Wall clock time and date at job start Wed Apr 1 2020 03:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38043 * 126.29427 * 2 1 4 4 C 1.47429 * 126.41497 * 359.97438 * 3 2 1 5 5 O 1.21603 * 119.99827 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00013 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00147 * 179.97438 * 6 4 3 8 8 H 1.08994 * 109.46744 * 325.00304 * 7 6 4 9 9 C 1.52995 * 109.46900 * 84.99873 * 7 6 4 10 10 C 1.52996 * 109.46961 * 205.00151 * 7 6 4 11 11 C 1.52999 * 109.47496 * 65.00345 * 10 7 6 12 12 C 1.50694 * 109.47410 * 179.97438 * 11 10 7 13 13 C 1.34851 * 125.89096 * 85.02307 * 12 11 10 14 14 C 1.40885 * 107.42153 * 180.02562 * 13 12 11 15 15 C 1.34857 * 107.41719 * 0.02562 * 14 13 12 16 16 N 1.36342 * 125.89434 * 264.71647 * 12 11 10 17 17 C 1.46504 * 125.63022 * 359.97438 * 16 12 11 18 18 C 1.41293 * 107.17018 * 179.97438 * 3 2 1 19 19 N 1.30448 * 108.02361 * 359.74144 * 18 3 2 20 20 N 1.34263 * 126.28514 * 179.97438 * 2 1 3 21 21 C 1.46491 * 125.75867 * 359.97438 * 20 2 1 22 22 C 1.50702 * 109.46957 * 89.99963 * 21 20 2 23 23 H 1.08002 * 120.00299 * 0.02562 * 22 21 20 24 24 C 1.37884 * 119.99942 * 179.72213 * 22 21 20 25 25 N 1.31514 * 119.99985 * 180.27663 * 24 22 21 26 26 Si 1.86800 * 119.99777 * 0.28166 * 24 22 21 27 27 H 1.48498 * 109.47109 * 89.99834 * 26 24 22 28 28 H 1.48507 * 109.46754 * 209.99574 * 26 24 22 29 29 H 1.48498 * 109.47278 * 329.99405 * 26 24 22 30 30 H 1.08999 * 109.47548 * 270.02594 * 1 2 3 31 31 H 1.09005 * 109.47060 * 30.02824 * 1 2 3 32 32 H 1.08998 * 109.47841 * 150.02353 * 1 2 3 33 33 H 0.97008 * 119.99661 * 0.02562 * 6 4 3 34 34 H 1.08996 * 109.47311 * 180.02562 * 9 7 6 35 35 H 1.08997 * 109.47480 * 300.00210 * 9 7 6 36 36 H 1.09005 * 109.47024 * 60.00149 * 9 7 6 37 37 H 1.09001 * 109.46865 * 184.99925 * 10 7 6 38 38 H 1.08998 * 109.47529 * 304.99834 * 10 7 6 39 39 H 1.09001 * 109.46721 * 299.99669 * 11 10 7 40 40 H 1.08998 * 109.47148 * 59.99256 * 11 10 7 41 41 H 1.08010 * 126.29026 * 359.97438 * 13 12 11 42 42 H 1.08002 * 126.29679 * 180.02562 * 14 13 12 43 43 H 1.07993 * 125.89166 * 179.97438 * 15 14 13 44 44 H 1.08997 * 109.46767 * 90.00503 * 17 16 12 45 45 H 1.09007 * 109.46474 * 209.99503 * 17 16 12 46 46 H 1.08990 * 109.47305 * 329.99995 * 17 16 12 47 47 H 1.07999 * 125.98923 * 179.97438 * 18 3 2 48 48 H 1.09004 * 109.47166 * 330.00229 * 21 20 2 49 49 H 1.08994 * 109.47507 * 209.99935 * 21 20 2 50 50 H 0.96996 * 119.99730 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.8000 3.5106 0.0001 7 6 2.3646 4.9094 -0.0010 8 1 1.4536 5.0058 -0.5915 9 6 2.0914 5.3596 1.4354 10 6 3.4620 5.7846 -0.6098 11 6 3.6483 5.4176 -2.0834 12 6 4.7287 6.2801 -2.6832 13 6 6.0538 6.0346 -2.6354 14 6 6.7021 7.0848 -3.3149 15 6 5.7485 7.9325 -3.7516 16 7 4.5348 7.4401 -3.3729 17 6 3.2369 8.0580 -3.6559 18 6 3.6590 0.6497 0.0006 19 7 3.6340 -0.6545 0.0065 20 7 2.3015 -1.0823 0.0005 21 6 1.8499 -2.4758 0.0016 22 6 1.6945 -2.9547 -1.4188 23 1 1.9110 -2.2878 -2.2403 24 6 1.2820 -4.2462 -1.6697 25 7 1.1517 -4.6658 -2.9093 26 14 0.9082 -5.3999 -0.2489 27 1 -0.5243 -5.2789 0.1233 28 1 1.1971 -6.7981 -0.6576 29 1 1.7547 -5.0400 0.9169 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3635 -0.8901 -0.5134 33 1 3.7463 3.2971 0.0005 34 1 1.7670 6.4001 1.4347 35 1 1.3097 4.7360 1.8692 36 1 3.0026 5.2631 2.0260 37 1 3.1763 6.8335 -0.5300 38 1 4.3967 5.6208 -0.0736 39 1 3.9340 4.3687 -2.1633 40 1 2.7136 5.5814 -2.6196 41 1 6.5307 5.1887 -2.1624 42 1 7.7671 7.1915 -3.4595 43 1 5.9169 8.8416 -4.3096 44 1 2.9771 8.7431 -2.8490 45 1 3.2936 8.6080 -4.5953 46 1 2.4748 7.2828 -3.7341 47 1 4.5449 1.2674 0.0004 48 1 0.8914 -2.5467 0.5158 49 1 2.5846 -3.0955 0.5156 50 1 0.8611 -5.5742 -3.0858 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889235589.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:21 Heat of formation + Delta-G solvation = 69.986101 kcal Electronic energy + Delta-G solvation = -29433.234524 eV Core-core repulsion = 25462.452709 eV Total energy + Delta-G solvation = -3970.781814 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.40339 -40.84828 -39.12162 -36.38055 -33.93469 -33.05879 -32.97432 -32.14530 -31.37773 -30.59866 -27.77740 -27.71235 -26.70136 -26.59582 -24.04341 -23.15748 -22.27625 -20.98825 -20.70575 -19.87672 -19.26328 -18.95232 -17.22447 -17.16605 -17.06260 -16.13228 -15.56314 -15.17436 -14.96243 -14.64644 -14.49562 -14.21216 -14.03204 -13.89981 -13.51138 -13.45753 -13.28944 -13.10731 -12.70937 -12.65087 -12.57252 -12.50055 -12.29746 -12.24296 -12.20515 -12.09769 -11.88279 -11.59123 -11.47315 -11.29715 -11.21088 -10.87823 -10.84819 -10.39683 -10.20572 -9.79437 -9.39835 -8.97243 -8.85176 -8.76764 -8.63490 -8.14148 -7.94738 -6.32964 -4.37705 2.06097 2.14786 2.74548 2.75357 2.89021 3.06216 3.12228 3.18452 3.22844 3.53996 3.90573 4.15712 4.36131 4.47183 4.72713 4.78470 4.84776 4.86414 4.92158 5.02525 5.07298 5.11843 5.21192 5.24791 5.39296 5.42201 5.46947 5.49776 5.52731 5.61382 5.68225 5.69470 5.84558 5.91929 6.01374 6.03719 6.13638 6.14446 6.22446 6.27272 6.45813 6.51601 6.61270 6.69108 6.88367 7.04205 7.07356 7.18684 7.19436 7.57804 7.77119 8.20154 8.29710 8.62460 8.70688 9.20973 10.79237 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.002174 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.795284 B =12878.007181 C =13711.910605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.168 3.832 3 C -0.329 4.329 4 C 0.605 3.395 5 O -0.556 6.556 6 N -0.729 5.729 7 C 0.146 3.854 8 H 0.087 0.913 9 C -0.162 4.162 10 C -0.118 4.118 11 C -0.052 4.052 12 C 0.021 3.979 13 C -0.198 4.198 14 C -0.199 4.199 15 C -0.024 4.024 16 N -0.449 5.449 17 C 0.070 3.930 18 C 0.061 3.939 19 N -0.293 5.293 20 N -0.314 5.314 21 C 0.225 3.775 22 C -0.546 4.546 23 H 0.082 0.918 24 C 0.081 3.919 25 N -0.883 5.883 26 Si 0.872 3.128 27 H -0.270 1.270 28 H -0.278 1.278 29 H -0.263 1.263 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.397 0.603 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.158 0.842 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.177 0.823 48 H 0.048 0.952 49 H 0.055 0.945 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.622 25.498 3.879 26.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.031 3.969 3 C -0.345 4.345 4 C 0.396 3.604 5 O -0.436 6.436 6 N -0.381 5.381 7 C 0.041 3.959 8 H 0.105 0.895 9 C -0.221 4.221 10 C -0.156 4.156 11 C -0.090 4.090 12 C -0.091 4.091 13 C -0.222 4.222 14 C -0.224 4.224 15 C -0.153 4.153 16 N -0.125 5.125 17 C -0.072 4.072 18 C -0.126 4.126 19 N -0.113 5.113 20 N -0.090 5.090 21 C 0.106 3.894 22 C -0.584 4.584 23 H 0.100 0.900 24 C -0.124 4.124 25 N -0.519 5.519 26 Si 0.698 3.302 27 H -0.195 1.195 28 H -0.204 1.204 29 H -0.188 1.188 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.232 0.768 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.175 0.825 44 H 0.090 0.910 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.194 0.806 48 H 0.065 0.935 49 H 0.073 0.927 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.063 24.430 3.675 25.036 hybrid contribution 0.026 -0.038 0.417 0.419 sum 4.088 24.391 4.092 25.068 Atomic orbital electron populations 1.20636 0.86829 1.05137 1.03156 1.21467 0.94936 0.86413 0.94068 1.19702 0.93061 0.92681 1.29024 1.17271 0.85074 0.83853 0.74249 1.90684 1.16724 1.84443 1.51702 1.45823 1.09674 1.05233 1.77413 1.20865 0.97859 0.80573 0.96611 0.89532 1.22171 1.02203 1.01155 0.96566 1.21871 0.99212 0.99630 0.94883 1.20149 0.95481 0.98655 0.94712 1.20373 0.96001 0.90070 1.02613 1.20709 0.92180 1.01800 1.07547 1.20877 0.98576 0.97110 1.05835 1.21746 0.83671 1.01977 1.07882 1.43932 1.06249 1.19340 1.43006 1.22001 0.83689 0.99218 1.02243 1.23746 0.96442 0.92513 0.99927 1.77146 0.98075 1.12445 1.23587 1.48897 1.02770 1.07500 1.49883 1.20141 0.95698 0.73403 1.00181 1.21103 1.48134 0.99089 0.90040 0.90010 1.24798 0.94317 0.97396 0.95864 1.69864 1.45225 1.18112 1.18701 0.86906 0.79516 0.81038 0.82726 1.19503 1.20369 1.18778 0.90561 0.88382 0.89884 0.76839 0.92128 0.91808 0.92530 0.90872 0.90776 0.89273 0.91356 0.84760 0.84919 0.82467 0.91046 0.90028 0.89757 0.80592 0.93452 0.92730 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.74 9.34 36.00 0.34 -1.41 16 2 C 0.17 3.32 7.01 -81.60 -0.57 2.75 16 3 C -0.33 -5.81 6.13 -105.07 -0.64 -6.45 16 4 C 0.61 9.49 7.78 -12.52 -0.10 9.39 16 5 O -0.56 -10.07 14.50 5.27 0.08 -9.99 16 6 N -0.73 -8.22 4.52 -54.89 -0.25 -8.47 16 7 C 0.15 1.39 2.57 -67.94 -0.17 1.22 16 8 H 0.09 0.97 7.58 -51.93 -0.39 0.57 16 9 C -0.16 -1.48 9.48 37.15 0.35 -1.13 16 10 C -0.12 -0.89 4.73 -26.73 -0.13 -1.01 16 11 C -0.05 -0.45 5.38 -27.89 -0.15 -0.60 16 12 C 0.02 0.20 6.14 -81.79 -0.50 -0.30 16 13 C -0.20 -2.08 10.76 -39.78 -0.43 -2.50 16 14 C -0.20 -1.97 10.86 -39.78 -0.43 -2.40 16 15 C -0.02 -0.21 11.44 -16.75 -0.19 -0.40 16 16 N -0.45 -3.94 3.15 -119.90 -0.38 -4.32 16 17 C 0.07 0.39 10.91 59.85 0.65 1.04 16 18 C 0.06 1.03 11.50 -16.98 -0.20 0.83 16 19 N -0.29 -6.14 12.50 30.86 0.39 -5.76 16 20 N -0.31 -6.89 3.56 -57.78 -0.21 -7.10 16 21 C 0.22 5.22 4.85 -5.20 -0.03 5.19 16 22 C -0.55 -14.91 9.94 -34.44 -0.34 -15.25 16 23 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 24 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 25 N -0.88 -25.82 13.96 55.43 0.77 -25.05 16 26 Si 0.87 19.74 27.47 -169.99 -4.67 15.07 16 27 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.10 1.71 6.50 -51.93 -0.34 1.37 16 32 H 0.08 1.51 7.70 -51.93 -0.40 1.11 16 33 H 0.40 3.67 7.56 -40.82 -0.31 3.36 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.84 7.75 -51.93 -0.40 0.44 16 40 H 0.07 0.58 6.91 -51.93 -0.36 0.22 16 41 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 42 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 43 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.08 0.44 6.94 -51.93 -0.36 0.08 16 47 H 0.18 2.10 7.50 -52.49 -0.39 1.71 16 48 H 0.05 1.01 7.06 -51.93 -0.37 0.65 16 49 H 0.05 1.27 7.19 -51.93 -0.37 0.90 16 50 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 413.07 15.07 6.22 6.22 Total: -1.00 -33.68 413.07 -8.61 -42.29 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -7.94 Total: 6.01 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -2.64 Total: -8.91 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 0.33 Total: -50.69 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -9.99 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.67 Total: 15.07 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.68 -8.61 -42.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889235589.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.276 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds