Wall clock time and date at job start Wed Apr 1 2020 03:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35245 * 126.07067 * 2 1 4 4 C 1.40402 * 107.86627 * 180.26863 * 3 2 1 5 5 N 1.40192 * 125.97032 * 179.70432 * 4 3 2 6 6 C 1.34777 * 120.00049 * 359.97438 * 5 4 3 7 7 O 1.21594 * 120.00167 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00065 * 180.02562 * 6 5 4 9 9 C 1.47067 * 136.05564 * 359.62712 * 8 6 5 10 10 C 1.53763 * 87.88656 * 152.96353 * 9 8 6 11 11 H 1.09001 * 114.57757 * 272.66117 * 10 9 8 12 12 C 1.53004 * 114.08624 * 139.78188 * 10 9 8 13 13 C 1.52997 * 117.49934 * 155.18849 * 12 10 9 14 14 C 1.52995 * 117.50152 * 86.56126 * 12 10 9 15 15 C 1.47075 * 136.05861 * 179.97438 * 8 6 5 16 16 H 1.09000 * 113.46126 * 92.24848 * 15 8 6 17 17 C 1.52996 * 113.46394 * 321.86769 * 15 8 6 18 18 C 1.53011 * 117.49399 * 148.25038 * 17 15 8 19 19 C 1.53001 * 117.49880 * 79.59621 * 17 15 8 20 20 N 1.31206 * 108.05388 * 359.55112 * 4 3 2 21 21 N 1.34964 * 126.06967 * 180.02562 * 2 1 3 22 22 C 1.46495 * 125.98003 * 359.97438 * 21 2 1 23 23 C 1.50706 * 109.47097 * 90.00343 * 22 21 2 24 24 H 1.08007 * 119.99412 * 0.02562 * 23 22 21 25 25 C 1.37871 * 120.00379 * 180.02562 * 23 22 21 26 26 N 1.31514 * 120.00104 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00030 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47676 * 60.00022 * 27 25 23 29 29 H 1.48504 * 109.47436 * 180.02562 * 27 25 23 30 30 H 1.48504 * 109.47090 * 299.99593 * 27 25 23 31 31 H 1.09000 * 109.47235 * 90.02887 * 1 2 3 32 32 H 1.09002 * 109.46906 * 210.02616 * 1 2 3 33 33 H 1.09002 * 109.47281 * 330.02027 * 1 2 3 34 34 H 1.08002 * 126.06264 * 359.97438 * 3 2 1 35 35 H 0.97005 * 120.00073 * 179.97438 * 5 4 3 36 36 H 1.08997 * 113.47027 * 267.69458 * 9 8 6 37 37 H 1.08992 * 113.47009 * 38.13842 * 9 8 6 38 38 H 1.09006 * 115.54384 * 300.88984 * 12 10 9 39 39 H 1.08998 * 117.49680 * 359.97438 * 13 12 10 40 40 H 1.08994 * 117.49991 * 145.01871 * 13 12 10 41 41 H 1.09002 * 117.49651 * 214.97948 * 14 12 10 42 42 H 1.09005 * 117.49826 * 359.97438 * 14 12 10 43 43 H 1.08998 * 115.55352 * 293.91619 * 17 15 8 44 44 H 1.08995 * 117.49982 * 359.97438 * 18 17 15 45 45 H 1.08994 * 117.49356 * 145.01630 * 18 17 15 46 46 H 1.09003 * 117.49540 * 214.97461 * 19 17 15 47 47 H 1.08999 * 117.50011 * 359.97438 * 19 17 15 48 48 H 1.09001 * 109.47824 * 210.00426 * 22 21 2 49 49 H 1.09000 * 109.47266 * 330.01266 * 22 21 2 50 50 H 0.97000 * 119.99989 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6370 0.6546 -0.0063 5 7 4.7737 1.4751 -0.0142 6 6 4.6369 2.8159 -0.0168 7 8 3.5276 3.3139 -0.0119 8 7 5.7296 3.6048 -0.0249 9 6 7.1855 3.3971 -0.0259 10 6 7.3214 4.7546 -0.7352 11 1 7.2506 4.7074 -1.8219 12 6 8.4960 5.6020 -0.2421 13 6 9.0717 6.6408 -1.2066 14 6 9.8598 5.3670 -0.8946 15 6 5.9909 5.0522 -0.0305 16 1 6.1119 5.4751 0.9667 17 6 5.0081 5.8452 -0.8942 18 6 4.6686 7.2699 -0.4511 19 6 3.6330 6.1531 -0.2982 20 7 3.6336 -0.6575 -0.0001 21 7 2.3016 -1.0909 -0.0005 22 6 1.8501 -2.4846 -0.0006 23 6 1.6949 -2.9622 -1.4215 24 1 1.9114 -2.2944 -2.2423 25 6 1.2765 -4.2515 -1.6736 26 7 1.0125 -5.0645 -0.6741 27 14 1.0848 -4.8437 -3.4348 28 1 2.3910 -4.7471 -4.1346 29 1 0.6258 -6.2560 -3.4351 30 1 0.0844 -3.9986 -4.1351 31 1 -0.3634 -0.0005 -1.0277 32 1 -0.3633 -0.8898 0.5143 33 1 -0.3634 0.8902 0.5135 34 1 1.9719 2.1211 -0.0004 35 1 5.6587 1.0779 -0.0177 36 1 7.6227 3.3835 0.9725 37 1 7.5032 2.5526 -0.6373 38 1 8.4820 5.8529 0.8186 39 1 8.6139 6.7202 -2.1926 40 1 9.4366 7.5754 -0.7807 41 1 10.7430 5.4636 -0.2632 42 1 9.9203 4.6083 -1.6749 43 1 5.0602 5.6503 -1.9654 44 1 5.1451 7.6419 0.4559 45 1 4.4971 8.0120 -1.2308 46 1 2.7805 6.1611 -0.9774 47 1 3.4283 5.7903 0.7090 48 1 2.5849 -3.1047 0.5129 49 1 0.8916 -2.5560 0.5134 50 1 0.7185 -5.9717 -0.8515 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565464319.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:23 Heat of formation + Delta-G solvation = 125.797899 kcal Electronic energy + Delta-G solvation = -29744.712366 eV Core-core repulsion = 25776.350732 eV Total energy + Delta-G solvation = -3968.361633 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.36544 -41.72504 -39.73496 -37.72666 -36.85990 -36.21784 -35.25136 -33.08571 -32.64776 -30.60566 -28.45141 -27.87382 -27.45519 -25.27867 -24.38166 -23.14124 -23.04245 -22.63193 -21.67326 -21.23550 -20.96558 -20.22094 -18.82724 -18.60127 -17.77407 -17.20074 -16.96786 -16.73124 -16.32423 -16.13251 -15.81285 -15.62515 -15.51284 -14.94114 -14.59756 -14.53810 -14.32694 -13.99868 -13.80687 -13.71056 -13.58208 -13.34819 -13.14343 -13.00486 -12.85442 -12.66602 -12.36091 -12.26121 -12.24575 -12.15989 -12.09047 -12.00509 -11.58060 -11.36845 -11.34000 -11.18075 -11.15719 -10.74758 -10.71731 -10.43529 -9.83474 -9.54895 -9.05346 -8.32620 -6.50653 0.95443 1.05532 1.37351 1.38996 1.47969 1.68178 1.93208 2.33894 2.40597 2.71573 2.83530 2.96491 3.09968 3.53560 3.66634 3.79270 3.89129 3.97263 4.12648 4.15311 4.16960 4.18221 4.29518 4.32883 4.40403 4.41691 4.49711 4.60337 4.66692 4.70968 4.76179 4.86439 4.88477 4.90261 4.95010 4.98476 5.01994 5.10713 5.15309 5.17938 5.20195 5.30763 5.31709 5.34885 5.40308 5.45715 5.53208 5.80900 5.96240 6.05578 6.27065 6.61181 6.77530 7.11060 7.20036 7.46480 8.72824 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016118 B = 0.002244 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.805030 B =12474.420561 C =13343.393278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.087 3.913 3 C -0.296 4.296 4 C 0.295 3.705 5 N -0.637 5.637 6 C 0.736 3.264 7 O -0.584 6.584 8 N -0.662 5.662 9 C 0.097 3.903 10 C -0.065 4.065 11 H 0.103 0.897 12 C -0.141 4.141 13 C -0.175 4.175 14 C -0.175 4.175 15 C 0.193 3.807 16 H 0.104 0.896 17 C -0.166 4.166 18 C -0.148 4.148 19 C -0.165 4.165 20 N -0.362 5.362 21 N -0.343 5.343 22 C 0.276 3.724 23 C -0.553 4.553 24 H 0.048 0.952 25 C 0.023 3.977 26 N -0.918 5.918 27 Si 0.971 3.029 28 H -0.276 1.276 29 H -0.272 1.272 30 H -0.266 1.266 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.165 0.835 35 H 0.415 0.585 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.119 0.881 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.110 0.890 45 H 0.106 0.894 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.024 0.976 49 H 0.052 0.948 50 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.279 25.718 1.353 29.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.043 4.043 3 C -0.327 4.327 4 C 0.040 3.960 5 N -0.289 5.289 6 C 0.439 3.561 7 O -0.461 6.461 8 N -0.400 5.400 9 C -0.024 4.024 10 C -0.084 4.084 11 H 0.121 0.879 12 C -0.160 4.160 13 C -0.212 4.212 14 C -0.212 4.212 15 C 0.090 3.910 16 H 0.121 0.879 17 C -0.185 4.185 18 C -0.185 4.185 19 C -0.203 4.203 20 N -0.193 5.193 21 N -0.126 5.126 22 C 0.157 3.843 23 C -0.591 4.591 24 H 0.066 0.934 25 C -0.178 4.178 26 N -0.556 5.556 27 Si 0.795 3.205 28 H -0.201 1.201 29 H -0.196 1.196 30 H -0.191 1.191 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.183 0.817 35 H 0.251 0.749 36 H 0.125 0.875 37 H 0.104 0.896 38 H 0.137 0.863 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.128 0.872 45 H 0.124 0.876 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.042 0.958 49 H 0.070 0.930 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.914 24.592 1.433 28.796 hybrid contribution -0.294 -0.579 -0.731 0.977 sum 14.620 24.013 0.703 28.122 Atomic orbital electron populations 1.20454 0.85359 1.04168 1.03878 1.21729 0.96623 0.86448 0.99550 1.21373 0.89863 0.99806 1.21663 1.18935 0.88005 0.88861 1.00243 1.41390 1.06834 1.03843 1.76810 1.15102 0.83744 0.79516 0.77750 1.90836 1.24026 1.73470 1.57787 1.48816 1.05218 1.08977 1.77027 1.23365 0.77593 0.99168 1.02316 1.22505 0.92052 0.93895 0.99953 0.87896 1.22024 0.92909 1.02011 0.99025 1.23008 1.03733 0.94036 1.00398 1.23002 0.94522 1.00115 1.03592 1.22377 0.91873 0.78061 0.98647 0.87854 1.22389 0.97905 0.99161 0.99079 1.23064 1.01557 0.90127 1.03749 1.22596 0.92631 1.03428 1.01602 1.77165 1.00090 1.09707 1.32359 1.48754 1.01624 1.07469 1.54737 1.19233 0.94880 0.72396 0.97770 1.21398 1.47596 0.98392 0.91745 0.93364 1.25732 0.93943 0.95902 1.02262 1.69994 1.45000 1.07549 1.33030 0.85416 0.78722 0.77715 0.78695 1.20105 1.19622 1.19058 0.89889 0.91216 0.87675 0.81748 0.74852 0.87543 0.89559 0.86343 0.88923 0.87924 0.87867 0.88783 0.88716 0.87215 0.87576 0.90425 0.90481 0.95805 0.93003 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.82 10.11 71.24 0.72 -2.10 16 2 C 0.09 3.83 6.92 41.39 0.29 4.12 16 3 C -0.30 -12.82 9.52 22.11 0.21 -12.61 16 4 C 0.29 12.75 8.11 133.32 1.08 13.83 16 5 N -0.64 -21.60 5.45 -321.23 -1.75 -23.35 16 6 C 0.74 23.41 8.67 179.05 1.55 24.96 16 7 O -0.58 -22.01 12.00 -4.01 -0.05 -22.06 16 8 N -0.66 -14.47 3.56 -851.05 -3.03 -17.50 16 9 C 0.10 1.28 7.87 83.28 0.66 1.93 16 10 C -0.06 -0.72 3.70 -10.38 -0.04 -0.76 16 11 H 0.10 1.27 8.11 -2.39 -0.02 1.25 16 12 C -0.14 -1.05 5.47 -10.80 -0.06 -1.11 16 13 C -0.17 -1.26 10.25 30.59 0.31 -0.95 16 14 C -0.18 -1.23 10.25 30.59 0.31 -0.91 16 15 C 0.19 3.13 3.71 41.79 0.16 3.28 16 16 H 0.10 1.44 8.08 -2.39 -0.02 1.42 16 17 C -0.17 -3.11 5.28 -10.79 -0.06 -3.16 16 18 C -0.15 -2.12 10.24 30.62 0.31 -1.80 16 19 C -0.17 -3.69 8.66 30.62 0.27 -3.43 16 20 N -0.36 -17.79 12.59 -54.44 -0.69 -18.48 16 21 N -0.34 -17.25 3.59 -338.45 -1.22 -18.47 16 22 C 0.28 14.98 5.99 85.64 0.51 15.49 16 23 C -0.55 -31.66 9.39 25.60 0.24 -31.42 16 24 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 25 C 0.02 1.26 5.46 84.65 0.46 1.72 16 26 N -0.92 -52.48 13.29 21.44 0.28 -52.19 16 27 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 28 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 29 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 30 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 31 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.07 2.47 7.07 -2.39 -0.02 2.45 16 33 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 34 H 0.17 6.97 5.91 -2.91 -0.02 6.96 16 35 H 0.42 11.72 8.54 -92.70 -0.79 10.93 16 36 H 0.11 1.03 8.10 -2.39 -0.02 1.01 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.09 1.92 8.13 -2.39 -0.02 1.90 16 44 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.08 2.02 7.90 -2.39 -0.02 2.00 16 48 H 0.02 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.05 2.78 7.04 -2.39 -0.02 2.76 16 50 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -72.29 413.66 2.66 -69.63 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: 0.16 Total: 29.63 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 6.93 Total: 7.08 kcal Atomic # 7 Polarization: -123.58 SS G_CDS: -6.40 Total: -129.98 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.05 Total: -22.06 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -72.29 2.66 -69.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565464319.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.429 kcal (2) G-P(sol) polarization free energy of solvation -72.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds