Wall clock time and date at job start Wed Apr 1 2020 03:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39771 * 125.84165 * 2 1 4 4 C 1.36168 * 107.81399 * 180.16564 * 3 2 1 5 5 N 1.39212 * 126.21873 * 179.84473 * 4 3 2 6 6 C 1.46495 * 119.99986 * 359.69552 * 5 4 3 7 7 C 1.50698 * 109.46886 * 179.97438 * 6 5 4 8 8 C 1.38288 * 119.92407 * 89.99908 * 7 6 5 9 9 C 1.38111 * 120.07382 * 179.69843 * 8 7 6 10 10 C 1.38906 * 119.92343 * 0.28047 * 9 8 7 11 11 N 1.39676 * 120.07171 * 179.97438 * 10 9 8 12 12 C 1.46499 * 120.00261 * 359.97438 * 11 10 9 13 13 C 1.46500 * 120.00062 * 179.97438 * 11 10 9 14 14 C 1.50702 * 109.47458 * 89.99484 * 13 11 10 15 15 H 1.08007 * 119.99580 * 0.02562 * 14 13 11 16 16 C 1.37875 * 120.00251 * 180.02562 * 14 13 11 17 17 N 1.31513 * 120.00212 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99942 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47202 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47179 * 119.99438 * 18 16 14 21 21 H 1.48500 * 109.46992 * 239.99882 * 18 16 14 22 22 C 1.38908 * 119.85606 * 359.97438 * 10 9 8 23 23 C 1.38112 * 119.92096 * 0.02562 * 22 10 9 24 24 N 1.35249 * 107.55876 * 359.58723 * 4 3 2 25 25 C 1.46498 * 126.04172 * 180.26651 * 24 4 3 26 26 C 1.52995 * 109.47632 * 89.99614 * 25 24 4 27 27 O 1.42895 * 109.47587 * 179.97438 * 26 25 24 28 28 N 1.30844 * 125.83522 * 179.69921 * 2 1 3 29 29 H 1.08999 * 109.47250 * 270.27828 * 1 2 3 30 30 H 1.09000 * 109.47298 * 30.27771 * 1 2 3 31 31 H 1.09003 * 109.47844 * 150.27362 * 1 2 3 32 32 H 1.07997 * 126.08911 * 0.02562 * 3 2 1 33 33 H 0.97000 * 119.99515 * 179.68528 * 5 4 3 34 34 H 1.09001 * 109.47536 * 59.99918 * 6 5 4 35 35 H 1.09003 * 109.47198 * 299.99406 * 6 5 4 36 36 H 1.08002 * 119.96530 * 359.97438 * 8 7 6 37 37 H 1.08000 * 120.03725 * 180.29787 * 9 8 7 38 38 H 1.09003 * 109.46748 * 90.00479 * 12 11 10 39 39 H 1.09000 * 109.47356 * 210.00064 * 12 11 10 40 40 H 1.09000 * 109.47257 * 330.00749 * 12 11 10 41 41 H 1.08994 * 109.47318 * 210.00032 * 13 11 10 42 42 H 1.09001 * 109.47009 * 329.99755 * 13 11 10 43 43 H 0.96992 * 120.00096 * 180.02562 * 17 16 14 44 44 H 1.07998 * 120.04186 * 180.02562 * 22 10 9 45 45 H 1.08002 * 119.96339 * 180.02562 * 23 22 10 46 46 H 1.08999 * 109.47142 * 209.99810 * 25 24 4 47 47 H 1.09005 * 109.47022 * 329.99337 * 25 24 4 48 48 H 1.08999 * 109.47017 * 300.00273 * 26 25 24 49 49 H 1.09005 * 109.47143 * 59.99798 * 26 25 24 50 50 H 0.96701 * 114.00393 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3254 1.1330 0.0000 4 6 3.6202 0.7116 -0.0037 5 7 4.7500 1.5251 -0.0081 6 6 4.6031 2.9826 -0.0156 7 6 5.9664 3.6248 -0.0184 8 6 6.5909 3.9126 -1.2182 9 6 7.8376 4.5068 -1.2244 10 6 8.4667 4.8100 -0.0237 11 7 9.7278 5.4105 -0.0264 12 6 10.3888 5.7207 -1.2964 13 6 10.3896 5.7301 1.2409 14 6 11.2273 4.5569 1.6802 15 1 11.2634 3.6627 1.0755 16 6 11.9475 4.6250 2.8539 17 7 11.9039 5.7140 3.5900 18 14 12.9863 3.1710 3.3980 19 1 12.8662 2.0764 2.4016 20 1 14.4071 3.5900 3.5047 21 1 12.5112 2.6905 4.7203 22 6 7.8389 4.5148 1.1797 23 6 6.5921 3.9206 1.1787 24 7 3.6092 -0.6408 0.0033 25 6 4.7867 -1.5124 0.0079 26 6 5.1966 -1.8083 1.4519 27 8 6.3448 -2.6589 1.4564 28 7 2.2730 -1.0607 0.0056 29 1 -0.3634 0.0050 1.0276 30 1 -0.3634 0.8875 -0.5181 31 1 -0.3635 -0.8924 -0.5096 32 1 1.9904 2.1597 0.0004 33 1 5.6344 1.1267 -0.0059 34 1 4.0555 3.2973 0.8728 35 1 4.0554 3.2880 -0.9072 36 1 6.1013 3.6765 -2.1515 37 1 8.3227 4.7357 -2.1618 38 1 10.1109 6.7255 -1.6147 39 1 11.4696 5.6667 -1.1663 40 1 10.0775 5.0008 -2.0534 41 1 11.0285 6.6030 1.1072 42 1 9.6371 5.9437 2.0000 43 1 12.4109 5.7621 4.4154 44 1 8.3251 4.7496 2.1151 45 1 6.1032 3.6911 2.1140 46 1 4.5492 -2.4465 -0.5011 47 1 5.6082 -1.0159 -0.5086 48 1 5.4340 -0.8741 1.9609 49 1 4.3751 -2.3048 1.9684 50 1 6.6607 -2.8887 2.3410 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237201084.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:08 Heat of formation + Delta-G solvation = 43.510237 kcal Electronic energy + Delta-G solvation = -29208.820394 eV Core-core repulsion = 25236.890500 eV Total energy + Delta-G solvation = -3971.929894 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.15540 -40.51218 -38.13200 -37.91587 -36.27930 -34.92841 -34.66336 -31.93850 -31.87723 -31.02481 -29.69933 -29.20667 -27.93487 -27.18462 -25.86375 -24.09048 -23.67802 -23.04182 -21.42038 -21.10202 -20.67834 -19.02671 -18.65971 -18.16308 -17.62665 -16.97152 -16.62206 -16.56387 -16.32777 -16.15789 -15.80986 -15.54372 -15.37975 -15.04147 -14.77276 -14.74959 -14.36079 -14.15604 -14.00894 -13.90920 -13.78848 -13.38421 -13.29412 -13.19066 -13.08810 -13.04130 -12.97078 -12.69631 -12.57934 -12.48609 -12.29550 -12.06693 -11.75434 -11.50131 -11.35672 -11.16974 -11.05493 -10.66901 -10.51436 -9.72408 -9.67164 -8.51083 -8.39935 -7.87744 -6.39524 0.64319 0.67204 1.12226 1.34316 1.35997 1.37107 1.48065 2.02578 2.31659 2.48341 2.59414 3.04306 3.15396 3.33314 3.52834 3.92457 3.94378 4.02663 4.03375 4.14924 4.19745 4.28074 4.39278 4.47540 4.55954 4.61012 4.61997 4.67514 4.69773 4.77964 4.85005 4.89391 4.93006 4.98291 4.99592 5.07413 5.09448 5.18848 5.25208 5.28643 5.52067 5.57295 5.65570 5.67500 5.85382 5.94420 6.04502 6.13423 6.25703 6.46035 6.65096 6.72025 6.79790 6.88706 7.01235 7.32408 8.81135 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010959 B = 0.002508 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.367630 B =11161.949464 C =12815.440021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.094 3.906 3 C -0.359 4.359 4 C 0.367 3.633 5 N -0.723 5.723 6 C 0.203 3.797 7 C -0.183 4.183 8 C -0.043 4.043 9 C -0.219 4.219 10 C 0.221 3.779 11 N -0.629 5.629 12 C 0.096 3.904 13 C 0.265 3.735 14 C -0.539 4.539 15 H 0.049 0.951 16 C 0.013 3.987 17 N -0.926 5.926 18 Si 0.960 3.040 19 H -0.270 1.270 20 H -0.275 1.275 21 H -0.278 1.278 22 C -0.218 4.218 23 C -0.050 4.050 24 N -0.406 5.406 25 C 0.137 3.863 26 C 0.071 3.929 27 O -0.582 6.582 28 N -0.347 5.347 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.157 0.843 33 H 0.400 0.600 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.144 0.856 37 H 0.134 0.866 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.010 0.990 42 H 0.013 0.987 43 H 0.267 0.733 44 H 0.096 0.904 45 H 0.125 0.875 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.047 0.953 49 H 0.052 0.948 50 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.471 -9.316 -8.543 22.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.393 4.393 4 C 0.141 3.859 5 N -0.360 5.360 6 C 0.081 3.919 7 C -0.186 4.186 8 C -0.062 4.062 9 C -0.242 4.242 10 C 0.115 3.885 11 N -0.336 5.336 12 C -0.047 4.047 13 C 0.143 3.857 14 C -0.578 4.578 15 H 0.067 0.933 16 C -0.186 4.186 17 N -0.566 5.566 18 Si 0.785 3.215 19 H -0.195 1.195 20 H -0.201 1.201 21 H -0.203 1.203 22 C -0.241 4.241 23 C -0.069 4.069 24 N -0.196 5.196 25 C 0.015 3.985 26 C -0.009 4.009 27 O -0.390 6.390 28 N -0.170 5.170 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.174 0.826 33 H 0.235 0.765 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.162 0.838 37 H 0.152 0.848 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.028 0.972 42 H 0.031 0.969 43 H 0.076 0.924 44 H 0.114 0.886 45 H 0.143 0.857 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.065 0.935 49 H 0.070 0.930 50 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -18.165 -10.242 -9.022 22.721 hybrid contribution 1.776 0.305 1.512 2.352 sum -16.389 -9.936 -7.510 20.585 Atomic orbital electron populations 1.20270 0.84709 1.04038 1.03722 1.22598 0.98095 0.90302 0.96220 1.20696 0.89163 1.00380 1.29018 1.18292 0.89968 0.82252 0.95341 1.44305 1.04031 1.04901 1.82776 1.19968 0.93037 0.76385 1.02545 1.19436 0.98032 1.08391 0.92774 1.20951 0.92993 0.94320 0.97976 1.20815 0.98199 1.09354 0.95836 1.18304 0.85012 0.90488 0.94680 1.47029 1.16079 1.63465 1.07003 1.21634 0.97449 1.00435 0.85174 1.18803 0.91276 0.94580 0.81028 1.21775 1.27932 1.01284 1.06773 0.93263 1.25761 0.97852 0.98672 0.96365 1.70033 1.42824 1.28742 1.14962 0.85477 0.78528 0.79336 0.78159 1.19471 1.20088 1.20320 1.20785 0.98075 1.08627 0.96626 1.20846 0.92832 0.94955 0.98285 1.48232 1.05506 1.02551 1.63339 1.21265 0.84262 0.95633 0.97342 1.22304 0.88332 0.93922 0.96295 1.86327 1.46669 1.69698 1.36347 1.77324 0.85423 1.22785 1.31515 0.89636 0.88751 0.90925 0.82566 0.76530 0.91103 0.90087 0.83800 0.84829 0.92752 0.92524 0.90184 0.97231 0.96906 0.92386 0.88556 0.85719 0.88109 0.88291 0.93480 0.92970 0.74419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.44 71.23 0.74 -0.22 16 2 C 0.09 2.10 7.21 43.08 0.31 2.41 16 3 C -0.36 -7.85 10.04 22.16 0.22 -7.63 16 4 C 0.37 8.40 7.71 131.42 1.01 9.41 16 5 N -0.72 -14.76 5.72 -348.91 -2.00 -16.76 16 6 C 0.20 3.88 5.66 85.63 0.48 4.36 16 7 C -0.18 -4.47 5.25 -19.84 -0.10 -4.57 16 8 C -0.04 -1.05 9.69 22.25 0.22 -0.84 16 9 C -0.22 -6.50 9.21 22.40 0.21 -6.29 16 10 C 0.22 8.36 6.55 38.21 0.25 8.61 16 11 N -0.63 -26.18 2.99 -726.57 -2.17 -28.35 16 12 C 0.10 3.15 10.19 127.77 1.30 4.45 16 13 C 0.26 13.46 4.91 85.63 0.42 13.88 16 14 C -0.54 -29.46 9.39 25.60 0.24 -29.22 16 15 H 0.05 2.74 7.81 -2.91 -0.02 2.71 16 16 C 0.01 0.71 5.46 84.65 0.46 1.17 16 17 N -0.93 -53.33 13.29 21.45 0.28 -53.05 16 18 Si 0.96 43.22 29.54 68.60 2.03 45.25 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 20 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 22 C -0.22 -8.43 9.21 22.40 0.21 -8.22 16 23 C -0.05 -1.50 9.69 22.25 0.22 -1.28 16 24 N -0.41 -9.70 3.62 -345.19 -1.25 -10.95 16 25 C 0.14 2.78 6.62 86.38 0.57 3.36 16 26 C 0.07 1.35 7.37 71.98 0.53 1.88 16 27 O -0.58 -10.80 13.66 -148.98 -2.03 -12.83 16 28 N -0.35 -9.07 12.56 -47.45 -0.60 -9.66 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.16 2.84 7.83 -2.91 -0.02 2.82 16 33 H 0.40 8.34 7.72 -92.71 -0.72 7.63 16 34 H 0.07 1.30 8.09 -2.39 -0.02 1.28 16 35 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16 36 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 37 H 0.13 3.43 6.14 -2.91 -0.02 3.41 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 39 H 0.06 1.96 8.07 -2.39 -0.02 1.94 16 40 H 0.08 2.19 6.20 -2.39 -0.01 2.18 16 41 H 0.01 0.52 8.07 -2.39 -0.02 0.50 16 42 H 0.01 0.71 6.20 -2.39 -0.01 0.70 16 43 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 44 H 0.10 4.38 6.14 -2.91 -0.02 4.37 16 45 H 0.12 3.36 8.06 -2.91 -0.02 3.34 16 46 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.10 1.85 7.50 -2.38 -0.02 1.83 16 48 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 50 H 0.40 4.16 9.12 -74.06 -0.68 3.49 16 Total: -1.00 -68.14 415.70 1.12 -67.02 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: -0.43 Total: 28.08 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: 7.29 Total: -8.74 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -5.73 Total: -118.78 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -2.03 Total: -12.83 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -68.14 1.12 -67.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237201084.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.528 kcal (2) G-P(sol) polarization free energy of solvation -68.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds