Wall clock time and date at job start Wed Apr 1 2020 03:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30835 * 125.89697 * 2 1 4 4 N 1.40088 * 108.20366 * 180.02562 * 3 2 1 5 5 C 1.46501 * 126.03787 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47085 * 90.01717 * 5 4 3 7 7 H 1.08003 * 120.00262 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00074 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00184 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99621 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.46910 * 89.99947 * 10 8 6 12 12 H 1.48497 * 109.47129 * 209.99426 * 10 8 6 13 13 H 1.48497 * 109.47523 * 329.99613 * 10 8 6 14 14 C 1.34951 * 107.92499 * 359.75709 * 4 3 2 15 15 C 1.50701 * 126.12756 * 180.24433 * 14 4 3 16 16 C 1.35316 * 107.74311 * 0.38913 * 14 4 3 17 17 C 1.50702 * 126.03937 * 179.86943 * 16 14 4 18 18 C 1.52999 * 109.47522 * 269.72124 * 17 16 14 19 19 C 1.50698 * 109.47004 * 179.97438 * 18 17 16 20 20 O 1.21283 * 120.00472 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99538 * 179.97438 * 19 18 17 22 22 C 1.46499 * 119.99665 * 179.72653 * 21 19 18 23 23 C 1.50703 * 109.47138 * 180.28062 * 22 21 19 24 24 C 1.34845 * 125.89308 * 94.69227 * 23 22 21 25 25 C 1.40890 * 107.41681 * 179.88840 * 24 23 22 26 26 C 1.34851 * 107.41690 * 0.37316 * 25 24 23 27 27 N 1.36340 * 108.21829 * 359.77516 * 26 25 24 28 28 C 1.46494 * 125.63650 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.46947 * 269.97618 * 1 2 3 30 30 H 1.09008 * 109.47315 * 29.97311 * 1 2 3 31 31 H 1.08998 * 109.47199 * 149.97210 * 1 2 3 32 32 H 1.08996 * 109.47156 * 210.01760 * 5 4 3 33 33 H 1.08998 * 109.46670 * 330.02176 * 5 4 3 34 34 H 0.96996 * 119.99850 * 180.02562 * 9 8 6 35 35 H 1.08991 * 109.46822 * 270.17608 * 15 14 4 36 36 H 1.08996 * 109.46984 * 30.17464 * 15 14 4 37 37 H 1.08995 * 109.46765 * 150.17371 * 15 14 4 38 38 H 1.09000 * 109.47047 * 149.71429 * 17 16 14 39 39 H 1.09007 * 109.46879 * 29.72442 * 17 16 14 40 40 H 1.09003 * 109.46690 * 59.99942 * 18 17 16 41 41 H 1.08993 * 109.46773 * 300.00278 * 18 17 16 42 42 H 0.97001 * 120.00485 * 0.02562 * 21 19 18 43 43 H 1.09009 * 109.47454 * 300.27637 * 22 21 19 44 44 H 1.08998 * 109.47492 * 60.27932 * 22 21 19 45 45 H 1.08003 * 126.29113 * 0.02562 * 24 23 22 46 46 H 1.08008 * 126.29095 * 180.13122 * 25 24 23 47 47 H 1.08001 * 125.89066 * 179.80340 * 26 25 24 48 48 H 1.09003 * 109.47383 * 269.97252 * 28 27 26 49 49 H 1.09005 * 109.47099 * 29.97022 * 28 27 26 50 50 H 1.08999 * 109.47306 * 149.97443 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0003 6 6 5.1955 1.7966 1.4207 7 1 4.6302 1.3803 2.2414 8 6 6.2888 2.5979 1.6729 9 7 6.6431 2.8556 2.9129 10 14 7.2669 3.3173 0.2533 11 1 6.6982 4.6370 -0.1210 12 1 8.6837 3.4875 0.6644 13 1 7.1965 2.3993 -0.9118 14 6 3.6142 -0.7154 0.0045 15 6 4.8350 -1.5989 0.0110 16 6 2.3271 -1.1330 -0.0006 17 6 1.8598 -2.5657 -0.0004 18 6 1.7014 -3.0508 -1.4428 19 6 1.2347 -4.4837 -1.4424 20 8 1.0468 -5.0601 -0.3920 21 7 1.0251 -5.1244 -2.6095 22 6 0.5772 -6.5192 -2.6093 23 6 0.4260 -6.9985 -4.0300 24 6 1.3574 -7.6630 -4.7436 25 6 0.8091 -7.9215 -6.0155 26 6 -0.4334 -7.3977 -6.0334 27 7 -0.6742 -6.8298 -4.8175 28 6 -1.9109 -6.1512 -4.4223 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8903 -0.5134 31 1 -0.3633 -0.8897 -0.5143 32 1 5.6091 0.9987 -0.5149 33 1 4.5560 2.4337 -0.5131 34 1 7.4120 3.4196 3.0904 35 1 5.1338 -1.8132 -1.0150 36 1 5.6488 -1.0903 0.5278 37 1 4.6052 -2.5322 0.5250 38 1 0.9012 -2.6352 0.5138 39 1 2.5934 -3.1871 0.5135 40 1 2.6601 -2.9814 -1.9567 41 1 0.9679 -2.4295 -1.9564 42 1 1.1750 -4.6633 -3.4497 43 1 1.3127 -7.1370 -2.0938 44 1 -0.3820 -6.5927 -2.0969 45 1 2.3418 -7.9470 -4.4021 46 1 1.2961 -8.4400 -6.8282 47 1 -1.1196 -7.4241 -6.8670 48 1 -1.8371 -5.0911 -4.6650 49 1 -2.7529 -6.5890 -4.9586 50 1 -2.0628 -6.2685 -3.3494 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075352575.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:56 Heat of formation + Delta-G solvation = 49.470157 kcal Electronic energy + Delta-G solvation = -29034.782444 eV Core-core repulsion = 25063.110991 eV Total energy + Delta-G solvation = -3971.671452 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.21619 -42.14576 -40.52942 -36.16514 -35.83018 -34.83013 -34.24348 -33.70681 -32.14857 -31.13951 -30.52830 -28.26492 -27.73575 -27.17888 -26.44489 -24.78155 -23.50411 -21.52015 -21.37034 -20.34923 -20.22684 -20.10897 -19.25380 -18.37471 -17.63068 -17.20569 -16.82347 -16.65442 -16.33425 -15.91381 -15.69877 -15.37365 -14.98593 -14.80429 -14.74532 -14.39350 -14.22859 -14.13306 -14.04610 -13.80466 -13.59232 -13.44727 -13.35644 -13.31425 -13.15419 -13.11168 -12.89016 -12.85182 -12.79849 -12.67482 -12.49787 -12.49286 -11.96491 -11.87417 -11.81564 -11.18597 -10.93215 -10.92074 -10.10868 -9.83218 -9.50600 -9.08088 -8.97490 -8.43013 -6.54203 1.11410 1.16323 1.31729 1.34776 1.44192 1.70336 1.88218 1.90432 2.03073 2.08363 2.23990 2.54443 2.89236 3.67676 3.78795 3.90873 3.95661 4.01910 4.15095 4.24415 4.26464 4.33085 4.38535 4.42996 4.52644 4.59515 4.60312 4.64014 4.72894 4.74099 4.74106 4.79458 4.82549 4.84192 4.86707 4.94433 5.04704 5.13689 5.21882 5.30294 5.36706 5.40971 5.41701 5.44081 5.52687 5.92098 6.06287 6.06788 6.27529 6.41447 6.46671 6.50935 6.57381 7.06471 7.10398 7.28409 8.73774 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017853 B = 0.001925 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.004651 B =14541.584117 C =15088.876952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.056 3.944 3 N -0.347 5.347 4 N -0.356 5.356 5 C 0.241 3.759 6 C -0.551 4.551 7 H 0.020 0.980 8 C 0.019 3.981 9 N -0.937 5.937 10 Si 0.953 3.047 11 H -0.266 1.266 12 H -0.273 1.273 13 H -0.234 1.234 14 C 0.080 3.920 15 C -0.090 4.090 16 C -0.257 4.257 17 C -0.005 4.005 18 C -0.123 4.123 19 C 0.519 3.481 20 O -0.580 6.580 21 N -0.718 5.718 22 C 0.197 3.803 23 C -0.021 4.021 24 C -0.191 4.191 25 C -0.224 4.224 26 C -0.004 4.004 27 N -0.444 5.444 28 C 0.063 3.937 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.043 0.957 34 H 0.274 0.726 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.412 0.588 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.136 0.864 46 H 0.145 0.855 47 H 0.189 0.811 48 H 0.083 0.917 49 H 0.104 0.896 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.507 -21.221 -21.848 34.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.109 4.109 3 N -0.171 5.171 4 N -0.136 5.136 5 C 0.121 3.879 6 C -0.589 4.589 7 H 0.039 0.961 8 C -0.181 4.181 9 N -0.576 5.576 10 Si 0.774 3.226 11 H -0.191 1.191 12 H -0.198 1.198 13 H -0.157 1.157 14 C -0.049 4.049 15 C -0.148 4.148 16 C -0.268 4.268 17 C -0.044 4.044 18 C -0.163 4.163 19 C 0.307 3.693 20 O -0.460 6.460 21 N -0.371 5.371 22 C 0.074 3.926 23 C -0.132 4.132 24 C -0.217 4.217 25 C -0.249 4.249 26 C -0.135 4.135 27 N -0.119 5.119 28 C -0.077 4.077 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.123 0.877 41 H 0.129 0.871 42 H 0.248 0.752 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.154 0.846 46 H 0.163 0.837 47 H 0.206 0.794 48 H 0.102 0.898 49 H 0.122 0.878 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.690 -19.973 -20.869 32.872 hybrid contribution 0.835 0.139 0.029 0.847 sum -14.855 -19.834 -20.840 32.378 Atomic orbital electron populations 1.20217 0.84653 1.04034 1.03245 1.22796 0.98171 0.90185 0.99771 1.77194 0.87706 1.24932 1.27250 1.48677 1.05109 1.04997 1.54804 1.19668 0.80955 0.90562 0.96707 1.21262 1.13713 1.32651 0.91244 0.96148 1.25883 0.97685 0.95370 0.99137 1.70039 1.27829 1.38092 1.21606 0.85646 0.77862 0.79896 0.79191 1.19093 1.19799 1.15719 1.21472 0.98316 0.84585 1.00510 1.20525 0.92326 0.97738 1.04225 1.19739 0.90444 0.96567 1.20087 1.19376 1.01310 0.88298 0.95439 1.21618 1.04411 0.91029 0.99219 1.21047 0.75943 0.89271 0.82991 1.90706 1.53064 1.69428 1.32753 1.46091 1.68927 1.13082 1.08968 1.19478 1.00524 0.82393 0.90253 1.20150 0.89544 1.09137 0.94378 1.20998 0.99870 1.05457 0.95414 1.21174 0.96369 1.08561 0.98756 1.22342 0.99371 1.02461 0.89361 1.44168 1.13086 1.43445 1.11241 1.22262 0.84249 0.98386 1.02838 0.90665 0.90900 0.88160 0.91324 0.93868 0.91732 0.88044 0.92252 0.88615 0.91167 0.91929 0.87695 0.87139 0.75190 0.90292 0.91216 0.84585 0.83686 0.79365 0.89842 0.87775 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.61 10.12 71.24 0.72 -0.89 16 2 C 0.06 2.03 7.22 43.10 0.31 2.34 16 3 N -0.35 -15.82 12.58 -47.39 -0.60 -16.42 16 4 N -0.36 -16.36 3.60 -338.40 -1.22 -17.58 16 5 C 0.24 11.68 4.88 85.63 0.42 12.10 16 6 C -0.55 -32.24 9.94 25.60 0.25 -31.99 16 7 H 0.02 1.39 8.06 -2.91 -0.02 1.36 16 8 C 0.02 1.08 5.47 84.66 0.46 1.54 16 9 N -0.94 -57.92 13.96 21.45 0.30 -57.62 16 10 Si 0.95 41.50 27.47 68.60 1.88 43.39 16 11 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 12 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 13 H -0.23 -8.99 6.54 99.48 0.65 -8.34 16 14 C 0.08 3.08 6.93 41.41 0.29 3.37 16 15 C -0.09 -2.78 9.69 71.24 0.69 -2.09 16 16 C -0.26 -8.65 5.35 -20.14 -0.11 -8.76 16 17 C -0.01 -0.14 4.45 29.85 0.13 0.00 16 18 C -0.12 -2.28 5.68 29.85 0.17 -2.11 16 19 C 0.52 10.44 7.83 87.66 0.69 11.13 16 20 O -0.58 -16.55 15.98 -3.04 -0.05 -16.60 16 21 N -0.72 -10.47 5.55 -466.78 -2.59 -13.06 16 22 C 0.20 3.01 5.83 85.63 0.50 3.51 16 23 C -0.02 -0.30 6.26 41.08 0.26 -0.04 16 24 C -0.19 -3.03 10.76 22.14 0.24 -2.79 16 25 C -0.22 -3.12 10.86 22.14 0.24 -2.88 16 26 C 0.00 -0.04 11.43 83.21 0.95 0.91 16 27 N -0.44 -5.04 3.15 -533.25 -1.68 -6.72 16 28 C 0.06 0.35 10.92 127.77 1.39 1.74 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.10 1.88 7.92 -2.39 -0.02 1.86 16 32 H 0.07 2.98 6.73 -2.39 -0.02 2.96 16 33 H 0.04 2.07 7.57 -2.39 -0.02 2.06 16 34 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 35 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.06 2.11 7.74 -2.39 -0.02 2.09 16 37 H 0.10 2.56 7.14 -2.39 -0.02 2.55 16 38 H 0.07 1.84 7.88 -2.39 -0.02 1.82 16 39 H 0.06 1.74 7.10 -2.38 -0.02 1.72 16 40 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.41 4.48 8.46 -92.71 -0.78 3.69 16 43 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 44 H 0.07 1.08 7.21 -2.39 -0.02 1.07 16 45 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 46 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 47 H 0.19 0.90 8.06 -2.91 -0.02 0.88 16 48 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 49 H 0.10 0.17 8.14 -2.38 -0.02 0.15 16 50 H 0.08 0.50 7.12 -2.39 -0.02 0.48 16 Total: -1.00 -80.98 417.19 3.76 -77.22 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.10 Total: 22.31 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 7.61 Total: -14.92 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -5.78 Total: -111.40 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.05 Total: -16.60 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.88 Total: 43.39 kcal Total: -80.98 3.76 -77.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075352575.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.693 kcal (2) G-P(sol) polarization free energy of solvation -80.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds