Wall clock time and date at job start Wed Apr 1 2020 03:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99879 * 2 1 4 4 C 1.53002 * 109.46949 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.47015 * 68.53367 * 4 3 2 6 6 C 1.46898 * 111.00176 * 298.27433 * 5 4 3 7 7 C 1.50705 * 109.46692 * 300.32069 * 6 5 4 8 8 H 1.07997 * 119.99961 * 4.75692 * 7 6 5 9 9 C 1.37881 * 119.99480 * 184.74734 * 7 6 5 10 10 N 1.31522 * 119.99559 * 180.02562 * 9 7 6 11 11 Si 1.86791 * 120.00524 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47638 * 89.99358 * 11 9 7 13 13 H 1.48498 * 109.47128 * 210.00046 * 11 9 7 14 14 H 1.48504 * 109.46899 * 329.99609 * 11 9 7 15 15 C 1.46901 * 110.99702 * 62.22762 * 5 4 3 16 16 C 1.50693 * 109.47402 * 76.08730 * 15 5 4 17 17 C 1.39954 * 126.01987 * 82.35612 * 16 15 5 18 18 C 1.50696 * 125.81188 * 0.02562 * 17 16 15 19 19 N 1.30811 * 108.37152 * 180.02562 * 17 16 15 20 20 N 1.40098 * 108.25513 * 359.97438 * 19 17 16 21 21 C 1.39813 * 126.10269 * 179.97438 * 20 19 17 22 22 C 1.38952 * 119.69096 * 335.02663 * 21 20 19 23 23 C 1.38413 * 119.10633 * 180.25248 * 22 21 20 24 24 C 1.38794 * 118.48586 * 359.48122 * 23 22 21 25 25 C 1.38129 * 119.29254 * 0.49981 * 24 23 22 26 26 N 1.31896 * 120.83781 * 359.76234 * 25 24 23 27 27 C 1.35289 * 126.01467 * 262.64323 * 16 15 5 28 28 C 1.50695 * 126.19337 * 0.02893 * 27 16 15 29 29 H 1.09000 * 109.46694 * 60.00037 * 1 2 3 30 30 H 1.08997 * 109.47174 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47084 * 300.00566 * 1 2 3 32 32 H 1.08994 * 109.47695 * 59.99771 * 3 2 1 33 33 H 1.08999 * 109.46866 * 299.99462 * 3 2 1 34 34 H 1.09001 * 109.47339 * 308.53564 * 4 3 2 35 35 H 1.09000 * 109.47282 * 188.53347 * 4 3 2 36 36 H 1.08998 * 109.47195 * 60.32270 * 6 5 4 37 37 H 1.08995 * 109.47271 * 180.32570 * 6 5 4 38 38 H 0.96995 * 119.99944 * 180.02562 * 10 9 7 39 39 H 1.09005 * 109.46900 * 316.08165 * 15 5 4 40 40 H 1.09006 * 109.46602 * 196.08652 * 15 5 4 41 41 H 1.09004 * 109.47367 * 270.00294 * 18 17 16 42 42 H 1.09008 * 109.47424 * 30.00551 * 18 17 16 43 43 H 1.09002 * 109.47424 * 150.00644 * 18 17 16 44 44 H 1.08000 * 120.44483 * 359.97438 * 22 21 20 45 45 H 1.08000 * 120.75408 * 179.69991 * 23 22 21 46 46 H 1.07999 * 120.35445 * 180.21632 * 24 23 22 47 47 H 1.07993 * 119.58128 * 179.74880 * 25 24 23 48 48 H 1.09003 * 109.47497 * 275.16232 * 28 27 16 49 49 H 1.09002 * 109.47222 * 35.16136 * 28 27 16 50 50 H 1.08997 * 109.47506 * 155.16554 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9841 0.6405 -1.2880 6 6 3.4392 -0.7056 -1.5095 7 6 3.8989 -1.6216 -0.4045 8 1 4.4679 -1.2255 0.4236 9 6 3.5926 -2.9651 -0.4507 10 7 3.9933 -3.7644 0.5139 11 14 2.6088 -3.6502 -1.8831 12 1 3.5362 -4.0785 -2.9609 13 1 1.8118 -4.8159 -1.4236 14 1 1.6960 -2.6008 -2.4036 15 6 3.6275 1.5410 -2.3925 16 6 4.5678 2.7186 -2.4041 17 6 5.8468 2.7450 -2.9717 18 6 6.5217 1.5978 -3.6784 19 7 6.3566 3.9350 -2.7841 20 7 5.4183 4.7099 -2.0899 21 6 5.5799 6.0415 -1.6954 22 6 6.8579 6.5525 -1.5044 23 6 7.0036 7.8708 -1.1087 24 6 5.8611 8.6378 -0.9277 25 6 4.6220 8.0642 -1.1361 26 7 4.5146 6.8032 -1.5078 27 6 4.3262 3.9348 -1.8629 28 6 3.0716 4.3543 -1.1412 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8468 0.5179 0.8047 35 1 3.9779 2.1691 0.1531 36 1 2.3502 -0.6604 -1.5146 37 1 3.7916 -1.0871 -2.4677 38 1 3.7782 -4.7096 0.4812 39 1 2.6049 1.8937 -2.2580 40 1 3.7054 1.0045 -3.3382 41 1 7.0868 1.0082 -2.9565 42 1 5.7678 0.9682 -4.1512 43 1 7.1987 1.9872 -4.4388 44 1 7.7256 5.9281 -1.6584 45 1 7.9842 8.2940 -0.9479 46 1 5.9400 9.6709 -0.6227 47 1 3.7298 8.6555 -0.9926 48 1 2.3284 4.6853 -1.8667 49 1 2.6772 3.5093 -0.5769 50 1 3.3015 5.1719 -0.4581 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619844315.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:47 Heat of formation + Delta-G solvation = 100.644888 kcal Electronic energy + Delta-G solvation = -31129.031348 eV Core-core repulsion = 27159.578999 eV Total energy + Delta-G solvation = -3969.452350 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.68740 -40.12859 -38.22945 -35.89674 -34.27762 -32.96671 -32.57730 -31.94938 -30.66439 -29.44072 -28.45667 -27.54772 -26.55684 -25.62709 -24.54640 -23.80169 -23.05142 -22.19125 -19.95676 -19.84148 -18.90177 -17.71651 -16.80119 -16.66980 -16.24211 -16.05755 -15.97022 -15.56510 -14.95420 -14.49752 -14.37690 -14.16941 -13.87661 -13.74840 -13.57052 -13.50076 -13.11631 -13.04691 -12.89402 -12.43330 -12.30617 -12.27901 -12.19565 -11.85447 -11.76431 -11.64025 -11.31790 -11.09846 -11.00393 -10.58879 -10.46521 -10.42359 -10.31902 -10.12908 -10.00763 -9.82169 -9.67849 -9.03255 -8.96814 -8.74027 -8.33917 -8.05874 -7.11963 -5.83641 -3.75492 0.51646 0.87413 2.01027 2.15725 2.86331 3.41094 3.46729 3.48124 3.52066 4.09907 4.35268 4.38335 4.55076 4.61257 4.68634 4.73603 4.88294 4.94414 5.07935 5.21502 5.33484 5.38915 5.49196 5.52229 5.57536 5.59761 5.62741 5.64216 5.72072 5.78384 5.80962 5.82919 5.90924 5.92253 5.97030 6.06805 6.13573 6.13977 6.22862 6.25155 6.29790 6.34431 6.78230 6.79358 7.07114 7.16625 7.39813 7.42892 7.75018 7.81425 7.88142 8.08855 8.22217 8.86595 9.23050 9.80092 11.30520 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016642 B = 0.003039 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.076004 B = 9211.926272 C =10136.893438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.339 6.339 3 C 0.021 3.979 4 C 0.064 3.936 5 N -0.515 5.515 6 C 0.152 3.848 7 C -0.479 4.479 8 H 0.075 0.925 9 C 0.067 3.933 10 N -0.911 5.911 11 Si 0.872 3.128 12 H -0.281 1.281 13 H -0.292 1.292 14 H -0.267 1.267 15 C 0.120 3.880 16 C -0.199 4.199 17 C 0.121 3.879 18 C -0.071 4.071 19 N -0.298 5.298 20 N -0.335 5.335 21 C 0.382 3.618 22 C -0.165 4.165 23 C -0.054 4.054 24 C -0.193 4.193 25 C 0.128 3.872 26 N -0.503 5.503 27 C 0.104 3.896 28 C -0.092 4.092 29 H 0.029 0.971 30 H 0.080 0.920 31 H 0.031 0.969 32 H 0.038 0.962 33 H 0.042 0.958 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.026 0.974 37 H 0.014 0.986 38 H 0.259 0.741 39 H 0.037 0.963 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.145 0.855 45 H 0.142 0.858 46 H 0.139 0.861 47 H 0.164 0.836 48 H 0.079 0.921 49 H 0.083 0.917 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.332 23.914 -4.371 24.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.256 6.256 3 C -0.057 4.057 4 C -0.064 4.064 5 N -0.238 5.238 6 C 0.027 3.973 7 C -0.517 4.517 8 H 0.093 0.907 9 C -0.132 4.132 10 N -0.552 5.552 11 Si 0.700 3.300 12 H -0.207 1.207 13 H -0.218 1.218 14 H -0.192 1.192 15 C -0.010 4.010 16 C -0.209 4.209 17 C -0.047 4.047 18 C -0.129 4.129 19 N -0.117 5.117 20 N -0.113 5.113 21 C 0.155 3.845 22 C -0.188 4.188 23 C -0.080 4.080 24 C -0.213 4.213 25 C -0.030 4.030 26 N -0.217 5.217 27 C -0.018 4.018 28 C -0.150 4.150 29 H 0.047 0.953 30 H 0.099 0.901 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.116 0.884 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.032 0.968 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.163 0.837 45 H 0.160 0.840 46 H 0.157 0.843 47 H 0.181 0.819 48 H 0.098 0.902 49 H 0.101 0.899 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.461 23.947 -4.612 24.392 hybrid contribution -1.497 -0.213 -0.428 1.571 sum -1.036 23.734 -5.040 24.285 Atomic orbital electron populations 1.22699 0.83896 1.02206 0.98490 1.88527 1.17094 1.25615 1.94405 1.23390 0.97655 0.86047 0.98613 1.22206 0.89259 0.99828 0.95149 1.62119 1.59150 1.02921 0.99621 1.20481 0.95104 0.84754 0.96950 1.20888 1.32884 0.91515 1.06414 0.90695 1.24779 0.95776 0.96960 0.95711 1.69900 1.47788 1.04464 1.33028 0.86911 0.80904 0.78638 0.83501 1.20724 1.21819 1.19197 1.20416 0.93576 0.90578 0.96383 1.19896 0.97811 0.95333 1.07877 1.22441 0.93195 0.93076 0.96019 1.20230 1.00322 0.92940 0.99453 1.77391 1.12859 1.03945 1.17536 1.45462 1.13280 1.07137 1.45400 1.17713 0.89894 0.82547 0.94351 1.21708 0.97267 0.97094 1.02684 1.21516 0.99691 0.92644 0.94154 1.22124 0.93443 1.01786 1.03981 1.22552 0.97797 0.89086 0.93521 1.67063 1.32409 1.06615 1.15605 1.21099 0.90549 0.90844 0.99269 1.20637 0.92065 1.02470 0.99811 0.95277 0.90122 0.95071 0.94401 0.94054 0.88443 0.91587 0.95714 0.96796 0.93164 0.94470 0.90613 0.89259 0.89972 0.91439 0.83677 0.84046 0.84273 0.81884 0.90243 0.89876 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 101.05 1.11 1.50 16 2 O -0.34 -6.86 7.00 -35.23 -0.25 -7.11 16 3 C 0.02 0.37 4.48 37.16 0.17 0.53 16 4 C 0.06 1.22 5.15 -3.82 -0.02 1.20 16 5 N -0.52 -10.49 4.67 -237.51 -1.11 -11.60 16 6 C 0.15 3.62 3.19 -4.97 -0.02 3.61 16 7 C -0.48 -13.46 8.60 -34.44 -0.30 -13.76 16 8 H 0.08 2.31 6.72 -52.49 -0.35 1.96 16 9 C 0.07 1.96 5.47 -17.81 -0.10 1.86 16 10 N -0.91 -28.38 13.96 55.43 0.77 -27.61 16 11 Si 0.87 21.97 27.38 -169.99 -4.65 17.31 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.27 -6.46 6.68 56.52 0.38 -6.08 16 15 C 0.12 2.05 4.88 -4.98 -0.02 2.02 16 16 C -0.20 -3.27 5.12 -105.03 -0.54 -3.81 16 17 C 0.12 1.97 7.21 -82.39 -0.59 1.38 16 18 C -0.07 -0.98 10.26 36.00 0.37 -0.61 16 19 N -0.30 -4.92 12.10 33.68 0.41 -4.51 16 20 N -0.33 -5.27 3.78 -8.38 -0.03 -5.30 16 21 C 0.38 5.20 7.30 -154.37 -1.13 4.07 16 22 C -0.17 -1.86 9.74 -39.25 -0.38 -2.24 16 23 C -0.05 -0.42 10.17 -39.31 -0.40 -0.82 16 24 C -0.19 -1.32 10.11 -39.42 -0.40 -1.72 16 25 C 0.13 1.07 11.18 -17.56 -0.20 0.88 16 26 N -0.50 -6.06 8.00 -12.29 -0.10 -6.16 16 27 C 0.10 1.62 6.35 -81.87 -0.52 1.10 16 28 C -0.09 -1.18 8.83 36.00 0.32 -0.86 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.04 0.65 4.94 -51.93 -0.26 0.39 16 34 H 0.10 2.16 6.31 -51.93 -0.33 1.84 16 35 H 0.07 1.15 5.98 -51.93 -0.31 0.84 16 36 H 0.03 0.61 4.69 -51.93 -0.24 0.37 16 37 H 0.01 0.34 7.15 -51.93 -0.37 -0.03 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.04 0.61 5.06 -51.93 -0.26 0.34 16 40 H 0.08 1.27 7.18 -51.93 -0.37 0.90 16 41 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.08 1.09 7.43 -51.92 -0.39 0.71 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.15 1.65 7.91 -52.49 -0.41 1.23 16 45 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 46 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 47 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 48 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.08 1.06 3.81 -51.93 -0.20 0.87 16 50 H 0.08 0.97 6.61 -51.93 -0.34 0.63 16 LS Contribution 390.06 15.07 5.88 5.88 Total: -1.00 -34.57 390.06 -8.95 -43.52 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -7.23 Total: 1.24 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -2.64 Total: -5.67 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -0.06 Total: -55.17 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.25 Total: -7.11 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.65 Total: 17.31 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.57 -8.95 -43.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619844315.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.163 kcal (2) G-P(sol) polarization free energy of solvation -34.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds