Wall clock time and date at job start Wed Apr 1 2020 03:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35245 * 126.07067 * 2 1 4 4 C 1.40402 * 107.86627 * 180.26863 * 3 2 1 5 5 N 1.40192 * 125.97032 * 179.70432 * 4 3 2 6 6 C 1.34777 * 120.00049 * 359.97438 * 5 4 3 7 7 O 1.21594 * 120.00167 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00065 * 180.02562 * 6 5 4 9 9 C 1.47067 * 136.05564 * 359.62712 * 8 6 5 10 10 C 1.53763 * 87.88656 * 152.96353 * 9 8 6 11 11 H 1.09001 * 114.57757 * 272.66117 * 10 9 8 12 12 C 1.53004 * 114.08624 * 139.78188 * 10 9 8 13 13 C 1.52997 * 117.49934 * 155.18849 * 12 10 9 14 14 C 1.52995 * 117.50152 * 86.56126 * 12 10 9 15 15 C 1.47075 * 136.05861 * 179.97438 * 8 6 5 16 16 H 1.09000 * 113.46126 * 92.24848 * 15 8 6 17 17 C 1.52996 * 113.46394 * 321.86769 * 15 8 6 18 18 C 1.53011 * 117.49399 * 148.25038 * 17 15 8 19 19 C 1.53001 * 117.49880 * 79.59621 * 17 15 8 20 20 N 1.31206 * 108.05388 * 359.55112 * 4 3 2 21 21 N 1.34964 * 126.06967 * 180.02562 * 2 1 3 22 22 C 1.46495 * 125.98003 * 359.97438 * 21 2 1 23 23 C 1.50706 * 109.47097 * 90.00343 * 22 21 2 24 24 H 1.08007 * 119.99412 * 0.02562 * 23 22 21 25 25 C 1.37871 * 120.00379 * 180.02562 * 23 22 21 26 26 N 1.31514 * 120.00104 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00030 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47676 * 60.00022 * 27 25 23 29 29 H 1.48504 * 109.47436 * 180.02562 * 27 25 23 30 30 H 1.48504 * 109.47090 * 299.99593 * 27 25 23 31 31 H 1.09000 * 109.47235 * 90.02887 * 1 2 3 32 32 H 1.09002 * 109.46906 * 210.02616 * 1 2 3 33 33 H 1.09002 * 109.47281 * 330.02027 * 1 2 3 34 34 H 1.08002 * 126.06264 * 359.97438 * 3 2 1 35 35 H 0.97005 * 120.00073 * 179.97438 * 5 4 3 36 36 H 1.08997 * 113.47027 * 267.69458 * 9 8 6 37 37 H 1.08992 * 113.47009 * 38.13842 * 9 8 6 38 38 H 1.09006 * 115.54384 * 300.88984 * 12 10 9 39 39 H 1.08998 * 117.49680 * 359.97438 * 13 12 10 40 40 H 1.08994 * 117.49991 * 145.01871 * 13 12 10 41 41 H 1.09002 * 117.49651 * 214.97948 * 14 12 10 42 42 H 1.09005 * 117.49826 * 359.97438 * 14 12 10 43 43 H 1.08998 * 115.55352 * 293.91619 * 17 15 8 44 44 H 1.08995 * 117.49982 * 359.97438 * 18 17 15 45 45 H 1.08994 * 117.49356 * 145.01630 * 18 17 15 46 46 H 1.09003 * 117.49540 * 214.97461 * 19 17 15 47 47 H 1.08999 * 117.50011 * 359.97438 * 19 17 15 48 48 H 1.09001 * 109.47824 * 210.00426 * 22 21 2 49 49 H 1.09000 * 109.47266 * 330.01266 * 22 21 2 50 50 H 0.97000 * 119.99989 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6370 0.6546 -0.0063 5 7 4.7737 1.4751 -0.0142 6 6 4.6369 2.8159 -0.0168 7 8 3.5276 3.3139 -0.0119 8 7 5.7296 3.6048 -0.0249 9 6 7.1855 3.3971 -0.0259 10 6 7.3214 4.7546 -0.7352 11 1 7.2506 4.7074 -1.8219 12 6 8.4960 5.6020 -0.2421 13 6 9.0717 6.6408 -1.2066 14 6 9.8598 5.3670 -0.8946 15 6 5.9909 5.0522 -0.0305 16 1 6.1119 5.4751 0.9667 17 6 5.0081 5.8452 -0.8942 18 6 4.6686 7.2699 -0.4511 19 6 3.6330 6.1531 -0.2982 20 7 3.6336 -0.6575 -0.0001 21 7 2.3016 -1.0909 -0.0005 22 6 1.8501 -2.4846 -0.0006 23 6 1.6949 -2.9622 -1.4215 24 1 1.9114 -2.2944 -2.2423 25 6 1.2765 -4.2515 -1.6736 26 7 1.0125 -5.0645 -0.6741 27 14 1.0848 -4.8437 -3.4348 28 1 2.3910 -4.7471 -4.1346 29 1 0.6258 -6.2560 -3.4351 30 1 0.0844 -3.9986 -4.1351 31 1 -0.3634 -0.0005 -1.0277 32 1 -0.3633 -0.8898 0.5143 33 1 -0.3634 0.8902 0.5135 34 1 1.9719 2.1211 -0.0004 35 1 5.6587 1.0779 -0.0177 36 1 7.6227 3.3835 0.9725 37 1 7.5032 2.5526 -0.6373 38 1 8.4820 5.8529 0.8186 39 1 8.6139 6.7202 -2.1926 40 1 9.4366 7.5754 -0.7807 41 1 10.7430 5.4636 -0.2632 42 1 9.9203 4.6083 -1.6749 43 1 5.0602 5.6503 -1.9654 44 1 5.1451 7.6419 0.4559 45 1 4.4971 8.0120 -1.2308 46 1 2.7805 6.1611 -0.9774 47 1 3.4283 5.7903 0.7090 48 1 2.5849 -3.1047 0.5129 49 1 0.8916 -2.5560 0.5134 50 1 0.7185 -5.9717 -0.8515 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565464319.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:25 Heat of formation + Delta-G solvation = 142.804079 kcal Electronic energy + Delta-G solvation = -29743.974922 eV Core-core repulsion = 25776.350732 eV Total energy + Delta-G solvation = -3967.624190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.15208 -40.39943 -38.58079 -37.11860 -36.14644 -34.63807 -33.31742 -31.46329 -30.87445 -29.55188 -26.79891 -26.52221 -26.25070 -24.05751 -22.85094 -22.68914 -22.34006 -21.63298 -20.51203 -20.41551 -19.63152 -18.90447 -17.56409 -16.65632 -16.35113 -16.14959 -15.93576 -15.49565 -15.03739 -14.91738 -14.72734 -14.22720 -14.03477 -13.94932 -13.74981 -13.38009 -13.00065 -12.74148 -12.44475 -12.35509 -12.23457 -12.10606 -11.90599 -11.63122 -11.59810 -11.53466 -11.38985 -11.34972 -11.07286 -10.79574 -10.74285 -10.62454 -10.42060 -10.37348 -10.19553 -9.96643 -9.78591 -9.50266 -9.47557 -8.84420 -8.61692 -7.85944 -7.34621 -6.22878 -4.30397 2.17608 2.70915 3.15104 3.24488 3.24744 3.28281 3.31892 3.39137 3.82071 3.87002 4.09405 4.15569 4.24448 4.33403 4.47110 4.58354 4.71109 4.74452 4.86299 4.88743 4.93809 4.99935 5.10055 5.10584 5.19925 5.28059 5.34166 5.44369 5.52019 5.53454 5.58638 5.73683 5.74566 5.77333 5.91409 5.95657 5.98704 6.05224 6.15345 6.18389 6.32686 6.50982 6.66184 6.80499 6.96357 7.08641 7.30346 7.59779 7.69828 7.92115 8.03779 8.11663 8.69432 8.72638 8.79602 9.35607 10.84205 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016118 B = 0.002244 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.805030 B =12474.420561 C =13343.393278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.090 3.910 3 C -0.288 4.288 4 C 0.285 3.715 5 N -0.643 5.643 6 C 0.743 3.257 7 O -0.553 6.553 8 N -0.661 5.661 9 C 0.101 3.899 10 C -0.084 4.084 11 H 0.106 0.894 12 C -0.142 4.142 13 C -0.174 4.174 14 C -0.177 4.177 15 C 0.198 3.802 16 H 0.090 0.910 17 C -0.160 4.160 18 C -0.180 4.180 19 C -0.141 4.141 20 N -0.326 5.326 21 N -0.319 5.319 22 C 0.260 3.740 23 C -0.535 4.535 24 H 0.063 0.937 25 C 0.065 3.935 26 N -0.892 5.892 27 Si 0.906 3.094 28 H -0.275 1.275 29 H -0.284 1.284 30 H -0.274 1.274 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.160 0.840 35 H 0.404 0.596 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.051 0.949 49 H 0.054 0.946 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.863 23.932 1.938 27.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 C -0.320 4.320 4 C 0.031 3.969 5 N -0.292 5.292 6 C 0.446 3.554 7 O -0.427 6.427 8 N -0.401 5.401 9 C -0.023 4.023 10 C -0.104 4.104 11 H 0.124 0.876 12 C -0.161 4.161 13 C -0.211 4.211 14 C -0.214 4.214 15 C 0.094 3.906 16 H 0.108 0.892 17 C -0.179 4.179 18 C -0.217 4.217 19 C -0.178 4.178 20 N -0.156 5.156 21 N -0.101 5.101 22 C 0.142 3.858 23 C -0.573 4.573 24 H 0.081 0.919 25 C -0.138 4.138 26 N -0.530 5.530 27 Si 0.733 3.267 28 H -0.200 1.200 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.178 0.822 35 H 0.238 0.762 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.126 0.874 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.121 0.879 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.110 0.890 47 H 0.115 0.885 48 H 0.069 0.931 49 H 0.072 0.928 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.437 22.757 2.011 26.505 hybrid contribution 0.061 -0.167 -0.942 0.959 sum 13.497 22.591 1.068 26.338 Atomic orbital electron populations 1.20320 0.87973 1.02739 1.03096 1.21051 0.94850 0.87194 1.01027 1.21223 0.89654 0.99769 1.21309 1.18651 0.86530 0.89207 1.02487 1.41356 1.07480 1.03606 1.76782 1.14899 0.82898 0.79842 0.77783 1.90869 1.22281 1.73120 1.56434 1.48688 1.04599 1.07965 1.78840 1.23041 0.80297 0.98189 1.00750 1.22681 0.92742 0.94512 1.00428 0.87550 1.22085 0.93541 1.02020 0.98450 1.22946 1.03913 0.93639 1.00596 1.22946 0.94541 1.00228 1.03660 1.22052 0.91136 0.79661 0.97714 0.89220 1.22339 0.98701 0.97425 0.99439 1.22996 1.04654 0.91081 1.02993 1.22740 0.92065 1.00149 1.02850 1.77248 0.99915 1.08345 1.30126 1.48944 1.00893 1.07700 1.52596 1.19656 0.95909 0.71414 0.98840 1.21289 1.46695 0.97925 0.91417 0.91852 1.24923 0.94723 0.96081 0.98080 1.69911 1.44960 1.07123 1.31049 0.86417 0.78784 0.77656 0.83828 1.20022 1.20968 1.19946 0.90499 0.90931 0.90872 0.82240 0.76206 0.89632 0.90332 0.87406 0.88636 0.88770 0.88703 0.88606 0.87855 0.89001 0.88931 0.88961 0.88516 0.93087 0.92848 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 10.11 36.00 0.36 -1.10 16 2 C 0.09 1.96 6.92 -82.28 -0.57 1.39 16 3 C -0.29 -6.15 9.52 -39.83 -0.38 -6.53 16 4 C 0.28 6.05 8.11 -154.37 -1.25 4.80 16 5 N -0.64 -10.86 5.45 -15.51 -0.08 -10.94 16 6 C 0.74 11.85 8.67 -86.92 -0.75 11.10 16 7 O -0.55 -10.25 12.00 5.28 0.06 -10.18 16 8 N -0.66 -7.59 3.56 -182.97 -0.65 -8.25 16 9 C 0.10 0.77 7.87 -8.36 -0.07 0.71 16 10 C -0.08 -0.57 3.70 -89.98 -0.33 -0.90 16 11 H 0.11 0.76 8.11 -51.93 -0.42 0.34 16 12 C -0.14 -0.74 5.47 -90.62 -0.50 -1.24 16 13 C -0.17 -0.87 10.25 -26.73 -0.27 -1.14 16 14 C -0.18 -0.86 10.25 -26.73 -0.27 -1.14 16 15 C 0.20 1.78 3.71 -72.39 -0.27 1.51 16 16 H 0.09 0.74 8.08 -51.93 -0.42 0.32 16 17 C -0.16 -1.58 5.28 -90.62 -0.48 -2.05 16 18 C -0.18 -1.47 10.24 -26.69 -0.27 -1.74 16 19 C -0.14 -1.57 8.66 -26.69 -0.23 -1.80 16 20 N -0.33 -7.76 12.59 31.44 0.40 -7.36 16 21 N -0.32 -7.77 3.59 -58.33 -0.21 -7.98 16 22 C 0.26 6.78 5.99 -5.19 -0.03 6.75 16 23 C -0.53 -14.96 9.39 -34.44 -0.32 -15.29 16 24 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 25 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 26 N -0.89 -25.33 13.29 55.43 0.74 -24.60 16 27 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 28 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 29 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 30 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 31 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.07 1.28 7.07 -51.93 -0.37 0.92 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.16 3.34 5.91 -52.49 -0.31 3.03 16 35 H 0.40 5.75 8.54 -40.82 -0.35 5.40 16 36 H 0.09 0.54 8.10 -51.93 -0.42 0.12 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.10 1.08 8.13 -51.93 -0.42 0.65 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.10 1.22 7.90 -51.93 -0.41 0.81 16 48 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 49 H 0.05 1.38 7.04 -51.93 -0.37 1.01 16 50 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 413.66 15.07 6.23 6.23 Total: -1.00 -32.65 413.66 -12.38 -45.02 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -8.10 Total: 6.68 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -5.74 Total: -4.98 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.19 Total: -59.12 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.06 Total: -10.18 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.65 -12.38 -45.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565464319.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.829 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds