Wall clock time and date at job start Wed Apr 1 2020 03:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30841 * 125.90113 * 2 1 4 4 N 1.40091 * 108.20334 * 180.25855 * 3 2 1 5 5 C 1.46494 * 126.03243 * 179.74177 * 4 3 2 6 6 C 1.50702 * 109.47382 * 269.97713 * 5 4 3 7 7 H 1.08004 * 119.99628 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00077 * 180.02562 * 6 5 4 9 9 N 1.31508 * 120.00457 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99899 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47107 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47529 * 119.99868 * 10 8 6 13 13 H 1.48503 * 109.47301 * 240.00164 * 10 8 6 14 14 C 1.34945 * 107.92641 * 359.72330 * 4 3 2 15 15 C 1.50699 * 126.12522 * 180.02562 * 14 4 3 16 16 C 1.35320 * 107.74359 * 359.97438 * 14 4 3 17 17 C 1.50701 * 126.03550 * 179.97438 * 16 14 4 18 18 C 1.52997 * 109.47212 * 89.99805 * 17 16 14 19 19 C 1.50697 * 109.47466 * 179.97438 * 18 17 16 20 20 O 1.21282 * 120.00011 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00369 * 180.02562 * 19 18 17 22 22 C 1.46505 * 120.00115 * 180.02562 * 21 19 18 23 23 C 1.47198 * 115.54697 * 34.32952 * 22 21 19 24 24 N 8.02594 * 89.86049 * 175.07952 * 2 1 3 25 25 C 1.52995 * 117.49469 * 248.62090 * 22 21 19 26 26 C 1.53002 * 117.49595 * 179.97438 * 22 21 19 27 27 C 1.52998 * 117.49556 * 214.97890 * 26 22 21 28 28 C 1.53001 * 117.50175 * 359.97438 * 26 22 21 29 29 H 1.08997 * 109.46948 * 270.20982 * 1 2 3 30 30 H 1.08997 * 109.46782 * 30.20449 * 1 2 3 31 31 H 1.08993 * 109.47399 * 150.20471 * 1 2 3 32 32 H 1.08997 * 109.47670 * 29.97655 * 5 4 3 33 33 H 1.09001 * 109.47011 * 149.97772 * 5 4 3 34 34 H 0.97000 * 120.00722 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.46844 * 269.97419 * 15 14 4 36 36 H 1.08999 * 109.47222 * 29.97652 * 15 14 4 37 37 H 1.08998 * 109.46726 * 149.97932 * 15 14 4 38 38 H 1.09002 * 109.47060 * 209.99860 * 17 16 14 39 39 H 1.09001 * 109.47380 * 329.99947 * 17 16 14 40 40 H 1.09002 * 109.47153 * 299.99998 * 18 17 16 41 41 H 1.08998 * 109.47533 * 59.99628 * 18 17 16 42 42 H 0.97003 * 119.99640 * 0.02562 * 21 19 18 43 43 H 1.09003 * 117.50459 * 0.02562 * 25 22 21 44 44 H 1.09000 * 117.49745 * 145.02218 * 25 22 21 45 45 H 1.08997 * 109.47247 * 60.00414 * 27 26 22 46 46 H 1.08997 * 109.47066 * 180.02562 * 27 26 22 47 47 H 1.09004 * 109.46796 * 299.99813 * 27 26 22 48 48 H 1.09000 * 109.47263 * 59.99312 * 28 26 22 49 49 H 1.08995 * 109.47380 * 180.02562 * 28 26 22 50 50 H 1.09006 * 109.46440 * 299.99790 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0060 5 6 4.7899 1.5006 -0.0134 6 6 5.1881 1.7951 -1.4367 7 1 4.6181 1.3786 -2.2540 8 6 6.2801 2.5960 -1.6954 9 7 6.9745 3.1028 -0.7002 10 14 6.7733 2.9615 -3.4596 11 1 5.8373 2.2768 -4.3872 12 1 6.7207 4.4268 -3.6950 13 1 8.1543 2.4710 -3.6994 14 6 3.6142 -0.7155 -0.0034 15 6 4.8350 -1.5990 -0.0074 16 6 2.3271 -1.1330 0.0046 17 6 1.8598 -2.5657 0.0095 18 6 1.7100 -3.0484 1.4535 19 6 1.2421 -4.4809 1.4585 20 8 1.0481 -5.0591 0.4101 21 7 1.0393 -5.1196 2.6278 22 6 0.5850 -6.5125 2.6325 23 6 1.0945 -7.3501 1.5345 24 7 1.4875 -7.9963 0.6884 25 6 -0.8329 -6.7913 3.1352 26 6 0.3737 -7.1819 3.9920 27 6 0.7070 -8.6708 4.1056 28 6 0.6535 -6.3458 5.2424 29 1 -0.3633 0.0038 1.0276 30 1 -0.3633 0.8881 -0.5170 31 1 -0.3634 -0.8917 -0.5106 32 1 4.5589 2.4341 0.4997 33 1 5.6118 0.9990 0.4975 34 1 7.7430 3.6660 -0.8821 35 1 5.1242 -1.8144 -1.0360 36 1 5.6537 -1.0900 0.5013 37 1 4.6100 -2.5318 0.5097 38 1 0.8981 -2.6360 -0.4988 39 1 2.5903 -3.1879 -0.5076 40 1 2.6717 -2.9782 1.9618 41 1 0.9796 -2.4263 1.9707 42 1 1.1941 -4.6571 3.4663 43 1 -1.4279 -5.9384 3.4620 44 1 -1.3889 -7.5951 2.6527 45 1 1.7593 -8.8267 3.8683 46 1 0.5092 -9.0109 5.1221 47 1 0.0894 -9.2357 3.4072 48 1 0.0030 -5.4712 5.2478 49 1 0.4625 -6.9467 6.1315 50 1 1.6950 -6.0240 5.2386 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362174566.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:43 Heat of formation + Delta-G solvation = 70.008700 kcal Electronic energy + Delta-G solvation = -29392.706420 eV Core-core repulsion = 25421.925585 eV Total energy + Delta-G solvation = -3970.780834 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.84625 -40.52696 -38.76660 -36.07208 -34.42674 -33.84119 -33.37202 -32.50166 -30.46778 -29.66745 -28.97858 -28.16308 -26.86917 -25.89164 -24.60917 -23.50979 -22.25952 -21.11081 -20.04516 -18.84743 -18.67460 -18.08380 -17.29755 -16.71383 -15.95560 -15.68725 -15.29830 -14.76959 -14.57655 -14.50085 -14.40617 -14.19943 -13.91692 -13.62046 -13.27662 -13.11041 -12.99344 -12.93063 -12.90546 -12.77511 -12.61903 -12.50716 -12.37472 -12.33265 -12.15676 -11.85021 -11.81124 -11.67950 -11.36018 -11.30694 -11.25451 -10.96606 -10.83200 -10.75589 -10.62515 -10.27495 -9.96498 -9.72258 -9.62453 -9.34044 -8.66500 -8.19961 -7.49972 -6.27933 -4.35057 2.09476 2.23502 2.47936 2.74406 2.88029 3.19220 3.27222 3.30983 3.33205 3.37566 3.41230 3.59995 4.00657 4.21720 4.28728 4.35800 4.43977 4.74124 5.03540 5.05797 5.13038 5.13872 5.18895 5.20324 5.27531 5.29049 5.31257 5.33296 5.37994 5.54571 5.62931 5.66828 5.69730 5.79512 5.91867 5.93496 5.95216 6.00365 6.04056 6.22133 6.35638 6.42524 6.52670 6.83402 7.01272 7.04954 7.10005 7.40238 7.49623 7.65296 7.86891 7.94772 8.03852 8.65265 8.74315 9.31586 10.79702 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018709 B = 0.002050 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.233312 B =13653.977268 C =13966.209264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.051 3.949 3 N -0.297 5.297 4 N -0.324 5.324 5 C 0.257 3.743 6 C -0.534 4.534 7 H 0.064 0.936 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.281 1.281 14 C 0.095 3.905 15 C -0.086 4.086 16 C -0.270 4.270 17 C -0.011 4.011 18 C -0.129 4.129 19 C 0.513 3.487 20 O -0.521 6.521 21 N -0.699 5.699 22 C 0.190 3.810 23 C 0.245 3.755 24 N -0.402 5.402 25 C -0.149 4.149 26 C -0.094 4.094 27 C -0.124 4.124 28 C -0.126 4.126 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.267 0.733 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.413 0.587 43 H 0.118 0.882 44 H 0.110 0.890 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.063 0.937 48 H 0.068 0.932 49 H 0.075 0.925 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.141 -19.402 15.693 28.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.113 4.113 3 N -0.121 5.121 4 N -0.104 5.104 5 C 0.139 3.861 6 C -0.573 4.573 7 H 0.082 0.918 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.206 1.206 14 C -0.037 4.037 15 C -0.145 4.145 16 C -0.282 4.282 17 C -0.050 4.050 18 C -0.170 4.170 19 C 0.301 3.699 20 O -0.395 6.395 21 N -0.354 5.354 22 C 0.098 3.902 23 C -0.074 4.074 24 N -0.079 5.079 25 C -0.189 4.189 26 C -0.097 4.097 27 C -0.181 4.181 28 C -0.183 4.183 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.250 0.750 43 H 0.136 0.864 44 H 0.128 0.872 45 H 0.084 0.916 46 H 0.093 0.907 47 H 0.082 0.918 48 H 0.087 0.913 49 H 0.094 0.906 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.313 -19.215 13.655 27.072 hybrid contribution 0.429 0.150 -0.300 0.545 sum -12.884 -19.064 13.355 26.604 Atomic orbital electron populations 1.20025 0.88039 1.02454 1.01801 1.21942 0.96110 0.90743 1.02530 1.77281 0.87487 1.22656 1.24642 1.49247 1.05793 1.04193 1.51157 1.19660 0.77973 0.89541 0.98944 1.21343 1.12956 1.31647 0.91346 0.91758 1.24926 0.95707 0.95020 0.98168 1.69920 1.18896 1.33074 1.31103 0.86307 0.78403 0.78294 0.83740 1.19562 1.20612 1.20637 1.20778 0.96114 0.85692 1.01116 1.20352 0.93784 0.97107 1.03222 1.19312 0.91350 0.94970 1.22547 1.19396 1.01743 0.91015 0.92862 1.21756 1.03221 0.90215 1.01768 1.21326 0.76132 0.89520 0.82906 1.90754 1.49753 1.67755 1.31242 1.45488 1.70321 1.09553 1.10056 1.16906 0.99717 0.82337 0.91246 1.26969 0.94085 0.93380 0.92922 1.81145 1.07297 1.10783 1.08641 1.23975 0.89881 1.04312 1.00748 1.22160 1.00796 0.96782 0.89914 1.21479 1.02355 0.91154 1.03107 1.21466 1.02550 0.99416 0.94849 0.91576 0.91574 0.91241 0.93052 0.93095 0.92308 0.90444 0.90896 0.91137 0.91155 0.91410 0.88720 0.88509 0.74976 0.86391 0.87178 0.91592 0.90653 0.91844 0.91328 0.90583 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.26 36.01 0.37 -0.52 16 2 C 0.05 0.95 7.22 -82.41 -0.59 0.35 16 3 N -0.30 -6.72 12.58 33.67 0.42 -6.30 16 4 N -0.32 -7.48 3.60 -58.32 -0.21 -7.69 16 5 C 0.26 6.53 6.00 -5.20 -0.03 6.50 16 6 C -0.53 -14.78 9.39 -34.44 -0.32 -15.10 16 7 H 0.06 1.85 7.81 -52.48 -0.41 1.44 16 8 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -25.08 13.29 55.43 0.74 -24.35 16 10 Si 0.91 21.29 29.54 -169.99 -5.02 16.27 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 C 0.09 1.85 6.93 -82.26 -0.57 1.28 16 15 C -0.09 -1.41 9.72 36.01 0.35 -1.06 16 16 C -0.27 -4.70 5.35 -105.05 -0.56 -5.26 16 17 C -0.01 -0.16 4.41 -27.88 -0.12 -0.28 16 18 C -0.13 -1.34 5.68 -27.89 -0.16 -1.49 16 19 C 0.51 5.61 7.67 -10.99 -0.08 5.53 16 20 O -0.52 -8.00 14.15 5.56 0.08 -7.92 16 21 N -0.70 -5.15 5.50 -50.23 -0.28 -5.42 16 22 C 0.19 1.47 2.84 -134.61 -0.38 1.09 16 23 C 0.25 2.94 11.83 -20.80 -0.25 2.70 16 24 N -0.40 -5.97 18.53 42.11 0.78 -5.19 16 25 C -0.15 -0.75 9.43 -26.71 -0.25 -1.00 16 26 C -0.09 -0.42 2.70 -154.48 -0.42 -0.84 16 27 C -0.12 -0.55 8.86 37.16 0.33 -0.22 16 28 C -0.13 -0.29 8.63 37.16 0.32 0.03 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.84 7.25 -51.93 -0.38 0.46 16 32 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.05 1.28 7.05 -51.93 -0.37 0.91 16 34 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.07 1.21 7.08 -51.93 -0.37 0.85 16 37 H 0.07 0.93 7.78 -51.93 -0.40 0.52 16 38 H 0.07 0.99 7.20 -51.93 -0.37 0.62 16 39 H 0.07 1.02 7.73 -51.93 -0.40 0.61 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.41 1.69 7.40 -40.82 -0.30 1.39 16 43 H 0.12 0.41 8.05 -51.93 -0.42 -0.01 16 44 H 0.11 0.53 8.05 -51.93 -0.42 0.11 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.21 7.92 -51.93 -0.41 -0.21 16 47 H 0.06 0.31 7.90 -51.93 -0.41 -0.10 16 48 H 0.07 0.10 7.81 -51.93 -0.41 -0.31 16 49 H 0.08 0.12 7.92 -51.93 -0.41 -0.29 16 50 H 0.07 0.16 8.05 -51.93 -0.42 -0.26 16 LS Contribution 421.17 15.07 6.35 6.35 Total: -1.00 -35.48 421.17 -7.60 -43.08 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -7.99 Total: -2.22 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -2.47 Total: -6.61 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 1.45 Total: -48.95 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.08 Total: -7.92 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -35.48 -7.60 -43.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362174566.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.093 kcal (2) G-P(sol) polarization free energy of solvation -35.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds