Wall clock time and date at job start Wed Apr 1 2020 03:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39771 * 125.84165 * 2 1 4 4 C 1.36168 * 107.81399 * 180.16564 * 3 2 1 5 5 N 1.39212 * 126.21873 * 179.84473 * 4 3 2 6 6 C 1.46495 * 119.99986 * 359.69552 * 5 4 3 7 7 C 1.50698 * 109.46886 * 179.97438 * 6 5 4 8 8 C 1.38288 * 119.92407 * 89.99908 * 7 6 5 9 9 C 1.38111 * 120.07382 * 179.69843 * 8 7 6 10 10 C 1.38906 * 119.92343 * 0.28047 * 9 8 7 11 11 N 1.39676 * 120.07171 * 179.97438 * 10 9 8 12 12 C 1.46499 * 120.00261 * 359.97438 * 11 10 9 13 13 C 1.46500 * 120.00062 * 179.97438 * 11 10 9 14 14 C 1.50702 * 109.47458 * 89.99484 * 13 11 10 15 15 H 1.08007 * 119.99580 * 0.02562 * 14 13 11 16 16 C 1.37875 * 120.00251 * 180.02562 * 14 13 11 17 17 N 1.31513 * 120.00212 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99942 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47202 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47179 * 119.99438 * 18 16 14 21 21 H 1.48500 * 109.46992 * 239.99882 * 18 16 14 22 22 C 1.38908 * 119.85606 * 359.97438 * 10 9 8 23 23 C 1.38112 * 119.92096 * 0.02562 * 22 10 9 24 24 N 1.35249 * 107.55876 * 359.58723 * 4 3 2 25 25 C 1.46498 * 126.04172 * 180.26651 * 24 4 3 26 26 C 1.52995 * 109.47632 * 89.99614 * 25 24 4 27 27 O 1.42895 * 109.47587 * 179.97438 * 26 25 24 28 28 N 1.30844 * 125.83522 * 179.69921 * 2 1 3 29 29 H 1.08999 * 109.47250 * 270.27828 * 1 2 3 30 30 H 1.09000 * 109.47298 * 30.27771 * 1 2 3 31 31 H 1.09003 * 109.47844 * 150.27362 * 1 2 3 32 32 H 1.07997 * 126.08911 * 0.02562 * 3 2 1 33 33 H 0.97000 * 119.99515 * 179.68528 * 5 4 3 34 34 H 1.09001 * 109.47536 * 59.99918 * 6 5 4 35 35 H 1.09003 * 109.47198 * 299.99406 * 6 5 4 36 36 H 1.08002 * 119.96530 * 359.97438 * 8 7 6 37 37 H 1.08000 * 120.03725 * 180.29787 * 9 8 7 38 38 H 1.09003 * 109.46748 * 90.00479 * 12 11 10 39 39 H 1.09000 * 109.47356 * 210.00064 * 12 11 10 40 40 H 1.09000 * 109.47257 * 330.00749 * 12 11 10 41 41 H 1.08994 * 109.47318 * 210.00032 * 13 11 10 42 42 H 1.09001 * 109.47009 * 329.99755 * 13 11 10 43 43 H 0.96992 * 120.00096 * 180.02562 * 17 16 14 44 44 H 1.07998 * 120.04186 * 180.02562 * 22 10 9 45 45 H 1.08002 * 119.96339 * 180.02562 * 23 22 10 46 46 H 1.08999 * 109.47142 * 209.99810 * 25 24 4 47 47 H 1.09005 * 109.47022 * 329.99337 * 25 24 4 48 48 H 1.08999 * 109.47017 * 300.00273 * 26 25 24 49 49 H 1.09005 * 109.47143 * 59.99798 * 26 25 24 50 50 H 0.96701 * 114.00393 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3254 1.1330 0.0000 4 6 3.6202 0.7116 -0.0037 5 7 4.7500 1.5251 -0.0081 6 6 4.6031 2.9826 -0.0156 7 6 5.9664 3.6248 -0.0184 8 6 6.5909 3.9126 -1.2182 9 6 7.8376 4.5068 -1.2244 10 6 8.4667 4.8100 -0.0237 11 7 9.7278 5.4105 -0.0264 12 6 10.3888 5.7207 -1.2964 13 6 10.3896 5.7301 1.2409 14 6 11.2273 4.5569 1.6802 15 1 11.2634 3.6627 1.0755 16 6 11.9475 4.6250 2.8539 17 7 11.9039 5.7140 3.5900 18 14 12.9863 3.1710 3.3980 19 1 12.8662 2.0764 2.4016 20 1 14.4071 3.5900 3.5047 21 1 12.5112 2.6905 4.7203 22 6 7.8389 4.5148 1.1797 23 6 6.5921 3.9206 1.1787 24 7 3.6092 -0.6408 0.0033 25 6 4.7867 -1.5124 0.0079 26 6 5.1966 -1.8083 1.4519 27 8 6.3448 -2.6589 1.4564 28 7 2.2730 -1.0607 0.0056 29 1 -0.3634 0.0050 1.0276 30 1 -0.3634 0.8875 -0.5181 31 1 -0.3635 -0.8924 -0.5096 32 1 1.9904 2.1597 0.0004 33 1 5.6344 1.1267 -0.0059 34 1 4.0555 3.2973 0.8728 35 1 4.0554 3.2880 -0.9072 36 1 6.1013 3.6765 -2.1515 37 1 8.3227 4.7357 -2.1618 38 1 10.1109 6.7255 -1.6147 39 1 11.4696 5.6667 -1.1663 40 1 10.0775 5.0008 -2.0534 41 1 11.0285 6.6030 1.1072 42 1 9.6371 5.9437 2.0000 43 1 12.4109 5.7621 4.4154 44 1 8.3251 4.7496 2.1151 45 1 6.1032 3.6911 2.1140 46 1 4.5492 -2.4465 -0.5011 47 1 5.6082 -1.0159 -0.5086 48 1 5.4340 -0.8741 1.9609 49 1 4.3751 -2.3048 1.9684 50 1 6.6607 -2.8887 2.3410 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237201084.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:09 Heat of formation + Delta-G solvation = 62.275629 kcal Electronic energy + Delta-G solvation = -29208.006665 eV Core-core repulsion = 25236.890500 eV Total energy + Delta-G solvation = -3971.116165 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.26291 -39.21672 -37.35965 -36.66353 -35.10030 -33.99186 -32.79615 -30.81503 -30.61418 -30.13873 -28.25620 -27.90741 -27.11540 -25.94836 -24.33604 -23.05439 -22.42705 -21.69301 -20.29681 -20.19701 -19.55675 -18.20664 -16.96397 -16.68945 -16.52817 -15.75769 -15.75307 -15.36172 -15.28318 -14.88629 -14.60089 -14.37077 -14.13486 -13.86768 -13.64797 -13.57033 -13.15441 -13.05230 -13.03735 -12.94147 -12.49224 -12.35547 -12.23829 -12.21599 -11.99532 -11.69696 -11.52582 -11.35798 -11.08705 -10.95118 -10.79659 -10.47859 -10.41721 -10.35782 -10.19512 -9.99641 -9.88016 -9.02086 -8.80045 -8.60047 -8.45919 -7.59026 -6.63608 -6.13107 -4.26988 1.83601 1.93953 2.03116 2.27306 2.90793 3.18610 3.27212 3.31510 3.43145 4.00543 4.05556 4.31903 4.34097 4.41598 4.72418 4.80289 4.94799 4.98811 5.06377 5.12661 5.19000 5.30396 5.40580 5.41682 5.50138 5.50540 5.57798 5.64976 5.69892 5.70496 5.82499 5.87492 5.95952 6.00409 6.13840 6.24025 6.28161 6.46450 6.46829 6.77186 6.78538 6.86344 7.02506 7.09527 7.14177 7.21582 7.22815 7.41691 7.63730 7.71517 7.91378 8.04274 8.12157 8.32530 8.81816 9.40313 10.86588 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010959 B = 0.002508 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.367630 B =11161.949464 C =12815.440021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.102 3.898 3 C -0.350 4.350 4 C 0.375 3.625 5 N -0.726 5.726 6 C 0.198 3.802 7 C -0.204 4.204 8 C -0.050 4.050 9 C -0.225 4.225 10 C 0.250 3.750 11 N -0.611 5.611 12 C 0.096 3.904 13 C 0.247 3.753 14 C -0.533 4.533 15 H 0.060 0.940 16 C 0.062 3.938 17 N -0.894 5.894 18 Si 0.896 3.104 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.282 1.282 22 C -0.190 4.190 23 C -0.051 4.051 24 N -0.401 5.401 25 C 0.140 3.860 26 C 0.061 3.939 27 O -0.570 6.570 28 N -0.317 5.317 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.142 0.858 33 H 0.400 0.600 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.038 0.962 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.032 0.968 42 H 0.037 0.963 43 H 0.264 0.736 44 H 0.134 0.866 45 H 0.113 0.887 46 H 0.101 0.899 47 H 0.093 0.907 48 H 0.051 0.949 49 H 0.055 0.945 50 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.769 -8.132 -7.051 19.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.065 4.065 3 C -0.384 4.384 4 C 0.150 3.850 5 N -0.363 5.363 6 C 0.075 3.925 7 C -0.207 4.207 8 C -0.070 4.070 9 C -0.248 4.248 10 C 0.142 3.858 11 N -0.315 5.315 12 C -0.048 4.048 13 C 0.127 3.873 14 C -0.571 4.571 15 H 0.078 0.922 16 C -0.141 4.141 17 N -0.532 5.532 18 Si 0.724 3.276 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.208 1.208 22 C -0.213 4.213 23 C -0.071 4.071 24 N -0.191 5.191 25 C 0.017 3.983 26 C -0.018 4.018 27 O -0.375 6.375 28 N -0.139 5.139 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.160 0.840 33 H 0.235 0.765 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.056 0.944 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.152 0.848 45 H 0.131 0.869 46 H 0.119 0.881 47 H 0.111 0.889 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -16.436 -9.042 -7.517 20.209 hybrid contribution 1.389 -0.024 1.074 1.756 sum -15.047 -9.066 -6.443 18.711 Atomic orbital electron populations 1.20143 0.87084 1.02983 1.02705 1.21981 0.96467 0.90718 0.97363 1.20402 0.89241 0.99593 1.29160 1.18148 0.89625 0.82117 0.95134 1.44434 1.04226 1.04987 1.82672 1.19968 0.94630 0.76739 1.01193 1.19220 0.97492 1.10322 0.93676 1.20574 0.93909 0.95951 0.96559 1.20582 0.97639 1.10106 0.96442 1.18028 0.85167 0.89145 0.93493 1.47197 1.15079 1.61754 1.07506 1.21517 0.98341 0.98799 0.86148 1.19336 0.92431 0.96152 0.79353 1.21581 1.27713 1.01098 1.06745 0.92209 1.24965 0.96661 0.96163 0.96270 1.69930 1.41861 1.26952 1.14495 0.86468 0.79987 0.82533 0.78648 1.19712 1.20867 1.20818 1.20905 0.96386 1.06188 0.97796 1.20708 0.93982 0.95717 0.96651 1.48114 1.05403 1.02278 1.63284 1.21175 0.84511 0.95705 0.96865 1.22462 0.88374 0.94173 0.96799 1.86366 1.46784 1.69783 1.34582 1.77355 0.84781 1.21614 1.30182 0.90726 0.90576 0.91217 0.84000 0.76478 0.91858 0.91941 0.87152 0.86646 0.94364 0.91270 0.92572 0.95038 0.94529 0.92607 0.84845 0.86939 0.88063 0.88895 0.93032 0.92663 0.76357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.44 36.00 0.38 -0.20 16 2 C 0.10 1.23 7.21 -82.44 -0.59 0.64 16 3 C -0.35 -4.27 10.04 -39.75 -0.40 -4.67 16 4 C 0.38 4.70 7.71 -153.40 -1.18 3.52 16 5 N -0.73 -8.39 5.72 -61.63 -0.35 -8.74 16 6 C 0.20 2.23 5.66 -5.20 -0.03 2.20 16 7 C -0.20 -2.76 5.25 -104.59 -0.55 -3.31 16 8 C -0.05 -0.70 9.69 -39.61 -0.38 -1.09 16 9 C -0.22 -3.57 9.21 -39.38 -0.36 -3.93 16 10 C 0.25 4.71 6.55 -83.79 -0.55 4.16 16 11 N -0.61 -12.37 2.99 -181.00 -0.54 -12.91 16 12 C 0.10 1.59 10.19 59.85 0.61 2.20 16 13 C 0.25 5.93 4.91 -5.19 -0.03 5.91 16 14 C -0.53 -14.02 9.39 -34.44 -0.32 -14.35 16 15 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -24.94 13.29 55.43 0.74 -24.20 16 18 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 22 C -0.19 -3.55 9.21 -39.38 -0.36 -3.91 16 23 C -0.05 -0.79 9.69 -39.61 -0.38 -1.17 16 24 N -0.40 -5.07 3.62 -60.46 -0.22 -5.28 16 25 C 0.14 1.50 6.62 -4.05 -0.03 1.47 16 26 C 0.06 0.61 7.37 37.15 0.27 0.89 16 27 O -0.57 -5.61 13.66 -35.23 -0.48 -6.09 16 28 N -0.32 -4.33 12.56 33.65 0.42 -3.91 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.14 1.52 7.83 -52.49 -0.41 1.11 16 33 H 0.40 4.65 7.72 -40.82 -0.32 4.33 16 34 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 36 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 37 H 0.12 1.66 6.14 -52.49 -0.32 1.34 16 38 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 40 H 0.06 0.81 6.20 -51.93 -0.32 0.49 16 41 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 42 H 0.04 0.93 6.20 -51.93 -0.32 0.61 16 43 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.13 2.79 6.14 -52.49 -0.32 2.47 16 45 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 46 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.09 0.93 7.50 -51.93 -0.39 0.54 16 48 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 50 H 0.39 2.23 9.12 45.56 0.42 2.64 16 LS Contribution 415.70 15.07 6.26 6.26 Total: -1.00 -30.73 415.70 -10.22 -40.95 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -7.02 Total: 8.29 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -4.01 Total: -10.09 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.05 Total: -55.05 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.48 Total: -6.09 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -30.73 -10.22 -40.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237201084.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.223 kcal (2) G-P(sol) polarization free energy of solvation -30.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds