 48 H 0.06 3.60 6.20 -2.39 -0.01 3.58 16 49 H -0.03 -1.70 7.76 -2.38 -0.02 -1.72 16 50 H 0.24 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -93.19 397.05 6.67 -86.51 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: 0.37 Total: 3.52 kcal Atomic # 6 Polarization: 25.23 SS G_CDS: 7.96 Total: 33.19 kcal Atomic # 7 Polarization: -145.52 SS G_CDS: -3.65 Total: -149.17 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.04 Total: -27.58 kcal Atomic # 14 Polarization: 51.50 SS G_CDS: 2.03 Total: 53.53 kcal Total: -93.19 6.67 -86.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972543.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.669 kcal (2) G-P(sol) polarization free energy of solvation -93.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds