Wall clock time and date at job start Wed Apr 1 2020 03:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30835 * 125.89786 * 2 1 4 4 N 1.40083 * 108.20618 * 180.25602 * 3 2 1 5 5 C 1.46495 * 126.03868 * 179.73686 * 4 3 2 6 6 C 1.53003 * 109.47718 * 269.98174 * 5 4 3 7 7 C 1.47201 * 109.47298 * 180.02562 * 6 5 4 8 8 N 6.84541 * 147.75653 * 336.23922 * 2 1 3 9 9 C 1.34953 * 107.92161 * 359.72626 * 4 3 2 10 10 C 1.50704 * 126.12402 * 179.97438 * 9 4 3 11 11 C 1.35309 * 107.74506 * 359.97438 * 9 4 3 12 12 C 1.50702 * 126.03680 * 180.02562 * 11 9 4 13 13 C 1.53004 * 109.47283 * 89.99778 * 12 11 9 14 14 C 1.50693 * 109.47428 * 180.02562 * 13 12 11 15 15 O 1.21280 * 120.00172 * 5.63280 * 14 13 12 16 16 N 1.34781 * 120.00227 * 185.63807 * 14 13 12 17 17 C 1.46492 * 120.00065 * 185.07332 * 16 14 13 18 18 C 1.53000 * 109.47112 * 183.82356 * 17 16 14 19 19 C 1.50703 * 115.55331 * 294.93683 * 18 17 16 20 20 H 1.07994 * 119.99679 * 114.84102 * 19 18 17 21 21 C 1.37883 * 119.99414 * 294.56871 * 19 18 17 22 22 N 1.31509 * 119.99487 * 174.42446 * 21 19 18 23 23 Si 1.86795 * 120.00216 * 354.42653 * 21 19 18 24 24 H 1.48502 * 109.47018 * 93.11405 * 23 21 19 25 25 H 1.48504 * 109.46991 * 213.11178 * 23 21 19 26 26 H 1.48499 * 109.47148 * 333.11176 * 23 21 19 27 27 C 1.53005 * 117.49613 * 80.60308 * 18 17 16 28 28 C 1.53001 * 117.49959 * 149.26552 * 18 17 16 29 29 H 1.09003 * 109.46845 * 270.20689 * 1 2 3 30 30 H 1.08998 * 109.47056 * 30.20613 * 1 2 3 31 31 H 1.08996 * 109.46848 * 150.20457 * 1 2 3 32 32 H 1.09001 * 109.46901 * 29.98934 * 5 4 3 33 33 H 1.09009 * 109.47044 * 149.98150 * 5 4 3 34 34 H 1.08996 * 109.46860 * 300.00451 * 6 5 4 35 35 H 1.09001 * 109.46611 * 59.99785 * 6 5 4 36 36 H 1.09002 * 109.46939 * 270.02536 * 10 9 4 37 37 H 1.08996 * 109.46930 * 30.02349 * 10 9 4 38 38 H 1.08998 * 109.46685 * 150.02322 * 10 9 4 39 39 H 1.08998 * 109.47567 * 329.99830 * 12 11 9 40 40 H 1.08998 * 109.47431 * 209.99666 * 12 11 9 41 41 H 1.09007 * 109.46862 * 59.99727 * 13 12 11 42 42 H 1.08998 * 109.46796 * 300.00278 * 13 12 11 43 43 H 0.97007 * 119.99650 * 5.06716 * 16 14 13 44 44 H 1.09003 * 109.47678 * 63.82648 * 17 16 14 45 45 H 1.09001 * 109.47507 * 303.82093 * 17 16 14 46 46 H 0.96998 * 120.00070 * 180.02562 * 22 21 19 47 47 H 1.09002 * 117.49847 * 215.00206 * 27 18 17 48 48 H 1.08997 * 117.49813 * 0.02562 * 27 18 17 49 49 H 1.09003 * 117.49800 * 359.97378 * 28 18 17 50 50 H 1.08995 * 117.50224 * 144.97624 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 -0.0059 5 6 4.7899 1.5008 -0.0134 6 6 5.1942 1.7997 -1.4584 7 6 6.3813 2.6700 -1.4658 8 7 7.2969 3.3426 -1.4715 9 6 3.6142 -0.7154 -0.0034 10 6 4.8351 -1.5989 -0.0084 11 6 2.3272 -1.1329 0.0045 12 6 1.8600 -2.5657 0.0104 13 6 1.7097 -3.0472 1.4549 14 6 1.2431 -4.4801 1.4609 15 8 1.1478 -5.0912 0.4176 16 7 0.9315 -5.0826 2.6255 17 6 0.5853 -6.5059 2.6443 18 6 0.1844 -6.9146 4.0631 19 6 1.2783 -6.8339 5.0965 20 1 1.2007 -6.1291 5.9110 21 6 2.3755 -7.6639 5.0050 22 7 3.3804 -7.5199 5.8410 23 14 2.4346 -8.9929 3.6937 24 1 3.1248 -8.4683 2.4880 25 1 3.1749 -10.1700 4.2149 26 1 1.0512 -9.3970 3.3357 27 6 -1.2405 -6.5894 4.5159 28 6 -0.8454 -8.0365 4.2107 29 1 -0.3633 0.0037 1.0277 30 1 -0.3633 0.8881 -0.5170 31 1 -0.3633 -0.8918 -0.5106 32 1 4.5588 2.4342 0.4998 33 1 5.6118 0.9992 0.4975 34 1 5.4253 0.8662 -1.9715 35 1 4.3723 2.3013 -1.9693 36 1 5.1240 -1.8135 -1.0373 37 1 5.6538 -1.0901 0.5003 38 1 4.6103 -2.5321 0.5081 39 1 2.5906 -3.1883 -0.5059 40 1 0.8985 -2.6365 -0.4980 41 1 0.9790 -2.4246 1.9713 42 1 2.6712 -2.9765 1.9634 43 1 0.9367 -4.5737 3.4514 44 1 1.4466 -7.0937 2.3266 45 1 -0.2480 -6.6862 1.9651 46 1 4.1525 -8.1035 5.7765 47 1 -1.3866 -6.3171 5.5612 48 1 -1.8923 -6.0846 3.8029 49 1 -1.2376 -8.4831 3.2970 50 1 -0.7315 -8.7164 5.0550 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431154536.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:33 Heat of formation + Delta-G solvation = 49.656569 kcal Electronic energy + Delta-G solvation = -29208.087155 eV Core-core repulsion = 25236.423786 eV Total energy + Delta-G solvation = -3971.663369 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.34907 -40.61149 -38.67440 -38.09755 -36.00738 -34.86482 -34.63382 -34.23771 -33.03078 -31.22146 -29.10909 -28.63842 -27.88844 -26.91050 -25.20076 -23.78272 -23.18011 -21.26006 -20.81305 -20.42558 -20.19811 -18.81972 -18.59145 -17.79957 -17.15855 -17.00928 -16.64634 -16.35433 -16.23798 -16.12503 -15.37851 -15.16674 -14.85801 -14.81328 -14.68345 -14.32584 -14.25134 -14.05319 -13.97000 -13.84197 -13.65952 -13.47528 -13.33349 -13.28310 -13.16890 -12.97489 -12.83179 -12.65072 -12.60236 -12.44660 -12.16020 -12.07669 -12.04870 -11.87690 -11.44409 -11.25353 -10.99430 -10.82409 -10.65928 -10.28170 -9.93347 -9.80500 -9.13855 -8.28480 -6.31960 0.89834 1.34153 1.39118 1.40753 1.51097 1.72139 1.78949 1.81396 1.81898 2.37083 2.47070 2.98144 3.03864 3.38941 3.56253 3.79990 3.81938 3.96315 4.03580 4.08174 4.21543 4.26394 4.32299 4.35817 4.37563 4.50330 4.56596 4.58518 4.64426 4.69711 4.76560 4.81046 4.84081 4.87956 4.91003 4.94235 4.94960 5.12025 5.13523 5.18463 5.30251 5.31541 5.37877 5.45621 5.54164 5.67426 5.72658 5.85490 6.18162 6.32817 6.48783 6.72963 6.83968 6.85613 7.36532 7.43476 8.85761 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.002200 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.447587 B =12726.973961 C =13767.724653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.077 3.923 3 N -0.323 5.323 4 N -0.373 5.373 5 C 0.135 3.865 6 C -0.030 4.030 7 C 0.242 3.758 8 N -0.486 5.486 9 C 0.097 3.903 10 C -0.100 4.100 11 C -0.248 4.248 12 C -0.011 4.011 13 C -0.122 4.122 14 C 0.504 3.496 15 O -0.593 6.593 16 N -0.706 5.706 17 C 0.161 3.839 18 C -0.044 4.044 19 C -0.473 4.473 20 H 0.045 0.955 21 C 0.033 3.967 22 N -0.940 5.940 23 Si 0.915 3.085 24 H -0.285 1.285 25 H -0.298 1.298 26 H -0.225 1.225 27 C -0.154 4.154 28 C -0.184 4.184 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.136 0.864 35 H 0.126 0.874 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.411 0.589 44 H 0.029 0.971 45 H 0.059 0.941 46 H 0.264 0.736 47 H 0.085 0.915 48 H 0.100 0.900 49 H 0.092 0.908 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.191 16.159 -14.067 21.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 N -0.145 5.145 4 N -0.155 5.155 5 C 0.013 3.987 6 C -0.071 4.071 7 C -0.076 4.076 8 N -0.163 5.163 9 C -0.030 4.030 10 C -0.158 4.158 11 C -0.259 4.259 12 C -0.050 4.050 13 C -0.162 4.162 14 C 0.292 3.708 15 O -0.475 6.475 16 N -0.356 5.356 17 C 0.036 3.964 18 C -0.045 4.045 19 C -0.511 4.511 20 H 0.063 0.937 21 C -0.166 4.166 22 N -0.579 5.579 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.225 1.225 26 H -0.147 1.147 27 C -0.191 4.191 28 C -0.222 4.222 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.124 0.876 33 H 0.139 0.861 34 H 0.154 0.846 35 H 0.144 0.856 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.126 0.874 42 H 0.117 0.883 43 H 0.247 0.753 44 H 0.047 0.953 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.103 0.897 48 H 0.119 0.881 49 H 0.110 0.890 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.548 18.035 -14.728 23.291 hybrid contribution 0.272 -1.696 0.304 1.745 sum -0.276 16.338 -14.424 21.796 Atomic orbital electron populations 1.20281 0.85685 1.03813 1.03678 1.22548 0.97750 0.90179 0.98388 1.77278 0.86999 1.22939 1.27246 1.48371 1.05038 1.03968 1.58141 1.21656 0.84543 0.96144 0.96389 1.19680 0.89827 0.98748 0.98865 1.29064 0.93666 0.92742 0.92138 1.81341 1.13443 1.12076 1.09486 1.21198 0.97388 0.84671 0.99719 1.20650 0.92389 0.97977 1.04785 1.19724 0.91888 0.95726 1.18539 1.19409 1.01809 0.89782 0.94023 1.21645 1.03891 0.90250 1.00442 1.21405 0.76236 0.90388 0.82721 1.90626 1.55680 1.68257 1.32938 1.45938 1.68580 1.10754 1.10325 1.20817 0.97899 0.81770 0.95870 1.19497 0.90010 1.02303 0.92698 1.20356 1.02141 1.19719 1.08840 0.93657 1.25570 0.94898 0.98950 0.97170 1.70009 1.07911 1.40136 1.39882 0.86245 0.80646 0.79465 0.79454 1.21221 1.22524 1.14727 1.22839 0.96957 0.97794 1.01486 1.23077 1.04936 0.91930 1.02288 0.89804 0.90470 0.89763 0.87614 0.86099 0.84601 0.85579 0.88287 0.89071 0.90241 0.91602 0.91118 0.87378 0.88292 0.75297 0.95251 0.92269 0.92705 0.89692 0.88126 0.89000 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.26 71.24 0.73 -0.41 16 2 C 0.08 1.51 7.22 43.10 0.31 1.82 16 3 N -0.32 -6.42 12.58 -47.38 -0.60 -7.02 16 4 N -0.37 -5.47 3.61 -334.69 -1.21 -6.68 16 5 C 0.14 0.98 6.20 86.38 0.54 1.52 16 6 C -0.03 -0.14 6.03 28.79 0.17 0.04 16 7 C 0.24 2.64 15.43 89.44 1.38 4.02 16 8 N -0.49 -9.19 18.54 20.01 0.37 -8.82 16 9 C 0.10 1.53 6.93 41.40 0.29 1.82 16 10 C -0.10 -1.08 9.72 71.24 0.69 -0.38 16 11 C -0.25 -4.77 5.35 -20.15 -0.11 -4.88 16 12 C -0.01 -0.24 4.43 29.85 0.13 -0.11 16 13 C -0.12 -2.82 5.68 29.85 0.17 -2.65 16 14 C 0.50 16.36 7.82 87.65 0.69 17.05 16 15 O -0.59 -23.24 15.98 -3.03 -0.05 -23.29 16 16 N -0.71 -24.62 5.48 -463.07 -2.54 -27.15 16 17 C 0.16 6.40 5.15 86.38 0.44 6.84 16 18 C -0.04 -1.81 0.84 -52.92 -0.04 -1.86 16 19 C -0.47 -24.17 9.16 25.60 0.23 -23.94 16 20 H 0.05 2.56 8.06 -2.91 -0.02 2.54 16 21 C 0.03 1.78 5.47 84.66 0.46 2.25 16 22 N -0.94 -55.44 13.96 21.45 0.30 -55.14 16 23 Si 0.92 42.93 24.97 68.60 1.71 44.64 16 24 H -0.29 -13.65 7.02 99.48 0.70 -12.95 16 25 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 26 H -0.22 -9.54 5.73 99.48 0.57 -8.97 16 27 C -0.15 -5.27 9.96 30.62 0.30 -4.96 16 28 C -0.18 -6.82 8.03 30.62 0.25 -6.58 16 29 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.17 7.25 -2.39 -0.02 1.15 16 32 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.12 0.44 7.05 -2.38 -0.02 0.43 16 34 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.09 0.61 7.08 -2.39 -0.02 0.59 16 38 H 0.08 1.09 7.77 -2.39 -0.02 1.07 16 39 H 0.07 1.53 7.67 -2.39 -0.02 1.51 16 40 H 0.07 1.57 7.25 -2.39 -0.02 1.55 16 41 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 42 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.41 13.42 8.34 -92.70 -0.77 12.64 16 44 H 0.03 1.32 5.05 -2.39 -0.01 1.31 16 45 H 0.06 2.22 8.07 -2.39 -0.02 2.20 16 46 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 47 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 48 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 49 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 50 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -74.42 418.24 4.67 -69.75 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.04 Total: 24.12 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: 6.64 Total: -10.41 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -3.67 Total: -104.81 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.05 Total: -23.29 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.71 Total: 44.64 kcal Total: -74.42 4.67 -69.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431154536.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.404 kcal (2) G-P(sol) polarization free energy of solvation -74.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds