Wall clock time and date at job start Wed Apr 1 2020 03:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38043 * 126.29427 * 2 1 4 4 C 1.47429 * 126.41497 * 359.97438 * 3 2 1 5 5 O 1.21603 * 119.99827 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00013 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00147 * 179.97438 * 6 4 3 8 8 H 1.08994 * 109.46744 * 325.00304 * 7 6 4 9 9 C 1.52995 * 109.46900 * 84.99873 * 7 6 4 10 10 C 1.52996 * 109.46961 * 205.00151 * 7 6 4 11 11 C 1.52999 * 109.47496 * 65.00345 * 10 7 6 12 12 C 1.50694 * 109.47410 * 179.97438 * 11 10 7 13 13 C 1.34851 * 125.89096 * 85.02307 * 12 11 10 14 14 C 1.40885 * 107.42153 * 180.02562 * 13 12 11 15 15 C 1.34857 * 107.41719 * 0.02562 * 14 13 12 16 16 N 1.36342 * 125.89434 * 264.71647 * 12 11 10 17 17 C 1.46504 * 125.63022 * 359.97438 * 16 12 11 18 18 C 1.41293 * 107.17018 * 179.97438 * 3 2 1 19 19 N 1.30448 * 108.02361 * 359.74144 * 18 3 2 20 20 N 1.34263 * 126.28514 * 179.97438 * 2 1 3 21 21 C 1.46491 * 125.75867 * 359.97438 * 20 2 1 22 22 C 1.50702 * 109.46957 * 89.99963 * 21 20 2 23 23 H 1.08002 * 120.00299 * 0.02562 * 22 21 20 24 24 C 1.37884 * 119.99942 * 179.72213 * 22 21 20 25 25 N 1.31514 * 119.99985 * 180.27663 * 24 22 21 26 26 Si 1.86800 * 119.99777 * 0.28166 * 24 22 21 27 27 H 1.48498 * 109.47109 * 89.99834 * 26 24 22 28 28 H 1.48507 * 109.46754 * 209.99574 * 26 24 22 29 29 H 1.48498 * 109.47278 * 329.99405 * 26 24 22 30 30 H 1.08999 * 109.47548 * 270.02594 * 1 2 3 31 31 H 1.09005 * 109.47060 * 30.02824 * 1 2 3 32 32 H 1.08998 * 109.47841 * 150.02353 * 1 2 3 33 33 H 0.97008 * 119.99661 * 0.02562 * 6 4 3 34 34 H 1.08996 * 109.47311 * 180.02562 * 9 7 6 35 35 H 1.08997 * 109.47480 * 300.00210 * 9 7 6 36 36 H 1.09005 * 109.47024 * 60.00149 * 9 7 6 37 37 H 1.09001 * 109.46865 * 184.99925 * 10 7 6 38 38 H 1.08998 * 109.47529 * 304.99834 * 10 7 6 39 39 H 1.09001 * 109.46721 * 299.99669 * 11 10 7 40 40 H 1.08998 * 109.47148 * 59.99256 * 11 10 7 41 41 H 1.08010 * 126.29026 * 359.97438 * 13 12 11 42 42 H 1.08002 * 126.29679 * 180.02562 * 14 13 12 43 43 H 1.07993 * 125.89166 * 179.97438 * 15 14 13 44 44 H 1.08997 * 109.46767 * 90.00503 * 17 16 12 45 45 H 1.09007 * 109.46474 * 209.99503 * 17 16 12 46 46 H 1.08990 * 109.47305 * 329.99995 * 17 16 12 47 47 H 1.07999 * 125.98923 * 179.97438 * 18 3 2 48 48 H 1.09004 * 109.47166 * 330.00229 * 21 20 2 49 49 H 1.08994 * 109.47507 * 209.99935 * 21 20 2 50 50 H 0.96996 * 119.99730 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.8000 3.5106 0.0001 7 6 2.3646 4.9094 -0.0010 8 1 1.4536 5.0058 -0.5915 9 6 2.0914 5.3596 1.4354 10 6 3.4620 5.7846 -0.6098 11 6 3.6483 5.4176 -2.0834 12 6 4.7287 6.2801 -2.6832 13 6 6.0538 6.0346 -2.6354 14 6 6.7021 7.0848 -3.3149 15 6 5.7485 7.9325 -3.7516 16 7 4.5348 7.4401 -3.3729 17 6 3.2369 8.0580 -3.6559 18 6 3.6590 0.6497 0.0006 19 7 3.6340 -0.6545 0.0065 20 7 2.3015 -1.0823 0.0005 21 6 1.8499 -2.4758 0.0016 22 6 1.6945 -2.9547 -1.4188 23 1 1.9110 -2.2878 -2.2403 24 6 1.2820 -4.2462 -1.6697 25 7 1.1517 -4.6658 -2.9093 26 14 0.9082 -5.3999 -0.2489 27 1 -0.5243 -5.2789 0.1233 28 1 1.1971 -6.7981 -0.6576 29 1 1.7547 -5.0400 0.9169 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3635 -0.8901 -0.5134 33 1 3.7463 3.2971 0.0005 34 1 1.7670 6.4001 1.4347 35 1 1.3097 4.7360 1.8692 36 1 3.0026 5.2631 2.0260 37 1 3.1763 6.8335 -0.5300 38 1 4.3967 5.6208 -0.0736 39 1 3.9340 4.3687 -2.1633 40 1 2.7136 5.5814 -2.6196 41 1 6.5307 5.1887 -2.1624 42 1 7.7671 7.1915 -3.4595 43 1 5.9169 8.8416 -4.3096 44 1 2.9771 8.7431 -2.8490 45 1 3.2936 8.6080 -4.5953 46 1 2.4748 7.2828 -3.7341 47 1 4.5449 1.2674 0.0004 48 1 0.8914 -2.5467 0.5158 49 1 2.5846 -3.0955 0.5156 50 1 0.8611 -5.5742 -3.0858 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889235589.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:20 Heat of formation + Delta-G solvation = 49.576642 kcal Electronic energy + Delta-G solvation = -29434.119544 eV Core-core repulsion = 25462.452709 eV Total energy + Delta-G solvation = -3971.666835 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.31973 -42.04656 -40.28860 -37.35742 -35.76944 -34.19109 -33.64280 -33.62377 -32.83810 -31.62752 -29.49591 -28.40214 -28.13888 -27.11682 -25.15529 -24.61163 -23.54964 -21.97336 -21.43034 -21.11194 -20.43248 -19.90433 -19.28109 -18.47408 -17.75114 -17.07104 -16.83209 -16.46634 -16.08116 -16.02427 -15.61568 -15.33482 -15.15240 -14.85273 -14.75884 -14.46164 -14.42412 -14.10872 -13.99581 -13.79149 -13.74239 -13.67242 -13.24205 -13.20867 -13.13817 -12.97871 -12.96085 -12.84722 -12.58364 -12.56249 -12.26514 -12.14354 -12.00495 -11.85426 -11.69827 -11.59666 -10.92190 -10.72122 -10.24426 -10.03808 -9.43345 -9.40803 -8.83488 -8.43405 -6.55435 0.69199 1.33626 1.34339 1.35582 1.39148 1.45248 1.64792 2.16213 2.18325 2.24386 2.43336 2.59886 2.88926 3.64240 3.73991 3.77590 4.04292 4.07280 4.12011 4.14001 4.18721 4.27997 4.42017 4.43970 4.48499 4.51181 4.56901 4.66632 4.69075 4.70109 4.75766 4.77215 4.80627 4.84920 4.89509 4.98973 5.07101 5.11847 5.17862 5.21672 5.30200 5.39953 5.46260 5.52108 5.63347 5.73151 5.84704 6.18348 6.21864 6.38942 6.47758 6.58947 6.69570 6.83685 7.08537 7.44354 8.73086 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.002174 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.795284 B =12878.007181 C =13711.910605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.146 3.854 3 C -0.329 4.329 4 C 0.606 3.394 5 O -0.583 6.583 6 N -0.710 5.710 7 C 0.147 3.853 8 H 0.072 0.928 9 C -0.158 4.158 10 C -0.102 4.102 11 C -0.048 4.048 12 C 0.010 3.990 13 C -0.222 4.222 14 C -0.224 4.224 15 C -0.024 4.024 16 N -0.453 5.453 17 C 0.063 3.937 18 C 0.080 3.920 19 N -0.335 5.335 20 N -0.339 5.339 21 C 0.234 3.766 22 C -0.553 4.553 23 H 0.026 0.974 24 C 0.023 3.977 25 N -0.935 5.935 26 Si 0.949 3.051 27 H -0.252 1.252 28 H -0.277 1.277 29 H -0.243 1.243 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.410 0.590 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.184 0.816 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.085 0.915 47 H 0.225 0.775 48 H 0.070 0.930 49 H 0.056 0.944 50 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.857 27.445 5.772 28.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.010 3.990 3 C -0.344 4.344 4 C 0.395 3.605 5 O -0.464 6.464 6 N -0.362 5.362 7 C 0.043 3.957 8 H 0.090 0.910 9 C -0.216 4.216 10 C -0.140 4.140 11 C -0.086 4.086 12 C -0.102 4.102 13 C -0.247 4.247 14 C -0.249 4.249 15 C -0.154 4.154 16 N -0.128 5.128 17 C -0.077 4.077 18 C -0.107 4.107 19 N -0.154 5.154 20 N -0.116 5.116 21 C 0.114 3.886 22 C -0.591 4.591 23 H 0.044 0.956 24 C -0.178 4.178 25 N -0.573 5.573 26 Si 0.770 3.230 27 H -0.176 1.176 28 H -0.203 1.203 29 H -0.166 1.166 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.246 0.754 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.153 0.847 42 H 0.158 0.842 43 H 0.201 0.799 44 H 0.104 0.896 45 H 0.116 0.884 46 H 0.103 0.897 47 H 0.241 0.759 48 H 0.088 0.912 49 H 0.074 0.926 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.320 26.435 5.574 27.360 hybrid contribution 0.015 -0.433 -0.295 0.524 sum 4.335 26.003 5.279 26.885 Atomic orbital electron populations 1.20618 0.85795 1.04282 1.04349 1.21995 0.95986 0.86719 0.94262 1.20033 0.93193 0.93394 1.27818 1.17081 0.85182 0.83765 0.74458 1.90674 1.17939 1.84666 1.53135 1.45709 1.09711 1.05337 1.75457 1.20978 0.98040 0.79523 0.97154 0.91023 1.22124 1.01925 1.01824 0.95755 1.21748 0.98678 0.99750 0.93872 1.20101 0.95134 0.97920 0.95440 1.20492 0.95943 0.90724 1.03018 1.20932 0.92914 1.02376 1.08446 1.21140 0.99439 0.97620 1.06687 1.22198 0.83505 1.02463 1.07259 1.44194 1.07315 1.19025 1.42303 1.22242 0.82244 0.99531 1.03728 1.24497 0.97744 0.91575 0.96867 1.77087 0.98030 1.14546 1.25771 1.48749 1.03505 1.07256 1.52095 1.19873 0.96724 0.74660 0.97334 1.21195 1.48214 0.98738 0.90965 0.95604 1.25828 0.93655 0.99215 0.99053 1.70026 1.46712 1.18952 1.21609 0.85700 0.80455 0.77802 0.79039 1.17607 1.20256 1.16602 0.88309 0.88549 0.91221 0.75373 0.90133 0.94273 0.91419 0.89454 0.89912 0.90306 0.91381 0.84704 0.84224 0.79938 0.89590 0.88357 0.89673 0.75857 0.91225 0.92629 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.26 9.34 71.23 0.67 -2.59 16 2 C 0.15 5.79 7.01 42.14 0.30 6.09 16 3 C -0.33 -11.36 6.13 -20.15 -0.12 -11.48 16 4 C 0.61 18.35 7.78 86.66 0.67 19.02 16 5 O -0.58 -20.79 14.50 -4.04 -0.06 -20.85 16 6 N -0.71 -14.64 4.52 -445.82 -2.02 -16.66 16 7 C 0.15 2.51 2.57 44.99 0.12 2.62 16 8 H 0.07 1.50 7.58 -2.39 -0.02 1.48 16 9 C -0.16 -2.50 9.48 71.98 0.68 -1.82 16 10 C -0.10 -1.28 4.73 30.59 0.14 -1.14 16 11 C -0.05 -0.75 5.38 29.85 0.16 -0.59 16 12 C 0.01 0.19 6.14 41.08 0.25 0.44 16 13 C -0.22 -4.50 10.76 22.14 0.24 -4.26 16 14 C -0.22 -4.24 10.86 22.14 0.24 -4.00 16 15 C -0.02 -0.39 11.44 83.21 0.95 0.56 16 16 N -0.45 -7.10 3.15 -533.25 -1.68 -8.78 16 17 C 0.06 0.55 10.91 127.77 1.39 1.94 16 18 C 0.08 2.59 11.50 85.65 0.99 3.57 16 19 N -0.33 -14.01 12.50 -56.27 -0.70 -14.71 16 20 N -0.34 -15.04 3.56 -336.72 -1.20 -16.24 16 21 C 0.23 10.93 4.85 85.64 0.42 11.34 16 22 C -0.55 -31.39 9.94 25.60 0.25 -31.14 16 23 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 24 C 0.02 1.27 5.47 84.66 0.46 1.73 16 25 N -0.93 -56.64 13.96 21.45 0.30 -56.34 16 26 Si 0.95 40.50 27.47 68.60 1.88 42.38 16 27 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 28 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 29 H -0.24 -9.49 6.54 99.48 0.65 -8.84 16 30 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.10 3.41 6.50 -2.38 -0.02 3.39 16 32 H 0.07 2.60 7.70 -2.39 -0.02 2.58 16 33 H 0.41 6.46 7.56 -92.70 -0.70 5.76 16 34 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 1.39 7.75 -2.39 -0.02 1.38 16 40 H 0.07 1.07 6.91 -2.39 -0.02 1.05 16 41 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 42 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 43 H 0.18 1.77 8.06 -2.91 -0.02 1.75 16 44 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 46 H 0.08 0.72 6.94 -2.39 -0.02 0.71 16 47 H 0.23 4.64 7.50 -2.91 -0.02 4.61 16 48 H 0.07 2.91 7.06 -2.38 -0.02 2.89 16 49 H 0.06 2.56 7.19 -2.39 -0.02 2.55 16 50 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -77.05 413.07 4.52 -72.53 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.18 Total: 28.37 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 7.81 Total: -9.71 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -5.30 Total: -112.73 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.06 Total: -20.85 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 1.88 Total: 42.38 kcal Total: -77.05 4.52 -72.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889235589.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.107 kcal (2) G-P(sol) polarization free energy of solvation -77.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds