Wall clock time and date at job start Wed Apr 1 2020 03:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35238 * 126.07197 * 2 1 4 4 C 1.40408 * 107.86839 * 179.97438 * 3 2 1 5 5 N 1.40195 * 125.96941 * 179.97438 * 4 3 2 6 6 C 1.34771 * 120.00449 * 0.02562 * 5 4 3 7 7 O 1.21592 * 120.00228 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99871 * 179.97438 * 6 5 4 9 9 C 1.47574 * 134.49478 * 5.51372 * 8 6 5 10 10 C 1.53944 * 86.11712 * 204.63768 * 9 8 6 11 11 H 1.08999 * 113.74297 * 90.73482 * 10 9 8 12 12 C 1.53001 * 113.74114 * 222.04442 * 10 9 8 13 13 C 1.52998 * 117.49801 * 225.41676 * 12 10 9 14 14 C 1.53005 * 117.49822 * 156.75884 * 12 10 9 15 15 C 1.47585 * 134.48916 * 185.50936 * 8 6 5 16 16 H 1.09005 * 113.86947 * 269.67752 * 15 8 6 17 17 C 1.52997 * 113.77175 * 41.05770 * 15 8 6 18 18 C 1.53006 * 117.49790 * 110.94564 * 17 15 8 19 19 C 1.52999 * 117.49530 * 42.28546 * 17 15 8 20 20 N 1.31209 * 108.05179 * 0.26434 * 4 3 2 21 21 N 1.34967 * 126.06997 * 179.97438 * 2 1 3 22 22 C 1.46505 * 125.97453 * 0.02562 * 21 2 1 23 23 C 1.50707 * 109.46775 * 89.99856 * 22 21 2 24 24 H 1.07993 * 120.00276 * 359.97438 * 23 22 21 25 25 C 1.37875 * 119.99677 * 180.02562 * 23 22 21 26 26 N 1.31513 * 120.00122 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00062 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47187 * 89.99791 * 27 25 23 29 29 H 1.48502 * 109.47466 * 209.99884 * 27 25 23 30 30 H 1.48503 * 109.46905 * 330.00029 * 27 25 23 31 31 H 1.08999 * 109.46897 * 90.02203 * 1 2 3 32 32 H 1.08996 * 109.47149 * 210.02761 * 1 2 3 33 33 H 1.09003 * 109.46865 * 330.02278 * 1 2 3 34 34 H 1.08001 * 126.06920 * 359.97438 * 3 2 1 35 35 H 0.97001 * 119.99449 * 180.02562 * 5 4 3 36 36 H 1.08997 * 113.77676 * 90.33334 * 9 8 6 37 37 H 1.08998 * 113.87036 * 318.94772 * 9 8 6 38 38 H 1.09000 * 115.55127 * 11.09174 * 12 10 9 39 39 H 1.08995 * 117.50396 * 0.02562 * 13 12 10 40 40 H 1.09007 * 117.49664 * 145.01985 * 13 12 10 41 41 H 1.08993 * 117.49933 * 214.98154 * 14 12 10 42 42 H 1.08998 * 117.49589 * 0.02562 * 14 12 10 43 43 H 1.08997 * 115.55123 * 256.61850 * 17 15 8 44 44 H 1.08996 * 117.49501 * 359.97438 * 18 17 15 45 45 H 1.08991 * 117.49526 * 145.02171 * 18 17 15 46 46 H 1.09005 * 117.49879 * 214.97438 * 19 17 15 47 47 H 1.09004 * 117.50225 * 0.02562 * 19 17 15 48 48 H 1.08996 * 109.47170 * 209.99181 * 22 21 2 49 49 H 1.08996 * 109.46950 * 330.00029 * 22 21 2 50 50 H 0.97006 * 120.00050 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6545 0.0006 5 7 4.7738 1.4751 0.0003 6 6 4.6371 2.8158 -0.0001 7 8 3.5278 3.3139 0.0002 8 7 5.7299 3.6046 0.0001 9 6 7.1818 3.3603 -0.1004 10 6 7.3525 4.7004 0.6378 11 1 7.3937 4.6018 1.7225 12 6 8.4731 5.5761 0.0736 13 6 9.4277 6.2325 1.0729 14 6 8.3914 7.0819 0.3327 15 6 5.9551 5.0597 0.1008 16 1 5.9724 5.5711 -0.8617 17 6 5.0588 5.7528 1.1290 18 6 5.7258 6.3013 2.3920 19 6 4.8487 5.0492 2.4712 20 7 3.6336 -0.6576 -0.0048 21 7 2.3017 -1.0909 0.0005 22 6 1.8500 -2.4846 0.0006 23 6 1.6957 -2.9627 -1.4203 24 1 1.9119 -2.2951 -2.2412 25 6 1.2774 -4.2521 -1.6721 26 7 1.0136 -5.0649 -0.6725 27 14 1.0853 -4.8445 -3.4333 28 1 2.3662 -5.4335 -3.8999 29 1 0.0158 -5.8728 -3.4958 30 1 0.7214 -3.6981 -4.3042 31 1 -0.3633 -0.0004 -1.0277 32 1 -0.3633 -0.8897 0.5142 33 1 -0.3633 0.8902 0.5135 34 1 1.9721 2.1211 -0.0004 35 1 5.6587 1.0778 0.0004 36 1 7.5595 3.3707 -1.1228 37 1 7.5245 2.4975 0.4707 38 1 8.8884 5.2514 -0.8804 39 1 9.2577 6.0403 2.1322 40 1 10.4711 6.3400 0.7762 41 1 8.7533 7.7477 -0.4507 42 1 7.5396 7.4485 0.9054 43 1 4.2198 6.3146 0.7184 44 1 6.8031 6.1679 2.4906 45 1 5.3254 7.2236 2.8126 46 1 3.8715 5.1485 2.9440 47 1 5.3493 4.0927 2.6220 48 1 2.5845 -3.1045 0.5146 49 1 0.8912 -2.5558 0.5141 50 1 0.7196 -5.9722 -0.8497 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565464321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:31 Heat of formation + Delta-G solvation = 143.492511 kcal Electronic energy + Delta-G solvation = -29989.839793 eV Core-core repulsion = 26022.245456 eV Total energy + Delta-G solvation = -3967.594337 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.29149 -40.43898 -38.67691 -36.87616 -36.02479 -34.64682 -33.31437 -31.44401 -30.85914 -29.45348 -27.14482 -26.49912 -26.24144 -24.00401 -22.93177 -22.82087 -22.45269 -21.81555 -20.96295 -19.83539 -19.63689 -18.59158 -17.36128 -16.66698 -16.62742 -16.39387 -15.89272 -15.40744 -15.28825 -14.80032 -14.78846 -14.28951 -14.20569 -13.97393 -13.65181 -13.21218 -12.95359 -12.86953 -12.44729 -12.41436 -12.23639 -12.11059 -11.92543 -11.78133 -11.61595 -11.49226 -11.35454 -11.26825 -11.07076 -10.81276 -10.69284 -10.58708 -10.43222 -10.38615 -10.21356 -10.15569 -9.84911 -9.51996 -9.48624 -8.81976 -8.62054 -7.85659 -7.34354 -6.22977 -4.30368 2.16980 2.70696 3.15828 3.22822 3.23284 3.29088 3.33225 3.39395 3.72528 3.88201 3.99607 4.12715 4.28863 4.33336 4.45715 4.48231 4.66246 4.72323 4.75156 4.83240 4.90107 5.03598 5.10556 5.11158 5.17155 5.27846 5.38465 5.39547 5.45746 5.53864 5.59100 5.71568 5.74532 5.76828 5.80163 5.84498 5.96631 5.98597 6.05782 6.15672 6.32669 6.51273 6.66597 6.80413 6.96583 7.08735 7.28984 7.59940 7.70078 7.92112 8.03209 8.11777 8.69815 8.72990 8.79985 9.35696 10.84102 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021196 B = 0.002179 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.689652 B =12846.213797 C =13557.918503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.090 3.910 3 C -0.289 4.289 4 C 0.284 3.716 5 N -0.643 5.643 6 C 0.738 3.262 7 O -0.557 6.557 8 N -0.658 5.658 9 C 0.103 3.897 10 C -0.091 4.091 11 H 0.107 0.893 12 C -0.146 4.146 13 C -0.178 4.178 14 C -0.178 4.178 15 C 0.200 3.800 16 H 0.098 0.902 17 C -0.153 4.153 18 C -0.179 4.179 19 C -0.157 4.157 20 N -0.325 5.325 21 N -0.319 5.319 22 C 0.259 3.741 23 C -0.534 4.534 24 H 0.064 0.936 25 C 0.065 3.935 26 N -0.892 5.892 27 Si 0.906 3.094 28 H -0.278 1.278 29 H -0.283 1.283 30 H -0.272 1.272 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.160 0.840 35 H 0.404 0.596 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.109 0.891 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.094 0.906 47 H 0.091 0.909 48 H 0.051 0.949 49 H 0.054 0.946 50 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.287 23.750 4.827 28.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 C -0.320 4.320 4 C 0.031 3.969 5 N -0.292 5.292 6 C 0.440 3.560 7 O -0.431 6.431 8 N -0.399 5.399 9 C -0.020 4.020 10 C -0.110 4.110 11 H 0.125 0.875 12 C -0.165 4.165 13 C -0.215 4.215 14 C -0.214 4.214 15 C 0.097 3.903 16 H 0.115 0.885 17 C -0.172 4.172 18 C -0.216 4.216 19 C -0.194 4.194 20 N -0.156 5.156 21 N -0.101 5.101 22 C 0.141 3.859 23 C -0.573 4.573 24 H 0.082 0.918 25 C -0.138 4.138 26 N -0.530 5.530 27 Si 0.733 3.267 28 H -0.204 1.204 29 H -0.209 1.209 30 H -0.197 1.197 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.177 0.823 35 H 0.238 0.762 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.128 0.872 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.120 0.880 43 H 0.127 0.873 44 H 0.115 0.885 45 H 0.113 0.887 46 H 0.112 0.888 47 H 0.109 0.891 48 H 0.069 0.931 49 H 0.072 0.928 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.876 22.602 4.863 26.964 hybrid contribution -0.013 -0.156 -1.109 1.120 sum 13.863 22.446 3.754 26.647 Atomic orbital electron populations 1.20322 0.87972 1.02738 1.03103 1.21047 0.94849 0.87189 1.01021 1.21223 0.89692 0.99762 1.21297 1.18664 0.86555 0.89217 1.02485 1.41364 1.07438 1.03654 1.76784 1.15069 0.83238 0.79941 0.77704 1.90863 1.22594 1.73272 1.56417 1.49138 1.04617 1.07826 1.78305 1.23227 0.80003 0.98134 1.00636 1.22933 0.92847 0.94457 1.00770 0.87542 1.22185 0.99325 0.94441 1.00506 1.23014 0.96117 1.04534 0.97814 1.23055 1.01891 0.92930 1.03562 1.22173 0.90606 0.79930 0.97632 0.88463 1.22272 1.01622 1.03887 0.89419 1.23135 0.99172 0.98410 1.00871 1.22774 1.01185 0.96108 0.99322 1.77244 0.99916 1.08335 1.30115 1.48947 1.00899 1.07693 1.52606 1.19663 0.95915 0.71417 0.98856 1.21330 1.46572 0.97913 0.91441 0.91794 1.24928 0.94729 0.96104 0.98080 1.69922 1.45072 1.07067 1.30978 0.86361 0.77980 0.78559 0.83812 1.20371 1.20887 1.19680 0.90492 0.90917 0.90881 0.82294 0.76223 0.89523 0.90012 0.87234 0.88775 0.88795 0.88785 0.88050 0.87304 0.88477 0.88747 0.88758 0.89070 0.93085 0.92828 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 10.11 36.01 0.36 -1.11 16 2 C 0.09 1.97 6.92 -82.28 -0.57 1.40 16 3 C -0.29 -6.21 9.52 -39.83 -0.38 -6.59 16 4 C 0.28 6.06 8.11 -154.36 -1.25 4.81 16 5 N -0.64 -10.86 5.45 -15.50 -0.08 -10.94 16 6 C 0.74 11.82 8.37 -86.92 -0.73 11.09 16 7 O -0.56 -10.68 13.77 5.28 0.07 -10.60 16 8 N -0.66 -7.47 3.12 -176.56 -0.55 -8.02 16 9 C 0.10 0.77 8.01 -2.98 -0.02 0.75 16 10 C -0.09 -0.59 2.66 -89.70 -0.24 -0.83 16 11 H 0.11 0.71 5.88 -51.93 -0.31 0.41 16 12 C -0.15 -0.74 5.55 -90.62 -0.50 -1.25 16 13 C -0.18 -0.83 10.22 -26.69 -0.27 -1.10 16 14 C -0.18 -0.86 9.93 -26.69 -0.27 -1.13 16 15 C 0.20 1.78 4.14 -66.86 -0.28 1.51 16 16 H 0.10 0.83 8.10 -51.93 -0.42 0.41 16 17 C -0.15 -1.44 5.72 -90.62 -0.52 -1.96 16 18 C -0.18 -1.30 8.68 -26.69 -0.23 -1.53 16 19 C -0.16 -1.59 9.38 -26.69 -0.25 -1.84 16 20 N -0.33 -7.76 12.59 31.44 0.40 -7.36 16 21 N -0.32 -7.78 3.59 -58.32 -0.21 -7.99 16 22 C 0.26 6.78 5.99 -5.19 -0.03 6.75 16 23 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 24 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 25 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 26 N -0.89 -25.34 13.29 55.43 0.74 -24.60 16 27 Si 0.91 21.39 29.54 -169.99 -5.02 16.36 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 30 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 31 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.07 1.29 7.07 -51.93 -0.37 0.92 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.16 3.38 5.91 -52.49 -0.31 3.07 16 35 H 0.40 5.71 8.43 -40.82 -0.34 5.37 16 36 H 0.09 0.55 7.97 -51.93 -0.41 0.13 16 37 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 38 H 0.11 0.51 7.97 -51.93 -0.41 0.10 16 39 H 0.09 0.43 8.13 -51.93 -0.42 0.00 16 40 H 0.09 0.39 8.14 -51.92 -0.42 -0.03 16 41 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.10 0.52 6.51 -51.93 -0.34 0.18 16 43 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.10 0.60 5.56 -51.93 -0.29 0.31 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.09 1.02 7.76 -51.93 -0.40 0.62 16 48 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 49 H 0.05 1.38 7.04 -51.93 -0.37 1.02 16 50 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 406.56 15.07 6.13 6.13 Total: -1.00 -33.13 406.56 -11.87 -45.00 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.74 Total: 6.66 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -5.60 Total: -4.62 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.29 Total: -58.92 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.07 Total: -10.60 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.13 -11.87 -45.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565464321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.491 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds