Wall clock time and date at job start Wed Apr 1 2020 03:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30835 * 125.89786 * 2 1 4 4 N 1.40083 * 108.20618 * 180.25602 * 3 2 1 5 5 C 1.46495 * 126.03868 * 179.73686 * 4 3 2 6 6 C 1.53003 * 109.47718 * 269.98174 * 5 4 3 7 7 C 1.47201 * 109.47298 * 180.02562 * 6 5 4 8 8 N 6.84541 * 147.75653 * 336.23922 * 2 1 3 9 9 C 1.34953 * 107.92161 * 359.72626 * 4 3 2 10 10 C 1.50704 * 126.12402 * 179.97438 * 9 4 3 11 11 C 1.35309 * 107.74506 * 359.97438 * 9 4 3 12 12 C 1.50702 * 126.03680 * 180.02562 * 11 9 4 13 13 C 1.53004 * 109.47283 * 89.99778 * 12 11 9 14 14 C 1.50693 * 109.47428 * 180.02562 * 13 12 11 15 15 O 1.21280 * 120.00172 * 5.63280 * 14 13 12 16 16 N 1.34781 * 120.00227 * 185.63807 * 14 13 12 17 17 C 1.46492 * 120.00065 * 185.07332 * 16 14 13 18 18 C 1.53000 * 109.47112 * 183.82356 * 17 16 14 19 19 C 1.50703 * 115.55331 * 294.93683 * 18 17 16 20 20 H 1.07994 * 119.99679 * 114.84102 * 19 18 17 21 21 C 1.37883 * 119.99414 * 294.56871 * 19 18 17 22 22 N 1.31509 * 119.99487 * 174.42446 * 21 19 18 23 23 Si 1.86795 * 120.00216 * 354.42653 * 21 19 18 24 24 H 1.48502 * 109.47018 * 93.11405 * 23 21 19 25 25 H 1.48504 * 109.46991 * 213.11178 * 23 21 19 26 26 H 1.48499 * 109.47148 * 333.11176 * 23 21 19 27 27 C 1.53005 * 117.49613 * 80.60308 * 18 17 16 28 28 C 1.53001 * 117.49959 * 149.26552 * 18 17 16 29 29 H 1.09003 * 109.46845 * 270.20689 * 1 2 3 30 30 H 1.08998 * 109.47056 * 30.20613 * 1 2 3 31 31 H 1.08996 * 109.46848 * 150.20457 * 1 2 3 32 32 H 1.09001 * 109.46901 * 29.98934 * 5 4 3 33 33 H 1.09009 * 109.47044 * 149.98150 * 5 4 3 34 34 H 1.08996 * 109.46860 * 300.00451 * 6 5 4 35 35 H 1.09001 * 109.46611 * 59.99785 * 6 5 4 36 36 H 1.09002 * 109.46939 * 270.02536 * 10 9 4 37 37 H 1.08996 * 109.46930 * 30.02349 * 10 9 4 38 38 H 1.08998 * 109.46685 * 150.02322 * 10 9 4 39 39 H 1.08998 * 109.47567 * 329.99830 * 12 11 9 40 40 H 1.08998 * 109.47431 * 209.99666 * 12 11 9 41 41 H 1.09007 * 109.46862 * 59.99727 * 13 12 11 42 42 H 1.08998 * 109.46796 * 300.00278 * 13 12 11 43 43 H 0.97007 * 119.99650 * 5.06716 * 16 14 13 44 44 H 1.09003 * 109.47678 * 63.82648 * 17 16 14 45 45 H 1.09001 * 109.47507 * 303.82093 * 17 16 14 46 46 H 0.96998 * 120.00070 * 180.02562 * 22 21 19 47 47 H 1.09002 * 117.49847 * 215.00206 * 27 18 17 48 48 H 1.08997 * 117.49813 * 0.02562 * 27 18 17 49 49 H 1.09003 * 117.49800 * 359.97378 * 28 18 17 50 50 H 1.08995 * 117.50224 * 144.97624 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 -0.0059 5 6 4.7899 1.5008 -0.0134 6 6 5.1942 1.7997 -1.4584 7 6 6.3813 2.6700 -1.4658 8 7 7.2969 3.3426 -1.4715 9 6 3.6142 -0.7154 -0.0034 10 6 4.8351 -1.5989 -0.0084 11 6 2.3272 -1.1329 0.0045 12 6 1.8600 -2.5657 0.0104 13 6 1.7097 -3.0472 1.4549 14 6 1.2431 -4.4801 1.4609 15 8 1.1478 -5.0912 0.4176 16 7 0.9315 -5.0826 2.6255 17 6 0.5853 -6.5059 2.6443 18 6 0.1844 -6.9146 4.0631 19 6 1.2783 -6.8339 5.0965 20 1 1.2007 -6.1291 5.9110 21 6 2.3755 -7.6639 5.0050 22 7 3.3804 -7.5199 5.8410 23 14 2.4346 -8.9929 3.6937 24 1 3.1248 -8.4683 2.4880 25 1 3.1749 -10.1700 4.2149 26 1 1.0512 -9.3970 3.3357 27 6 -1.2405 -6.5894 4.5159 28 6 -0.8454 -8.0365 4.2107 29 1 -0.3633 0.0037 1.0277 30 1 -0.3633 0.8881 -0.5170 31 1 -0.3633 -0.8918 -0.5106 32 1 4.5588 2.4342 0.4998 33 1 5.6118 0.9992 0.4975 34 1 5.4253 0.8662 -1.9715 35 1 4.3723 2.3013 -1.9693 36 1 5.1240 -1.8135 -1.0373 37 1 5.6538 -1.0901 0.5003 38 1 4.6103 -2.5321 0.5081 39 1 2.5906 -3.1883 -0.5059 40 1 0.8985 -2.6365 -0.4980 41 1 0.9790 -2.4246 1.9713 42 1 2.6712 -2.9765 1.9634 43 1 0.9367 -4.5737 3.4514 44 1 1.4466 -7.0937 2.3266 45 1 -0.2480 -6.6862 1.9651 46 1 4.1525 -8.1035 5.7765 47 1 -1.3866 -6.3171 5.5612 48 1 -1.8923 -6.0846 3.8029 49 1 -1.2376 -8.4831 3.2970 50 1 -0.7315 -8.7164 5.0550 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431154536.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:34 Heat of formation + Delta-G solvation = 70.745771 kcal Electronic energy + Delta-G solvation = -29207.172658 eV Core-core repulsion = 25236.423786 eV Total energy + Delta-G solvation = -3970.748873 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.67037 -39.20984 -37.54681 -37.05824 -35.36639 -33.82599 -33.36434 -32.44675 -32.20989 -30.47172 -28.36360 -27.64178 -26.59852 -25.36192 -24.38067 -22.94540 -21.64303 -19.88107 -19.71724 -19.53726 -19.09774 -18.35766 -16.98401 -16.64026 -16.21303 -15.77191 -15.63130 -15.43907 -15.01794 -14.90250 -14.32016 -14.13467 -14.00243 -13.73412 -13.53270 -13.37385 -13.24085 -13.08782 -12.95638 -12.82075 -12.76955 -12.68061 -12.44156 -12.26870 -12.12859 -12.11360 -11.85018 -11.79349 -11.64754 -11.09492 -10.98991 -10.73437 -10.61433 -10.49382 -10.28303 -9.65976 -9.37346 -9.27529 -9.16190 -8.80744 -8.54303 -8.38986 -8.27157 -6.20407 -4.23123 1.55403 1.94672 2.21787 2.33340 2.55427 3.14443 3.26230 3.36321 3.42544 3.42996 3.81375 4.02041 4.19313 4.36351 4.39800 4.53683 4.60087 4.78712 4.84332 4.97995 5.07767 5.09005 5.14930 5.16866 5.23065 5.26121 5.31969 5.49244 5.58228 5.63351 5.65222 5.69249 5.77850 5.82656 5.95809 5.99567 6.11833 6.22237 6.24198 6.28016 6.43320 6.51244 6.56172 6.69443 6.78812 6.93509 6.96858 7.05503 7.17093 7.55076 7.64719 8.20318 8.38473 8.79136 8.81789 9.43273 10.90534 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.002200 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.447587 B =12726.973961 C =13767.724653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.088 3.912 3 N -0.298 5.298 4 N -0.378 5.378 5 C 0.142 3.858 6 C -0.042 4.042 7 C 0.208 3.792 8 N -0.423 5.423 9 C 0.091 3.909 10 C -0.099 4.099 11 C -0.226 4.226 12 C -0.023 4.023 13 C -0.134 4.134 14 C 0.505 3.495 15 O -0.561 6.561 16 N -0.703 5.703 17 C 0.154 3.846 18 C -0.019 4.019 19 C -0.489 4.489 20 H 0.078 0.922 21 C 0.083 3.917 22 N -0.893 5.893 23 Si 0.866 3.134 24 H -0.278 1.278 25 H -0.292 1.292 26 H -0.249 1.249 27 C -0.180 4.180 28 C -0.185 4.185 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.406 0.594 44 H 0.055 0.945 45 H 0.048 0.952 46 H 0.265 0.735 47 H 0.085 0.915 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.062 15.760 -12.834 20.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.079 4.079 3 N -0.119 5.119 4 N -0.160 5.160 5 C 0.019 3.981 6 C -0.084 4.084 7 C -0.111 4.111 8 N -0.100 5.100 9 C -0.035 4.035 10 C -0.157 4.157 11 C -0.236 4.236 12 C -0.061 4.061 13 C -0.174 4.174 14 C 0.291 3.709 15 O -0.441 6.441 16 N -0.352 5.352 17 C 0.030 3.970 18 C -0.020 4.020 19 C -0.526 4.526 20 H 0.096 0.904 21 C -0.121 4.121 22 N -0.529 5.529 23 Si 0.694 3.306 24 H -0.204 1.204 25 H -0.219 1.219 26 H -0.172 1.172 27 C -0.217 4.217 28 C -0.224 4.224 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.241 0.759 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.075 0.925 47 H 0.104 0.896 48 H 0.091 0.909 49 H 0.089 0.911 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.610 17.609 -13.496 22.194 hybrid contribution -0.044 -1.637 -0.119 1.642 sum 0.566 15.971 -13.615 20.995 Atomic orbital electron populations 1.20224 0.86680 1.03346 1.03216 1.22243 0.96837 0.90249 0.98572 1.77322 0.85906 1.22409 1.26254 1.48177 1.04962 1.03783 1.59118 1.21397 0.85162 0.96188 0.95393 1.19640 0.90929 0.98371 0.99417 1.28753 0.94282 0.93994 0.94088 1.81300 1.11324 1.09958 1.07393 1.20882 0.97060 0.84211 1.01308 1.20549 0.92760 0.98809 1.03562 1.19774 0.91047 0.96402 1.16424 1.19583 1.02316 0.89167 0.95076 1.21642 1.03276 0.93267 0.99216 1.20667 0.77475 0.88994 0.83791 1.90644 1.54462 1.67084 1.31921 1.45897 1.68232 1.11571 1.09544 1.21048 0.98675 0.80626 0.96634 1.19636 0.89796 0.99424 0.93177 1.20227 1.01363 1.21702 1.09270 0.90433 1.24918 0.94880 0.96862 0.95431 1.69890 1.06924 1.38587 1.37530 0.87031 0.79703 0.81893 0.82017 1.20394 1.21873 1.17212 1.22798 0.99295 0.98784 1.00831 1.23031 1.06232 0.91515 1.01597 0.90327 0.91037 0.90127 0.87771 0.88004 0.86675 0.86312 0.89971 0.91079 0.89036 0.90604 0.90590 0.89355 0.89054 0.75864 0.92648 0.93334 0.92479 0.89648 0.90888 0.91122 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.26 36.01 0.37 -0.25 16 2 C 0.09 0.91 7.22 -82.40 -0.59 0.32 16 3 N -0.30 -3.20 12.58 33.67 0.42 -2.78 16 4 N -0.38 -3.19 3.61 -57.14 -0.21 -3.40 16 5 C 0.14 0.70 6.20 -4.04 -0.03 0.67 16 6 C -0.04 -0.15 6.03 -29.52 -0.18 -0.33 16 7 C 0.21 1.31 15.43 -20.76 -0.32 0.99 16 8 N -0.42 -4.13 18.54 42.15 0.78 -3.35 16 9 C 0.09 0.81 6.93 -82.26 -0.57 0.24 16 10 C -0.10 -0.65 9.72 36.01 0.35 -0.30 16 11 C -0.23 -2.35 5.35 -105.06 -0.56 -2.91 16 12 C -0.02 -0.25 4.43 -27.88 -0.12 -0.38 16 13 C -0.13 -1.64 5.68 -27.88 -0.16 -1.80 16 14 C 0.50 8.48 7.82 -10.99 -0.09 8.39 16 15 O -0.56 -11.23 15.98 5.56 0.09 -11.14 16 16 N -0.70 -12.68 5.48 -60.30 -0.33 -13.01 16 17 C 0.15 3.18 5.15 -4.05 -0.02 3.16 16 18 C -0.02 -0.41 0.84 -155.66 -0.13 -0.54 16 19 C -0.49 -12.45 9.16 -34.44 -0.32 -12.77 16 20 H 0.08 2.15 8.06 -52.49 -0.42 1.72 16 21 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 22 N -0.89 -25.70 13.96 55.43 0.77 -24.93 16 23 Si 0.87 20.76 24.97 -169.99 -4.25 16.51 16 24 H -0.28 -6.75 7.02 56.52 0.40 -6.35 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 H -0.25 -5.61 5.73 56.52 0.32 -5.29 16 27 C -0.18 -3.34 9.96 -26.69 -0.27 -3.61 16 28 C -0.19 -3.70 8.03 -26.69 -0.21 -3.91 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.61 7.25 -51.93 -0.38 0.23 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.10 0.35 7.05 -51.92 -0.37 -0.02 16 34 H 0.12 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.35 7.08 -51.93 -0.37 -0.02 16 38 H 0.09 0.70 7.77 -51.93 -0.40 0.30 16 39 H 0.08 0.91 7.67 -51.93 -0.40 0.51 16 40 H 0.08 0.88 7.25 -51.93 -0.38 0.50 16 41 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 42 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.41 6.85 8.34 -40.82 -0.34 6.51 16 44 H 0.06 1.27 5.05 -51.93 -0.26 1.01 16 45 H 0.05 0.97 8.07 -51.93 -0.42 0.55 16 46 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 48 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 49 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 50 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 LS Contribution 418.24 15.07 6.30 6.30 Total: -1.00 -33.85 418.24 -7.38 -41.23 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -8.02 Total: 5.45 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -2.94 Total: -10.89 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 1.44 Total: -47.46 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.25 Total: 16.51 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.85 -7.38 -41.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431154536.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.974 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds