Wall clock time and date at job start Wed Apr 1 2020 03:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99879 * 2 1 4 4 C 1.53002 * 109.46949 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.47015 * 68.53367 * 4 3 2 6 6 C 1.46898 * 111.00176 * 298.27433 * 5 4 3 7 7 C 1.50705 * 109.46692 * 300.32069 * 6 5 4 8 8 H 1.07997 * 119.99961 * 4.75692 * 7 6 5 9 9 C 1.37881 * 119.99480 * 184.74734 * 7 6 5 10 10 N 1.31522 * 119.99559 * 180.02562 * 9 7 6 11 11 Si 1.86791 * 120.00524 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47638 * 89.99358 * 11 9 7 13 13 H 1.48498 * 109.47128 * 210.00046 * 11 9 7 14 14 H 1.48504 * 109.46899 * 329.99609 * 11 9 7 15 15 C 1.46901 * 110.99702 * 62.22762 * 5 4 3 16 16 C 1.50693 * 109.47402 * 76.08730 * 15 5 4 17 17 C 1.39954 * 126.01987 * 82.35612 * 16 15 5 18 18 C 1.50696 * 125.81188 * 0.02562 * 17 16 15 19 19 N 1.30811 * 108.37152 * 180.02562 * 17 16 15 20 20 N 1.40098 * 108.25513 * 359.97438 * 19 17 16 21 21 C 1.39813 * 126.10269 * 179.97438 * 20 19 17 22 22 C 1.38952 * 119.69096 * 335.02663 * 21 20 19 23 23 C 1.38413 * 119.10633 * 180.25248 * 22 21 20 24 24 C 1.38794 * 118.48586 * 359.48122 * 23 22 21 25 25 C 1.38129 * 119.29254 * 0.49981 * 24 23 22 26 26 N 1.31896 * 120.83781 * 359.76234 * 25 24 23 27 27 C 1.35289 * 126.01467 * 262.64323 * 16 15 5 28 28 C 1.50695 * 126.19337 * 0.02893 * 27 16 15 29 29 H 1.09000 * 109.46694 * 60.00037 * 1 2 3 30 30 H 1.08997 * 109.47174 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47084 * 300.00566 * 1 2 3 32 32 H 1.08994 * 109.47695 * 59.99771 * 3 2 1 33 33 H 1.08999 * 109.46866 * 299.99462 * 3 2 1 34 34 H 1.09001 * 109.47339 * 308.53564 * 4 3 2 35 35 H 1.09000 * 109.47282 * 188.53347 * 4 3 2 36 36 H 1.08998 * 109.47195 * 60.32270 * 6 5 4 37 37 H 1.08995 * 109.47271 * 180.32570 * 6 5 4 38 38 H 0.96995 * 119.99944 * 180.02562 * 10 9 7 39 39 H 1.09005 * 109.46900 * 316.08165 * 15 5 4 40 40 H 1.09006 * 109.46602 * 196.08652 * 15 5 4 41 41 H 1.09004 * 109.47367 * 270.00294 * 18 17 16 42 42 H 1.09008 * 109.47424 * 30.00551 * 18 17 16 43 43 H 1.09002 * 109.47424 * 150.00644 * 18 17 16 44 44 H 1.08000 * 120.44483 * 359.97438 * 22 21 20 45 45 H 1.08000 * 120.75408 * 179.69991 * 23 22 21 46 46 H 1.07999 * 120.35445 * 180.21632 * 24 23 22 47 47 H 1.07993 * 119.58128 * 179.74880 * 25 24 23 48 48 H 1.09003 * 109.47497 * 275.16232 * 28 27 16 49 49 H 1.09002 * 109.47222 * 35.16136 * 28 27 16 50 50 H 1.08997 * 109.47506 * 155.16554 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9841 0.6405 -1.2880 6 6 3.4392 -0.7056 -1.5095 7 6 3.8989 -1.6216 -0.4045 8 1 4.4679 -1.2255 0.4236 9 6 3.5926 -2.9651 -0.4507 10 7 3.9933 -3.7644 0.5139 11 14 2.6088 -3.6502 -1.8831 12 1 3.5362 -4.0785 -2.9609 13 1 1.8118 -4.8159 -1.4236 14 1 1.6960 -2.6008 -2.4036 15 6 3.6275 1.5410 -2.3925 16 6 4.5678 2.7186 -2.4041 17 6 5.8468 2.7450 -2.9717 18 6 6.5217 1.5978 -3.6784 19 7 6.3566 3.9350 -2.7841 20 7 5.4183 4.7099 -2.0899 21 6 5.5799 6.0415 -1.6954 22 6 6.8579 6.5525 -1.5044 23 6 7.0036 7.8708 -1.1087 24 6 5.8611 8.6378 -0.9277 25 6 4.6220 8.0642 -1.1361 26 7 4.5146 6.8032 -1.5078 27 6 4.3262 3.9348 -1.8629 28 6 3.0716 4.3543 -1.1412 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8468 0.5179 0.8047 35 1 3.9779 2.1691 0.1531 36 1 2.3502 -0.6604 -1.5146 37 1 3.7916 -1.0871 -2.4677 38 1 3.7782 -4.7096 0.4812 39 1 2.6049 1.8937 -2.2580 40 1 3.7054 1.0045 -3.3382 41 1 7.0868 1.0082 -2.9565 42 1 5.7678 0.9682 -4.1512 43 1 7.1987 1.9872 -4.4388 44 1 7.7256 5.9281 -1.6584 45 1 7.9842 8.2940 -0.9479 46 1 5.9400 9.6709 -0.6227 47 1 3.7298 8.6555 -0.9926 48 1 2.3284 4.6853 -1.8667 49 1 2.6772 3.5093 -0.5769 50 1 3.3015 5.1719 -0.4581 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619844315.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:46 Heat of formation + Delta-G solvation = 77.879595 kcal Electronic energy + Delta-G solvation = -31130.018525 eV Core-core repulsion = 27159.578999 eV Total energy + Delta-G solvation = -3970.439527 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.76867 -40.94372 -39.70019 -37.36478 -35.29578 -34.62509 -33.67674 -33.24149 -31.66018 -30.92443 -29.98222 -28.62817 -27.91032 -26.94557 -25.89638 -24.58893 -24.17865 -23.72427 -21.48335 -20.91629 -20.17554 -18.86335 -18.65356 -17.55655 -17.48700 -17.38090 -16.98600 -16.67382 -16.31658 -15.81008 -15.72765 -15.54108 -15.20228 -14.95393 -14.76728 -14.45319 -14.30565 -14.15003 -14.07260 -14.02327 -13.64104 -13.37259 -13.32247 -13.04374 -13.02073 -12.89201 -12.77728 -12.68126 -12.43138 -12.36587 -12.05426 -11.81053 -11.67524 -11.58542 -11.17975 -11.06964 -10.90257 -10.63592 -10.60131 -10.28372 -9.81072 -9.15314 -8.71085 -8.08741 -6.04559 -0.31284 0.19699 0.98337 1.17543 1.41968 1.43090 1.54976 1.63841 2.49504 2.71957 3.04707 3.27225 3.30198 3.43129 3.56998 3.72395 3.95244 3.99421 4.03055 4.07063 4.15710 4.21569 4.31044 4.39100 4.45335 4.48128 4.55612 4.58808 4.62126 4.65126 4.68013 4.72275 4.77882 4.88373 4.89291 4.94808 4.95389 5.01816 5.06433 5.15701 5.18821 5.22201 5.32359 5.53402 5.55593 5.65428 5.75007 6.14143 6.16721 6.44457 6.47853 6.53031 6.85791 6.90687 6.96812 7.54881 9.08956 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016642 B = 0.003039 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.076004 B = 9211.926272 C =10136.893438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.384 6.384 3 C 0.027 3.973 4 C 0.071 3.929 5 N -0.531 5.531 6 C 0.166 3.834 7 C -0.471 4.471 8 H 0.030 0.970 9 C 0.005 3.995 10 N -0.962 5.962 11 Si 0.940 3.060 12 H -0.272 1.272 13 H -0.292 1.292 14 H -0.247 1.247 15 C 0.130 3.870 16 C -0.222 4.222 17 C 0.104 3.896 18 C -0.067 4.067 19 N -0.317 5.317 20 N -0.337 5.337 21 C 0.338 3.662 22 C -0.180 4.180 23 C -0.050 4.050 24 C -0.171 4.171 25 C 0.120 3.880 26 N -0.521 5.521 27 C 0.104 3.896 28 C -0.084 4.084 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.030 0.970 37 H 0.014 0.986 38 H 0.259 0.741 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.132 0.868 45 H 0.174 0.826 46 H 0.181 0.819 47 H 0.198 0.802 48 H 0.094 0.906 49 H 0.083 0.917 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.893 27.509 -5.484 28.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.303 6.303 3 C -0.051 4.051 4 C -0.058 4.058 5 N -0.253 5.253 6 C 0.040 3.960 7 C -0.510 4.510 8 H 0.048 0.952 9 C -0.190 4.190 10 N -0.606 5.606 11 Si 0.765 3.235 12 H -0.198 1.198 13 H -0.219 1.219 14 H -0.170 1.170 15 C 0.001 3.999 16 C -0.233 4.233 17 C -0.064 4.064 18 C -0.125 4.125 19 N -0.137 5.137 20 N -0.115 5.115 21 C 0.113 3.887 22 C -0.203 4.203 23 C -0.076 4.076 24 C -0.191 4.191 25 C -0.038 4.038 26 N -0.235 5.235 27 C -0.019 4.019 28 C -0.142 4.142 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.047 0.953 37 H 0.032 0.968 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.150 0.850 45 H 0.191 0.809 46 H 0.199 0.801 47 H 0.214 0.786 48 H 0.112 0.888 49 H 0.102 0.898 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.090 27.594 -5.735 28.205 hybrid contribution -0.932 -1.016 0.058 1.380 sum -2.022 26.578 -5.677 27.253 Atomic orbital electron populations 1.22854 0.81732 1.02557 1.00535 1.88423 1.19652 1.27452 1.94785 1.23349 0.95645 0.85444 1.00636 1.22034 0.91361 0.99144 0.93242 1.61968 1.59814 1.02341 1.01222 1.20187 0.95134 0.85884 0.94799 1.21097 1.31324 0.92330 1.06201 0.95172 1.25650 0.97253 0.97412 0.98677 1.70074 1.50046 1.04808 1.35639 0.85815 0.79625 0.78117 0.79908 1.19801 1.21871 1.17026 1.20326 0.94417 0.90148 0.94974 1.19843 0.98124 0.95579 1.09713 1.22758 0.93531 0.93557 0.96517 1.20233 1.00517 0.92360 0.99426 1.77302 1.13833 1.04270 1.18310 1.45665 1.12899 1.08107 1.44876 1.18009 0.91257 0.82203 0.97204 1.21803 0.96129 0.98672 1.03676 1.21942 1.01838 0.91171 0.92667 1.22619 0.92212 1.03310 1.00951 1.23277 0.99972 0.88091 0.92431 1.67034 1.32170 1.08043 1.16216 1.21500 0.91262 0.90644 0.98490 1.20652 0.91141 1.02504 0.99921 0.93122 0.90731 0.93033 0.92154 0.91926 0.92789 0.90147 0.95279 0.96803 0.93257 0.93127 0.90387 0.90422 0.89570 0.89720 0.84960 0.80892 0.80118 0.78573 0.88790 0.89835 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 11.01 113.37 1.25 1.83 16 2 O -0.38 -15.26 7.00 -148.98 -1.04 -16.31 16 3 C 0.03 0.89 4.48 71.98 0.32 1.21 16 4 C 0.07 2.74 5.15 86.30 0.44 3.18 16 5 N -0.53 -21.85 4.67 -905.35 -4.23 -26.08 16 6 C 0.17 7.94 3.19 85.56 0.27 8.21 16 7 C -0.47 -27.50 8.60 25.60 0.22 -27.28 16 8 H 0.03 1.99 6.72 -2.91 -0.02 1.97 16 9 C 0.00 0.28 5.47 84.65 0.46 0.74 16 10 N -0.96 -62.32 13.96 21.45 0.30 -62.02 16 11 Si 0.94 45.73 27.38 68.60 1.88 47.61 16 12 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 13 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 14 H -0.25 -11.08 6.68 99.48 0.66 -10.42 16 15 C 0.13 4.35 4.88 85.55 0.42 4.77 16 16 C -0.22 -7.28 5.12 -20.13 -0.10 -7.39 16 17 C 0.10 3.45 7.21 43.13 0.31 3.76 16 18 C -0.07 -1.89 10.26 71.23 0.73 -1.15 16 19 N -0.32 -10.71 12.10 -47.35 -0.57 -11.28 16 20 N -0.34 -10.66 3.78 -180.43 -0.68 -11.34 16 21 C 0.34 9.00 7.30 132.77 0.97 9.97 16 22 C -0.18 -3.93 9.74 22.48 0.22 -3.71 16 23 C -0.05 -0.64 10.17 22.44 0.23 -0.42 16 24 C -0.17 -1.60 10.11 22.38 0.23 -1.38 16 25 C 0.12 1.59 11.18 84.66 0.95 2.54 16 26 N -0.52 -11.57 8.00 -192.80 -1.54 -13.11 16 27 C 0.10 3.19 6.35 41.26 0.26 3.46 16 28 C -0.08 -2.03 8.83 71.23 0.63 -1.40 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.06 1.79 4.94 -2.39 -0.01 1.78 16 34 H 0.05 2.55 6.31 -2.39 -0.02 2.54 16 35 H 0.08 2.83 5.98 -2.39 -0.01 2.82 16 36 H 0.03 1.41 4.69 -2.39 -0.01 1.40 16 37 H 0.01 0.67 7.15 -2.39 -0.02 0.65 16 38 H 0.26 15.80 8.31 -92.71 -0.77 15.02 16 39 H 0.05 1.55 5.06 -2.38 -0.01 1.54 16 40 H 0.08 2.55 7.18 -2.38 -0.02 2.53 16 41 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 42 H 0.09 2.31 7.43 -2.38 -0.02 2.29 16 43 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.13 3.11 7.91 -2.91 -0.02 3.08 16 45 H 0.17 1.05 8.06 -2.91 -0.02 1.02 16 46 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 47 H 0.20 1.14 8.06 -2.91 -0.02 1.12 16 48 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 49 H 0.08 1.97 3.81 -2.39 -0.01 1.96 16 50 H 0.08 1.90 6.61 -2.39 -0.02 1.88 16 Total: -1.00 -79.82 390.06 2.83 -76.98 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.92 Total: 18.61 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: 7.81 Total: -3.05 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -6.73 Total: -123.83 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -1.04 Total: -16.31 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.88 Total: 47.61 kcal Total: -79.82 2.83 -76.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619844315.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.860 kcal (2) G-P(sol) polarization free energy of solvation -79.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds