Wall clock time and date at job start Wed Apr 1 2020 03:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30835 * 125.89697 * 2 1 4 4 N 1.40088 * 108.20366 * 180.02562 * 3 2 1 5 5 C 1.46501 * 126.03787 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47085 * 90.01717 * 5 4 3 7 7 H 1.08003 * 120.00262 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00074 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00184 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99621 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.46910 * 89.99947 * 10 8 6 12 12 H 1.48497 * 109.47129 * 209.99426 * 10 8 6 13 13 H 1.48497 * 109.47523 * 329.99613 * 10 8 6 14 14 C 1.34951 * 107.92499 * 359.75709 * 4 3 2 15 15 C 1.50701 * 126.12756 * 180.24433 * 14 4 3 16 16 C 1.35316 * 107.74311 * 0.38913 * 14 4 3 17 17 C 1.50702 * 126.03937 * 179.86943 * 16 14 4 18 18 C 1.52999 * 109.47522 * 269.72124 * 17 16 14 19 19 C 1.50698 * 109.47004 * 179.97438 * 18 17 16 20 20 O 1.21283 * 120.00472 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99538 * 179.97438 * 19 18 17 22 22 C 1.46499 * 119.99665 * 179.72653 * 21 19 18 23 23 C 1.50703 * 109.47138 * 180.28062 * 22 21 19 24 24 C 1.34845 * 125.89308 * 94.69227 * 23 22 21 25 25 C 1.40890 * 107.41681 * 179.88840 * 24 23 22 26 26 C 1.34851 * 107.41690 * 0.37316 * 25 24 23 27 27 N 1.36340 * 108.21829 * 359.77516 * 26 25 24 28 28 C 1.46494 * 125.63650 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.46947 * 269.97618 * 1 2 3 30 30 H 1.09008 * 109.47315 * 29.97311 * 1 2 3 31 31 H 1.08998 * 109.47199 * 149.97210 * 1 2 3 32 32 H 1.08996 * 109.47156 * 210.01760 * 5 4 3 33 33 H 1.08998 * 109.46670 * 330.02176 * 5 4 3 34 34 H 0.96996 * 119.99850 * 180.02562 * 9 8 6 35 35 H 1.08991 * 109.46822 * 270.17608 * 15 14 4 36 36 H 1.08996 * 109.46984 * 30.17464 * 15 14 4 37 37 H 1.08995 * 109.46765 * 150.17371 * 15 14 4 38 38 H 1.09000 * 109.47047 * 149.71429 * 17 16 14 39 39 H 1.09007 * 109.46879 * 29.72442 * 17 16 14 40 40 H 1.09003 * 109.46690 * 59.99942 * 18 17 16 41 41 H 1.08993 * 109.46773 * 300.00278 * 18 17 16 42 42 H 0.97001 * 120.00485 * 0.02562 * 21 19 18 43 43 H 1.09009 * 109.47454 * 300.27637 * 22 21 19 44 44 H 1.08998 * 109.47492 * 60.27932 * 22 21 19 45 45 H 1.08003 * 126.29113 * 0.02562 * 24 23 22 46 46 H 1.08008 * 126.29095 * 180.13122 * 25 24 23 47 47 H 1.08001 * 125.89066 * 179.80340 * 26 25 24 48 48 H 1.09003 * 109.47383 * 269.97252 * 28 27 26 49 49 H 1.09005 * 109.47099 * 29.97022 * 28 27 26 50 50 H 1.08999 * 109.47306 * 149.97443 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0003 6 6 5.1955 1.7966 1.4207 7 1 4.6302 1.3803 2.2414 8 6 6.2888 2.5979 1.6729 9 7 6.6431 2.8556 2.9129 10 14 7.2669 3.3173 0.2533 11 1 6.6982 4.6370 -0.1210 12 1 8.6837 3.4875 0.6644 13 1 7.1965 2.3993 -0.9118 14 6 3.6142 -0.7154 0.0045 15 6 4.8350 -1.5989 0.0110 16 6 2.3271 -1.1330 -0.0006 17 6 1.8598 -2.5657 -0.0004 18 6 1.7014 -3.0508 -1.4428 19 6 1.2347 -4.4837 -1.4424 20 8 1.0468 -5.0601 -0.3920 21 7 1.0251 -5.1244 -2.6095 22 6 0.5772 -6.5192 -2.6093 23 6 0.4260 -6.9985 -4.0300 24 6 1.3574 -7.6630 -4.7436 25 6 0.8091 -7.9215 -6.0155 26 6 -0.4334 -7.3977 -6.0334 27 7 -0.6742 -6.8298 -4.8175 28 6 -1.9109 -6.1512 -4.4223 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8903 -0.5134 31 1 -0.3633 -0.8897 -0.5143 32 1 5.6091 0.9987 -0.5149 33 1 4.5560 2.4337 -0.5131 34 1 7.4120 3.4196 3.0904 35 1 5.1338 -1.8132 -1.0150 36 1 5.6488 -1.0903 0.5278 37 1 4.6052 -2.5322 0.5250 38 1 0.9012 -2.6352 0.5138 39 1 2.5934 -3.1871 0.5135 40 1 2.6601 -2.9814 -1.9567 41 1 0.9679 -2.4295 -1.9564 42 1 1.1750 -4.6633 -3.4497 43 1 1.3127 -7.1370 -2.0938 44 1 -0.3820 -6.5927 -2.0969 45 1 2.3418 -7.9470 -4.4021 46 1 1.2961 -8.4400 -6.8282 47 1 -1.1196 -7.4241 -6.8670 48 1 -1.8371 -5.0911 -4.6650 49 1 -2.7529 -6.5890 -4.9586 50 1 -2.0628 -6.2685 -3.3494 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075352575.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:57 Heat of formation + Delta-G solvation = 71.910045 kcal Electronic energy + Delta-G solvation = -29033.809377 eV Core-core repulsion = 25063.110991 eV Total energy + Delta-G solvation = -3970.698386 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.66419 -40.70345 -39.62261 -35.13784 -34.44210 -33.38567 -33.26848 -32.49348 -30.93323 -30.04251 -29.25140 -27.09220 -26.79312 -26.10501 -25.56564 -23.47820 -21.88589 -20.99110 -20.53775 -19.65437 -18.87798 -18.68901 -17.72490 -17.12785 -16.78411 -16.16381 -15.87283 -15.48156 -15.37340 -14.74937 -14.61235 -14.15488 -13.92712 -13.77949 -13.65273 -13.27066 -13.14180 -12.90979 -12.89933 -12.71803 -12.66688 -12.53423 -12.45691 -12.34444 -12.20895 -12.03572 -12.01341 -11.87534 -11.52868 -11.29460 -10.97588 -10.75532 -10.75249 -10.23621 -10.01840 -9.69669 -9.67078 -9.33367 -8.99570 -8.79836 -8.49665 -8.24408 -7.52517 -6.27617 -4.30946 1.68672 2.50156 2.57556 2.58277 2.67937 3.13841 3.16200 3.19585 3.21289 3.39268 3.50059 4.19836 4.25196 4.31910 4.65962 4.67633 4.74613 4.89028 4.97958 4.99458 5.15186 5.21819 5.23432 5.29267 5.30558 5.35473 5.38804 5.61662 5.71343 5.81775 5.88401 5.91619 5.91924 5.95298 5.96551 5.99250 6.12756 6.19444 6.31864 6.35246 6.44434 6.50296 6.61268 6.80195 6.81175 6.92752 6.93026 7.27504 7.29473 7.41662 7.85207 8.09654 8.30026 8.58565 8.77920 9.27463 10.84862 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017853 B = 0.001925 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.004651 B =14541.584117 C =15088.876952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.054 3.946 3 N -0.294 5.294 4 N -0.325 5.325 5 C 0.230 3.770 6 C -0.541 4.541 7 H 0.080 0.920 8 C 0.079 3.921 9 N -0.885 5.885 10 Si 0.874 3.126 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.265 1.265 14 C 0.098 3.902 15 C -0.094 4.094 16 C -0.265 4.265 17 C -0.011 4.011 18 C -0.133 4.133 19 C 0.514 3.486 20 O -0.538 6.538 21 N -0.735 5.735 22 C 0.192 3.808 23 C -0.011 4.011 24 C -0.173 4.173 25 C -0.203 4.203 26 C -0.007 4.007 27 N -0.443 5.443 28 C 0.069 3.931 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.269 0.731 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.402 0.598 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.162 0.838 48 H 0.074 0.926 49 H 0.084 0.916 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.574 -20.198 -18.454 30.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.111 4.111 3 N -0.118 5.118 4 N -0.104 5.104 5 C 0.111 3.889 6 C -0.580 4.580 7 H 0.098 0.902 8 C -0.126 4.126 9 N -0.522 5.522 10 Si 0.700 3.300 11 H -0.196 1.196 12 H -0.205 1.205 13 H -0.189 1.189 14 C -0.033 4.033 15 C -0.152 4.152 16 C -0.277 4.277 17 C -0.050 4.050 18 C -0.173 4.173 19 C 0.301 3.699 20 O -0.415 6.415 21 N -0.388 5.388 22 C 0.068 3.932 23 C -0.122 4.122 24 C -0.199 4.199 25 C -0.227 4.227 26 C -0.138 4.138 27 N -0.119 5.119 28 C -0.073 4.073 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.236 0.764 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.155 0.845 46 H 0.155 0.845 47 H 0.180 0.820 48 H 0.093 0.907 49 H 0.102 0.898 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.727 -18.922 -17.436 29.646 hybrid contribution 0.697 -0.069 -1.100 1.304 sum -14.030 -18.991 -18.536 30.018 Atomic orbital electron populations 1.20030 0.87922 1.02039 1.02296 1.21966 0.96163 0.90716 1.02230 1.77268 0.87221 1.22642 1.24662 1.48792 1.05397 1.04041 1.52216 1.19969 0.79466 0.89807 0.99677 1.21170 1.13913 1.32503 0.90365 0.90151 1.24820 0.96620 0.95327 0.95798 1.69873 1.26804 1.36925 1.18631 0.86886 0.79994 0.80454 0.82640 1.19632 1.20524 1.18932 1.20766 0.96275 0.85345 1.00922 1.20433 0.94414 0.98053 1.02282 1.19362 0.91310 0.95176 1.21883 1.19408 1.01745 0.90735 0.93126 1.21744 1.03053 0.91116 1.01356 1.21077 0.76457 0.89283 0.83057 1.90709 1.50963 1.68577 1.31221 1.46245 1.70254 1.13081 1.09237 1.19570 1.00869 0.82835 0.89911 1.20259 0.88882 1.08541 0.94528 1.20810 0.99500 1.04895 0.94695 1.20926 0.95539 1.07641 0.98641 1.21875 0.99325 1.03722 0.88884 1.43962 1.12753 1.43758 1.11412 1.22055 0.84731 0.97911 1.02565 0.91217 0.91610 0.91425 0.93494 0.93729 0.92106 0.91249 0.89897 0.90382 0.91200 0.91213 0.88980 0.89100 0.76429 0.89371 0.91200 0.84477 0.84537 0.82029 0.90706 0.89759 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.12 36.01 0.36 -0.52 16 2 C 0.05 1.00 7.22 -82.41 -0.59 0.41 16 3 N -0.29 -6.62 12.58 33.67 0.42 -6.20 16 4 N -0.33 -7.38 3.60 -58.31 -0.21 -7.59 16 5 C 0.23 5.52 4.88 -5.19 -0.03 5.49 16 6 C -0.54 -15.19 9.94 -34.44 -0.34 -15.54 16 7 H 0.08 2.56 8.06 -52.48 -0.42 2.14 16 8 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 9 N -0.89 -26.37 13.96 55.43 0.77 -25.60 16 10 Si 0.87 20.19 27.47 -169.99 -4.67 15.52 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 14 C 0.10 1.89 6.93 -82.26 -0.57 1.32 16 15 C -0.09 -1.49 9.69 36.01 0.35 -1.14 16 16 C -0.27 -4.62 5.35 -105.05 -0.56 -5.18 16 17 C -0.01 -0.16 4.45 -27.88 -0.12 -0.28 16 18 C -0.13 -1.43 5.68 -27.88 -0.16 -1.59 16 19 C 0.51 5.72 7.83 -10.99 -0.09 5.64 16 20 O -0.54 -8.02 15.98 5.55 0.09 -7.93 16 21 N -0.73 -6.16 5.55 -61.47 -0.34 -6.50 16 22 C 0.19 1.58 5.83 -5.19 -0.03 1.55 16 23 C -0.01 -0.09 6.26 -81.79 -0.51 -0.60 16 24 C -0.17 -1.45 10.76 -39.78 -0.43 -1.88 16 25 C -0.20 -1.56 10.86 -39.78 -0.43 -1.99 16 26 C -0.01 -0.05 11.43 -16.75 -0.19 -0.24 16 27 N -0.44 -3.01 3.15 -119.90 -0.38 -3.39 16 28 C 0.07 0.28 10.92 59.84 0.65 0.94 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.86 8.14 -51.92 -0.42 0.43 16 31 H 0.07 0.75 7.92 -51.93 -0.41 0.34 16 32 H 0.05 1.05 6.73 -51.93 -0.35 0.70 16 33 H 0.04 1.07 7.57 -51.93 -0.39 0.68 16 34 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.08 1.47 7.74 -51.93 -0.40 1.07 16 37 H 0.08 1.09 7.14 -51.93 -0.37 0.72 16 38 H 0.07 0.99 7.88 -51.93 -0.41 0.58 16 39 H 0.07 1.02 7.10 -51.93 -0.37 0.65 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.40 2.74 8.46 -40.82 -0.35 2.40 16 43 H 0.09 0.79 8.14 -51.92 -0.42 0.36 16 44 H 0.07 0.59 7.21 -51.93 -0.37 0.21 16 45 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 46 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 47 H 0.16 0.65 8.06 -52.49 -0.42 0.23 16 48 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 49 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 50 H 0.08 0.34 7.12 -51.93 -0.37 -0.02 16 LS Contribution 417.19 15.07 6.29 6.29 Total: -1.00 -35.03 417.19 -8.85 -43.87 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -8.03 Total: 3.03 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -2.79 Total: -11.51 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.27 Total: -49.28 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.09 Total: -7.93 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.67 Total: 15.52 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -35.03 -8.85 -43.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075352575.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.784 kcal (2) G-P(sol) polarization free energy of solvation -35.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds