Wall clock time and date at job start Wed Apr 1 2020 03:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35247 * 126.06601 * 2 1 4 4 C 1.40400 * 107.86378 * 179.97438 * 3 2 1 5 5 N 1.40194 * 125.97172 * 180.02562 * 4 3 2 6 6 C 1.34775 * 120.00068 * 0.02562 * 5 4 3 7 7 O 1.21594 * 119.99950 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99967 * 180.02562 * 6 5 4 9 9 C 1.47808 * 134.45871 * 359.86192 * 8 6 5 10 10 C 1.53949 * 86.04003 * 204.64796 * 9 8 6 11 11 H 1.08997 * 113.73905 * 90.88257 * 10 9 8 12 12 C 1.52996 * 113.74143 * 222.08463 * 10 9 8 13 13 C 1.53002 * 117.49888 * 209.99360 * 12 10 9 14 14 C 1.53000 * 117.50107 * 278.65122 * 12 10 9 15 15 C 1.47578 * 134.49106 * 180.02562 * 8 6 5 16 16 H 1.09003 * 113.77509 * 41.05212 * 15 8 6 17 17 C 1.52999 * 113.76985 * 269.65451 * 15 8 6 18 18 C 1.53004 * 117.50198 * 152.25342 * 17 15 8 19 19 C 1.53004 * 117.49890 * 83.59145 * 17 15 8 20 20 N 1.31210 * 108.05500 * 0.26240 * 4 3 2 21 21 N 1.34965 * 126.07398 * 179.97438 * 2 1 3 22 22 C 1.46501 * 125.97091 * 0.02562 * 21 2 1 23 23 C 1.50702 * 109.47074 * 90.00232 * 22 21 2 24 24 H 1.08006 * 119.99571 * 359.97438 * 23 22 21 25 25 C 1.37870 * 120.00417 * 179.97438 * 23 22 21 26 26 N 1.31517 * 119.99567 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00419 * 180.02562 * 25 23 22 28 28 H 1.48490 * 109.47342 * 89.99990 * 27 25 23 29 29 H 1.48502 * 109.46976 * 210.00012 * 27 25 23 30 30 H 1.48499 * 109.47090 * 329.99638 * 27 25 23 31 31 H 1.09003 * 109.46787 * 90.02651 * 1 2 3 32 32 H 1.09002 * 109.47085 * 210.02211 * 1 2 3 33 33 H 1.08998 * 109.47528 * 330.02712 * 1 2 3 34 34 H 1.07999 * 126.06787 * 359.97438 * 3 2 1 35 35 H 0.97003 * 120.00096 * 179.97438 * 5 4 3 36 36 H 1.09001 * 113.76989 * 90.38349 * 9 8 6 37 37 H 1.09004 * 113.83763 * 318.91950 * 9 8 6 38 38 H 1.09002 * 115.54951 * 64.32333 * 12 10 9 39 39 H 1.09000 * 117.49996 * 215.00804 * 13 12 10 40 40 H 1.08999 * 117.49664 * 0.02562 * 13 12 10 41 41 H 1.09008 * 117.49673 * 359.97438 * 14 12 10 42 42 H 1.08999 * 117.49942 * 144.97366 * 14 12 10 43 43 H 1.08997 * 115.54990 * 297.92295 * 17 15 8 44 44 H 1.09001 * 117.49522 * 359.97438 * 18 17 15 45 45 H 1.09000 * 117.50134 * 145.02091 * 18 17 15 46 46 H 1.08993 * 117.49822 * 214.98044 * 19 17 15 47 47 H 1.09003 * 117.49498 * 359.97438 * 19 17 15 48 48 H 1.09001 * 109.46964 * 209.99760 * 22 21 2 49 49 H 1.08994 * 109.47755 * 330.00415 * 22 21 2 50 50 H 0.97004 * 120.00121 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0933 0.0000 4 6 3.6370 0.6547 0.0006 5 7 4.7737 1.4753 0.0013 6 6 4.6369 2.8161 0.0020 7 8 3.5276 3.3140 0.0015 8 7 5.7297 3.6049 0.0021 9 6 7.1865 3.3555 0.0042 10 6 7.3166 4.7502 0.6428 11 1 7.2976 4.7374 1.7326 12 6 8.4687 5.5822 0.0761 13 6 9.1357 6.5939 1.0102 14 6 9.8720 5.3095 0.6213 15 6 5.9520 5.0639 0.0032 16 1 5.2749 5.6111 0.6591 17 6 6.0526 5.6734 -1.3965 18 6 5.6375 7.1368 -1.5613 19 6 4.7453 6.0210 -2.1113 20 7 3.6336 -0.6574 -0.0048 21 7 2.3017 -1.0909 0.0005 22 6 1.8501 -2.4845 0.0006 23 6 1.6958 -2.9627 -1.4202 24 1 1.9121 -2.2950 -2.2411 25 6 1.2786 -4.2523 -1.6722 26 7 1.0157 -5.0655 -0.6725 27 14 1.0880 -4.8452 -3.4333 28 1 2.3695 -5.4335 -3.8990 29 1 0.0192 -5.8743 -3.4962 30 1 0.7237 -3.6993 -4.3047 31 1 -0.3633 -0.0005 -1.0277 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3634 0.8902 0.5134 34 1 1.9719 2.1212 -0.0004 35 1 5.6586 1.0781 0.0021 36 1 7.6219 3.2864 -0.9927 37 1 7.4931 2.5413 0.6610 38 1 8.3811 5.8508 -0.9767 39 1 9.4870 7.5281 0.5720 40 1 8.7540 6.6664 2.0286 41 1 9.9744 4.5376 1.3841 42 1 10.7076 5.3982 -0.0729 43 1 6.8800 5.3131 -2.0077 44 1 5.2922 7.6651 -0.6726 45 1 6.1915 7.7391 -2.2813 46 1 4.7127 5.8898 -3.1928 47 1 3.8135 5.8150 -1.5845 48 1 2.5846 -3.1044 0.5148 49 1 0.8913 -2.5558 0.5140 50 1 0.7218 -5.9728 -0.8497 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565464320.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:27 Heat of formation + Delta-G solvation = 121.860280 kcal Electronic energy + Delta-G solvation = -29688.262648 eV Core-core repulsion = 25719.730267 eV Total energy + Delta-G solvation = -3968.532381 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.38410 -41.72962 -39.86537 -37.56835 -36.81965 -36.27687 -35.27903 -33.10535 -32.65879 -30.57843 -28.45547 -27.88886 -27.44564 -25.25440 -24.36984 -23.23060 -23.16729 -22.91266 -22.20911 -21.24781 -20.70921 -19.43172 -18.89517 -18.74549 -17.82542 -17.24628 -17.08607 -16.82602 -16.33952 -16.13368 -15.85134 -15.66227 -15.52944 -14.95399 -14.67183 -14.55681 -14.35019 -14.02736 -13.82246 -13.74380 -13.53411 -13.38435 -13.13535 -12.98682 -12.84567 -12.68591 -12.43893 -12.36431 -12.26628 -12.22530 -12.11499 -11.84445 -11.58450 -11.37366 -11.30627 -11.29543 -11.06463 -10.83936 -10.74048 -10.60386 -9.85613 -9.56492 -9.07524 -8.33055 -6.50858 0.94357 1.00850 1.37059 1.37737 1.49400 1.64435 1.89899 2.33146 2.37053 2.69008 2.84620 2.96211 3.00392 3.48089 3.68854 3.73644 3.83505 4.00830 4.06971 4.09663 4.14754 4.17597 4.29007 4.37661 4.43158 4.45204 4.50773 4.56937 4.65920 4.70370 4.71794 4.81744 4.85969 4.88388 4.95765 4.97284 5.00687 5.02356 5.13893 5.18456 5.21352 5.24217 5.27723 5.30327 5.41180 5.48288 5.53188 5.80509 5.93066 6.02515 6.25798 6.60716 6.72340 7.07595 7.19861 7.39996 8.72704 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.002152 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.210413 B =13005.270336 C =13363.896543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.088 3.912 3 C -0.299 4.299 4 C 0.293 3.707 5 N -0.635 5.635 6 C 0.731 3.269 7 O -0.602 6.602 8 N -0.655 5.655 9 C 0.101 3.899 10 C -0.062 4.062 11 H 0.107 0.893 12 C -0.144 4.144 13 C -0.176 4.176 14 C -0.176 4.176 15 C 0.191 3.809 16 H 0.079 0.921 17 C -0.159 4.159 18 C -0.139 4.139 19 C -0.194 4.194 20 N -0.360 5.360 21 N -0.343 5.343 22 C 0.275 3.725 23 C -0.552 4.552 24 H 0.048 0.952 25 C 0.023 3.977 26 N -0.917 5.917 27 Si 0.971 3.029 28 H -0.274 1.274 29 H -0.269 1.269 30 H -0.271 1.271 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.163 0.837 35 H 0.417 0.583 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.119 0.881 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.123 0.877 44 H 0.100 0.900 45 H 0.117 0.883 46 H 0.094 0.906 47 H 0.070 0.930 48 H 0.025 0.975 49 H 0.053 0.947 50 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.260 25.437 1.545 30.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.042 4.042 3 C -0.330 4.330 4 C 0.038 3.962 5 N -0.286 5.286 6 C 0.434 3.566 7 O -0.480 6.480 8 N -0.393 5.393 9 C -0.020 4.020 10 C -0.081 4.081 11 H 0.125 0.875 12 C -0.163 4.163 13 C -0.212 4.212 14 C -0.213 4.213 15 C 0.088 3.912 16 H 0.097 0.903 17 C -0.178 4.178 18 C -0.177 4.177 19 C -0.232 4.232 20 N -0.191 5.191 21 N -0.125 5.125 22 C 0.157 3.843 23 C -0.591 4.591 24 H 0.066 0.934 25 C -0.179 4.179 26 N -0.556 5.556 27 Si 0.795 3.205 28 H -0.200 1.200 29 H -0.194 1.194 30 H -0.195 1.195 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.123 0.877 34 H 0.180 0.820 35 H 0.253 0.747 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.137 0.863 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.119 0.881 43 H 0.141 0.859 44 H 0.119 0.881 45 H 0.135 0.865 46 H 0.113 0.887 47 H 0.089 0.911 48 H 0.043 0.957 49 H 0.071 0.929 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.917 24.318 1.623 29.109 hybrid contribution -0.374 -0.517 -0.766 0.997 sum 15.543 23.801 0.857 28.440 Atomic orbital electron populations 1.20463 0.85272 1.04222 1.03931 1.21725 0.96657 0.86397 0.99437 1.21364 0.90004 0.99775 1.21835 1.18951 0.87997 0.88921 1.00360 1.41359 1.06898 1.03754 1.76609 1.15363 0.84035 0.79745 0.77463 1.90815 1.24700 1.73896 1.58590 1.49413 1.04944 1.08442 1.76509 1.23616 0.76980 0.98988 1.02420 1.22544 0.91773 0.93516 1.00300 0.87454 1.22143 0.92094 1.02300 0.99716 1.23030 1.03855 0.94199 1.00161 1.23015 0.94544 0.99862 1.03855 1.22211 0.95425 0.78760 0.94802 0.90305 1.22404 0.99327 0.99606 0.96437 1.23000 1.01642 0.89642 1.03407 1.22870 0.94576 1.05492 1.00220 1.77162 1.00101 1.09567 1.32229 1.48771 1.01611 1.07493 1.54626 1.19254 0.94944 0.72324 0.97810 1.21424 1.47550 0.98355 0.91732 0.93386 1.25732 0.93948 0.95911 1.02261 1.70002 1.45088 1.07517 1.32955 0.85354 0.78308 0.78172 0.78644 1.19953 1.19397 1.19535 0.89834 0.91089 0.87691 0.81999 0.74656 0.88009 0.88751 0.86329 0.88066 0.88781 0.88592 0.88058 0.85923 0.88124 0.86452 0.88746 0.91100 0.95719 0.92914 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.85 10.11 71.24 0.72 -2.13 16 2 C 0.09 3.93 6.92 41.39 0.29 4.21 16 3 C -0.30 -13.18 9.52 22.11 0.21 -12.97 16 4 C 0.29 12.82 8.11 133.31 1.08 13.90 16 5 N -0.64 -21.83 5.45 -321.23 -1.75 -23.58 16 6 C 0.73 24.03 8.73 179.05 1.56 25.59 16 7 O -0.60 -24.11 14.20 -4.01 -0.06 -24.17 16 8 N -0.66 -14.71 3.42 -830.00 -2.84 -17.55 16 9 C 0.10 1.35 7.75 86.44 0.67 2.02 16 10 C -0.06 -0.69 3.94 -10.14 -0.04 -0.73 16 11 H 0.11 1.15 8.12 -2.39 -0.02 1.13 16 12 C -0.14 -1.09 4.98 -10.79 -0.05 -1.15 16 13 C -0.18 -1.21 10.24 30.62 0.31 -0.90 16 14 C -0.18 -1.18 10.25 30.62 0.31 -0.87 16 15 C 0.19 3.26 4.39 45.09 0.20 3.46 16 16 H 0.08 1.55 8.13 -2.39 -0.02 1.53 16 17 C -0.16 -2.35 4.16 -10.79 -0.04 -2.39 16 18 C -0.14 -1.68 10.25 30.62 0.31 -1.37 16 19 C -0.19 -3.72 10.26 30.62 0.31 -3.40 16 20 N -0.36 -17.72 12.59 -54.44 -0.69 -18.41 16 21 N -0.34 -17.26 3.59 -338.44 -1.22 -18.48 16 22 C 0.28 14.94 5.99 85.63 0.51 15.45 16 23 C -0.55 -31.62 9.39 25.60 0.24 -31.38 16 24 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 25 C 0.02 1.25 5.46 84.65 0.46 1.71 16 26 N -0.92 -52.39 13.29 21.45 0.28 -52.11 16 27 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 28 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 29 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 30 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 31 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 32 H 0.07 2.52 7.07 -2.39 -0.02 2.50 16 33 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 34 H 0.16 7.06 5.91 -2.91 -0.02 7.05 16 35 H 0.42 11.79 8.43 -92.71 -0.78 11.01 16 36 H 0.10 1.10 8.04 -2.39 -0.02 1.08 16 37 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.12 0.82 6.10 -2.39 -0.01 0.81 16 39 H 0.10 0.57 8.14 -2.39 -0.02 0.56 16 40 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 42 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.12 1.48 6.91 -2.39 -0.02 1.47 16 44 H 0.10 1.14 8.14 -2.39 -0.02 1.13 16 45 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.02 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.05 2.82 7.04 -2.39 -0.02 2.80 16 50 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -73.76 413.44 2.99 -70.77 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.17 Total: 28.71 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 7.06 Total: 9.08 kcal Atomic # 7 Polarization: -123.92 SS G_CDS: -6.21 Total: -130.13 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.06 Total: -24.17 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -73.76 2.99 -70.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565464320.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.631 kcal (2) G-P(sol) polarization free energy of solvation -73.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds