Wall clock time and date at job start Wed Apr 1 2020 03:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35247 * 126.06601 * 2 1 4 4 C 1.40400 * 107.86378 * 179.97438 * 3 2 1 5 5 N 1.40194 * 125.97172 * 180.02562 * 4 3 2 6 6 C 1.34775 * 120.00068 * 0.02562 * 5 4 3 7 7 O 1.21594 * 119.99950 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99967 * 180.02562 * 6 5 4 9 9 C 1.47808 * 134.45871 * 359.86192 * 8 6 5 10 10 C 1.53949 * 86.04003 * 204.64796 * 9 8 6 11 11 H 1.08997 * 113.73905 * 90.88257 * 10 9 8 12 12 C 1.52996 * 113.74143 * 222.08463 * 10 9 8 13 13 C 1.53002 * 117.49888 * 209.99360 * 12 10 9 14 14 C 1.53000 * 117.50107 * 278.65122 * 12 10 9 15 15 C 1.47578 * 134.49106 * 180.02562 * 8 6 5 16 16 H 1.09003 * 113.77509 * 41.05212 * 15 8 6 17 17 C 1.52999 * 113.76985 * 269.65451 * 15 8 6 18 18 C 1.53004 * 117.50198 * 152.25342 * 17 15 8 19 19 C 1.53004 * 117.49890 * 83.59145 * 17 15 8 20 20 N 1.31210 * 108.05500 * 0.26240 * 4 3 2 21 21 N 1.34965 * 126.07398 * 179.97438 * 2 1 3 22 22 C 1.46501 * 125.97091 * 0.02562 * 21 2 1 23 23 C 1.50702 * 109.47074 * 90.00232 * 22 21 2 24 24 H 1.08006 * 119.99571 * 359.97438 * 23 22 21 25 25 C 1.37870 * 120.00417 * 179.97438 * 23 22 21 26 26 N 1.31517 * 119.99567 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00419 * 180.02562 * 25 23 22 28 28 H 1.48490 * 109.47342 * 89.99990 * 27 25 23 29 29 H 1.48502 * 109.46976 * 210.00012 * 27 25 23 30 30 H 1.48499 * 109.47090 * 329.99638 * 27 25 23 31 31 H 1.09003 * 109.46787 * 90.02651 * 1 2 3 32 32 H 1.09002 * 109.47085 * 210.02211 * 1 2 3 33 33 H 1.08998 * 109.47528 * 330.02712 * 1 2 3 34 34 H 1.07999 * 126.06787 * 359.97438 * 3 2 1 35 35 H 0.97003 * 120.00096 * 179.97438 * 5 4 3 36 36 H 1.09001 * 113.76989 * 90.38349 * 9 8 6 37 37 H 1.09004 * 113.83763 * 318.91950 * 9 8 6 38 38 H 1.09002 * 115.54951 * 64.32333 * 12 10 9 39 39 H 1.09000 * 117.49996 * 215.00804 * 13 12 10 40 40 H 1.08999 * 117.49664 * 0.02562 * 13 12 10 41 41 H 1.09008 * 117.49673 * 359.97438 * 14 12 10 42 42 H 1.08999 * 117.49942 * 144.97366 * 14 12 10 43 43 H 1.08997 * 115.54990 * 297.92295 * 17 15 8 44 44 H 1.09001 * 117.49522 * 359.97438 * 18 17 15 45 45 H 1.09000 * 117.50134 * 145.02091 * 18 17 15 46 46 H 1.08993 * 117.49822 * 214.98044 * 19 17 15 47 47 H 1.09003 * 117.49498 * 359.97438 * 19 17 15 48 48 H 1.09001 * 109.46964 * 209.99760 * 22 21 2 49 49 H 1.08994 * 109.47755 * 330.00415 * 22 21 2 50 50 H 0.97004 * 120.00121 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0933 0.0000 4 6 3.6370 0.6547 0.0006 5 7 4.7737 1.4753 0.0013 6 6 4.6369 2.8161 0.0020 7 8 3.5276 3.3140 0.0015 8 7 5.7297 3.6049 0.0021 9 6 7.1865 3.3555 0.0042 10 6 7.3166 4.7502 0.6428 11 1 7.2976 4.7374 1.7326 12 6 8.4687 5.5822 0.0761 13 6 9.1357 6.5939 1.0102 14 6 9.8720 5.3095 0.6213 15 6 5.9520 5.0639 0.0032 16 1 5.2749 5.6111 0.6591 17 6 6.0526 5.6734 -1.3965 18 6 5.6375 7.1368 -1.5613 19 6 4.7453 6.0210 -2.1113 20 7 3.6336 -0.6574 -0.0048 21 7 2.3017 -1.0909 0.0005 22 6 1.8501 -2.4845 0.0006 23 6 1.6958 -2.9627 -1.4202 24 1 1.9121 -2.2950 -2.2411 25 6 1.2786 -4.2523 -1.6722 26 7 1.0157 -5.0655 -0.6725 27 14 1.0880 -4.8452 -3.4333 28 1 2.3695 -5.4335 -3.8990 29 1 0.0192 -5.8743 -3.4962 30 1 0.7237 -3.6993 -4.3047 31 1 -0.3633 -0.0005 -1.0277 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3634 0.8902 0.5134 34 1 1.9719 2.1212 -0.0004 35 1 5.6586 1.0781 0.0021 36 1 7.6219 3.2864 -0.9927 37 1 7.4931 2.5413 0.6610 38 1 8.3811 5.8508 -0.9767 39 1 9.4870 7.5281 0.5720 40 1 8.7540 6.6664 2.0286 41 1 9.9744 4.5376 1.3841 42 1 10.7076 5.3982 -0.0729 43 1 6.8800 5.3131 -2.0077 44 1 5.2922 7.6651 -0.6726 45 1 6.1915 7.7391 -2.2813 46 1 4.7127 5.8898 -3.1928 47 1 3.8135 5.8150 -1.5845 48 1 2.5846 -3.1044 0.5148 49 1 0.8913 -2.5558 0.5140 50 1 0.7218 -5.9728 -0.8497 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565464320.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:28 Heat of formation + Delta-G solvation = 139.469244 kcal Electronic energy + Delta-G solvation = -29687.499066 eV Core-core repulsion = 25719.730267 eV Total energy + Delta-G solvation = -3967.768799 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.14704 -40.41371 -38.67643 -37.03660 -36.10078 -34.67717 -33.32433 -31.46571 -30.87193 -29.51253 -26.79931 -26.51521 -26.24974 -24.00580 -22.90382 -22.69991 -22.49716 -22.29808 -21.01101 -19.66168 -19.49124 -18.57661 -17.74758 -16.66175 -16.43382 -16.23866 -16.01155 -15.50230 -15.11771 -14.93693 -14.74974 -14.18515 -14.08008 -14.03026 -13.77678 -13.46017 -12.96610 -12.72360 -12.45057 -12.36707 -12.24268 -12.11268 -11.91352 -11.76165 -11.70553 -11.63218 -11.36055 -11.23210 -11.07516 -10.81420 -10.67901 -10.65105 -10.50311 -10.39870 -10.21245 -10.08690 -9.89363 -9.56786 -9.49283 -8.83895 -8.62105 -7.86271 -7.35114 -6.23061 -4.30452 2.14979 2.69507 3.14696 3.22969 3.25958 3.29014 3.31702 3.37232 3.66479 3.86571 4.03039 4.16794 4.24881 4.32692 4.36233 4.56778 4.66423 4.70906 4.75378 4.83192 4.96657 5.00852 5.06693 5.10498 5.22099 5.28048 5.31377 5.41473 5.43405 5.52185 5.57678 5.69853 5.74301 5.75039 5.77135 5.86269 5.94853 5.98275 6.01100 6.15519 6.31948 6.50739 6.65807 6.79711 6.96036 7.08516 7.28163 7.58868 7.69939 7.91969 8.00984 8.11350 8.66848 8.72125 8.79571 9.35618 10.84057 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.002152 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.210413 B =13005.270336 C =13363.896543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.091 3.909 3 C -0.289 4.289 4 C 0.284 3.716 5 N -0.642 5.642 6 C 0.738 3.262 7 O -0.563 6.563 8 N -0.656 5.656 9 C 0.105 3.895 10 C -0.082 4.082 11 H 0.103 0.897 12 C -0.144 4.144 13 C -0.176 4.176 14 C -0.179 4.179 15 C 0.199 3.801 16 H 0.091 0.909 17 C -0.162 4.162 18 C -0.166 4.166 19 C -0.168 4.168 20 N -0.325 5.325 21 N -0.319 5.319 22 C 0.259 3.741 23 C -0.534 4.534 24 H 0.064 0.936 25 C 0.065 3.935 26 N -0.892 5.892 27 Si 0.906 3.094 28 H -0.278 1.278 29 H -0.283 1.283 30 H -0.272 1.272 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.159 0.841 35 H 0.404 0.596 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.108 0.892 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.102 0.898 48 H 0.051 0.949 49 H 0.054 0.946 50 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.622 23.912 2.394 28.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 C -0.320 4.320 4 C 0.030 3.970 5 N -0.291 5.291 6 C 0.440 3.560 7 O -0.438 6.438 8 N -0.396 5.396 9 C -0.018 4.018 10 C -0.102 4.102 11 H 0.122 0.878 12 C -0.162 4.162 13 C -0.213 4.213 14 C -0.216 4.216 15 C 0.095 3.905 16 H 0.109 0.891 17 C -0.181 4.181 18 C -0.203 4.203 19 C -0.205 4.205 20 N -0.156 5.156 21 N -0.101 5.101 22 C 0.141 3.859 23 C -0.573 4.573 24 H 0.082 0.918 25 C -0.138 4.138 26 N -0.530 5.530 27 Si 0.733 3.267 28 H -0.204 1.204 29 H -0.209 1.209 30 H -0.197 1.197 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.177 0.823 35 H 0.239 0.761 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.131 0.869 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.126 0.874 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.112 0.888 47 H 0.120 0.880 48 H 0.069 0.931 49 H 0.072 0.928 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.213 22.748 2.459 26.936 hybrid contribution 0.054 -0.186 -1.089 1.106 sum 14.267 22.562 1.371 26.730 Atomic orbital electron populations 1.20324 0.87944 1.02755 1.03117 1.21050 0.94862 0.87174 1.00994 1.21221 0.89698 0.99765 1.21324 1.18666 0.86547 0.89233 1.02535 1.41348 1.07489 1.03608 1.76650 1.15118 0.83235 0.80017 0.77585 1.90859 1.22670 1.73404 1.56891 1.49208 1.04403 1.07525 1.78457 1.23272 0.79873 0.97703 1.00977 1.22703 0.92823 0.94336 1.00296 0.87837 1.22239 0.92500 1.02047 0.99434 1.22961 1.04205 0.93857 1.00256 1.22955 0.94856 0.99892 1.03858 1.21918 0.94275 0.80328 0.93939 0.89060 1.22363 1.00034 0.98499 0.97253 1.22920 1.03714 0.90361 1.03339 1.22952 0.95002 1.02201 1.00324 1.77244 0.99926 1.08306 1.30079 1.48949 1.00894 1.07704 1.52567 1.19666 0.95928 0.71400 0.98868 1.21329 1.46598 0.97895 0.91435 0.91794 1.24927 0.94733 0.96096 0.98085 1.69923 1.45080 1.07059 1.30977 0.86358 0.77979 0.78559 0.83805 1.20373 1.20886 1.19681 0.90478 0.90902 0.90864 0.82312 0.76138 0.89614 0.90033 0.86888 0.88813 0.88764 0.88682 0.88767 0.87371 0.88576 0.88653 0.88844 0.87986 0.93072 0.92809 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 10.11 36.01 0.36 -1.11 16 2 C 0.09 1.98 6.92 -82.28 -0.57 1.41 16 3 C -0.29 -6.25 9.52 -39.83 -0.38 -6.63 16 4 C 0.28 6.09 8.11 -154.36 -1.25 4.83 16 5 N -0.64 -10.96 5.45 -15.51 -0.08 -11.05 16 6 C 0.74 12.05 8.73 -86.92 -0.76 11.29 16 7 O -0.56 -10.99 14.20 5.28 0.08 -10.92 16 8 N -0.66 -7.63 3.42 -176.32 -0.60 -8.23 16 9 C 0.10 0.81 7.75 -2.84 -0.02 0.79 16 10 C -0.08 -0.55 3.94 -89.70 -0.35 -0.90 16 11 H 0.10 0.67 8.12 -51.93 -0.42 0.25 16 12 C -0.14 -0.76 4.98 -90.62 -0.45 -1.21 16 13 C -0.18 -0.86 10.24 -26.69 -0.27 -1.13 16 14 C -0.18 -0.86 10.25 -26.70 -0.27 -1.14 16 15 C 0.20 1.81 4.39 -66.87 -0.29 1.52 16 16 H 0.09 0.91 8.13 -51.93 -0.42 0.48 16 17 C -0.16 -1.33 4.16 -90.62 -0.38 -1.71 16 18 C -0.17 -1.16 10.25 -26.69 -0.27 -1.44 16 19 C -0.17 -1.61 10.26 -26.69 -0.27 -1.89 16 20 N -0.32 -7.77 12.59 31.44 0.40 -7.38 16 21 N -0.32 -7.79 3.59 -58.33 -0.21 -8.00 16 22 C 0.26 6.78 5.99 -5.19 -0.03 6.75 16 23 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 24 H 0.06 1.85 7.81 -52.48 -0.41 1.44 16 25 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 26 N -0.89 -25.34 13.29 55.43 0.74 -24.60 16 27 Si 0.91 21.39 29.54 -169.99 -5.02 16.37 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 30 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 31 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.07 1.29 7.07 -51.93 -0.37 0.92 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.16 3.40 5.91 -52.49 -0.31 3.09 16 35 H 0.40 5.78 8.43 -40.82 -0.34 5.43 16 36 H 0.09 0.59 8.04 -51.93 -0.42 0.17 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.11 0.59 6.10 -51.93 -0.32 0.28 16 39 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.45 8.14 -51.92 -0.42 0.03 16 42 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.11 0.80 6.91 -51.93 -0.36 0.45 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 49 H 0.05 1.39 7.04 -51.93 -0.37 1.02 16 50 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 413.44 15.07 6.23 6.23 Total: -1.00 -33.25 413.44 -12.06 -45.31 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -7.94 Total: 6.41 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -5.64 Total: -4.15 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: 0.23 Total: -59.26 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.92 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.25 -12.06 -45.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565464320.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.781 kcal (2) G-P(sol) polarization free energy of solvation -33.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds