Wall clock time and date at job start Wed Apr 1 2020 03:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47152 * 88.41172 * 3 2 1 5 5 N 1.46904 * 109.47221 * 179.97438 * 4 3 2 6 6 C 1.46849 * 110.99714 * 189.99702 * 5 4 3 7 7 C 1.53040 * 109.51701 * 185.83951 * 6 5 4 8 8 C 1.53117 * 109.27775 * 300.81723 * 7 6 5 9 9 N 1.46506 * 109.52315 * 177.56060 * 8 7 6 10 10 C 1.34773 * 119.99968 * 155.12666 * 9 8 7 11 11 O 1.21602 * 119.99987 * 359.73127 * 10 9 8 12 12 C 1.47436 * 119.99867 * 180.02562 * 10 9 8 13 13 C 1.41286 * 126.41299 * 359.41281 * 12 10 9 14 14 N 1.30448 * 108.02337 * 179.87788 * 13 12 10 15 15 N 1.39938 * 108.89467 * 0.38911 * 14 13 12 16 16 C 1.46503 * 125.75356 * 179.75148 * 15 14 13 17 17 C 1.50696 * 109.46974 * 269.99715 * 16 15 14 18 18 H 1.08001 * 120.00163 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99873 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99984 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00024 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47063 * 90.00165 * 21 19 17 23 23 H 1.48501 * 109.47045 * 210.00089 * 21 19 17 24 24 H 1.48501 * 109.46990 * 330.00178 * 21 19 17 25 25 C 1.34259 * 108.48882 * 359.74809 * 15 14 13 26 26 C 1.50699 * 126.28729 * 179.97438 * 25 15 14 27 27 C 1.53121 * 109.21400 * 57.63068 * 8 7 6 28 28 C 1.46844 * 110.99956 * 314.20740 * 5 4 3 29 29 H 4.44651 * 5.63397 * 180.02562 * 4 1 2 30 30 H 1.08993 * 109.47669 * 328.40794 * 3 2 1 31 31 H 1.09000 * 109.46675 * 208.40350 * 3 2 1 32 32 H 1.09000 * 109.47535 * 59.99263 * 4 3 2 33 33 H 1.09005 * 109.46934 * 299.99881 * 4 3 2 34 34 H 1.08994 * 109.46496 * 65.82676 * 6 5 4 35 35 H 1.08992 * 109.45528 * 305.84562 * 6 5 4 36 36 H 1.08998 * 109.49840 * 180.87931 * 7 6 5 37 37 H 1.08998 * 109.50568 * 60.76392 * 7 6 5 38 38 H 1.08993 * 109.52889 * 297.68928 * 8 7 6 39 39 H 0.97004 * 120.00014 * 335.13517 * 9 8 7 40 40 H 1.08000 * 125.99145 * 0.03887 * 13 12 10 41 41 H 1.09004 * 109.46911 * 29.99927 * 16 15 14 42 42 H 1.09002 * 109.46643 * 149.99548 * 16 15 14 43 43 H 0.96997 * 120.00146 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.47568 * 269.99949 * 26 25 15 45 45 H 1.09002 * 109.47528 * 29.99975 * 26 25 15 46 46 H 1.08998 * 109.46953 * 150.00240 * 26 25 15 47 47 H 1.08998 * 109.50549 * 62.30932 * 27 8 7 48 48 H 1.08996 * 109.50537 * 182.43865 * 27 8 7 49 49 H 1.09005 * 109.46121 * 294.17916 * 28 5 4 50 50 H 1.09001 * 109.46133 * 54.15450 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 -0.0391 -1.4419 5 7 4.6251 -0.0378 -1.4420 6 6 5.1510 0.1629 -2.7982 7 6 6.6741 0.0137 -2.7833 8 6 7.2738 1.0464 -1.8251 9 7 8.7269 0.8702 -1.7621 10 6 9.5172 1.9066 -1.4192 11 8 9.0246 2.9893 -1.1668 12 6 10.9795 1.7293 -1.3565 13 6 11.6916 0.5369 -1.6157 14 7 12.9629 0.7838 -1.4588 15 7 13.1219 2.1239 -1.0884 16 6 14.3972 2.7904 -0.8135 17 6 14.7306 2.6530 0.6497 18 1 14.0595 2.1226 1.3090 19 6 15.8925 3.2044 1.1467 20 7 16.7095 3.8507 0.3440 21 14 16.3054 3.0347 2.9606 22 1 17.0957 1.7957 3.1745 23 1 17.0995 4.2103 3.3996 24 1 15.0494 2.9632 3.7496 25 6 11.9087 2.6956 -1.0276 26 6 11.6153 4.1289 -0.6661 27 6 6.6736 0.8481 -0.4304 28 6 5.1504 0.9716 -0.5139 29 1 -1.0500 0.0002 0.0000 30 1 3.0098 -0.8745 0.5383 31 1 3.0088 0.9048 0.4889 32 1 2.7922 0.8360 -1.9803 33 1 2.7931 -0.9432 -1.9309 34 1 4.8874 1.1617 -3.1459 35 1 4.7199 -0.5805 -3.4685 36 1 7.0656 0.1781 -3.7871 37 1 6.9382 -0.9896 -2.4489 38 1 7.0438 2.0506 -2.1812 39 1 9.1201 0.0075 -1.9674 40 1 11.2595 -0.4120 -1.8971 41 1 15.1842 2.3294 -1.4104 42 1 14.3178 3.8467 -1.0705 43 1 17.5267 4.2390 0.6937 44 1 11.4692 4.2094 0.4111 45 1 12.4527 4.7584 -0.9672 46 1 10.7117 4.4557 -1.1807 47 1 6.9376 -0.1416 -0.0579 48 1 7.0647 1.6084 0.2456 49 1 4.8867 1.9667 -0.8722 50 1 4.7189 0.8155 0.4748 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896520676.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:11 Heat of formation + Delta-G solvation = 80.449141 kcal Electronic energy + Delta-G solvation = -29144.150850 eV Core-core repulsion = 25173.822748 eV Total energy + Delta-G solvation = -3970.328103 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.79969 -39.87522 -38.44555 -35.88352 -34.20517 -33.86094 -32.26309 -31.77304 -31.26727 -30.97316 -29.22290 -27.34346 -26.63266 -24.91287 -23.63423 -23.31742 -22.27990 -21.57775 -20.25867 -19.73714 -18.90968 -18.48370 -17.12066 -16.79458 -16.56259 -15.73513 -15.63997 -15.24230 -15.13842 -14.87200 -14.52794 -14.41640 -14.18885 -13.98115 -13.71689 -13.54537 -13.24700 -13.06516 -12.66339 -12.56765 -12.43016 -12.29411 -12.12538 -12.09249 -11.77158 -11.54583 -11.46715 -11.45573 -11.14008 -11.06649 -10.88643 -10.71518 -10.54178 -10.40184 -10.36755 -10.16011 -9.93201 -9.36394 -8.91462 -8.70991 -8.69027 -8.57740 -7.89732 -6.33536 -4.41332 2.20898 2.39036 2.46010 2.81142 3.17433 3.18571 3.24854 3.30251 3.44366 3.57767 3.93425 4.08749 4.24454 4.45900 4.54118 4.66839 4.73158 4.87230 4.97459 5.00278 5.04878 5.10058 5.12299 5.24958 5.27221 5.36300 5.37639 5.47965 5.52795 5.56314 5.61487 5.63473 5.70722 5.76697 5.81658 5.91131 6.01247 6.13509 6.16412 6.43341 6.57765 6.65120 6.69403 6.71223 6.81161 6.91230 7.17337 7.23056 7.56452 7.76955 7.77726 7.81446 8.39191 8.63098 8.65867 9.25598 10.74678 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020838 B = 0.001825 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.356808 B =15339.988712 C =15988.021737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.185 4.185 3 C -0.019 4.019 4 C 0.062 3.938 5 N -0.538 5.538 6 C 0.061 3.939 7 C -0.124 4.124 8 C 0.149 3.851 9 N -0.730 5.730 10 C 0.605 3.395 11 O -0.557 6.557 12 C -0.333 4.333 13 C 0.058 3.942 14 N -0.296 5.296 15 N -0.314 5.314 16 C 0.251 3.749 17 C -0.540 4.540 18 H 0.065 0.935 19 C 0.068 3.932 20 N -0.890 5.890 21 Si 0.908 3.092 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.271 1.271 25 C 0.165 3.835 26 C -0.092 4.092 27 C -0.127 4.127 28 C 0.049 3.951 29 H 0.217 0.783 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.037 0.963 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.398 0.602 40 H 0.175 0.825 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.269 0.731 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.093 0.907 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.037 0.963 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.346 -7.240 -5.329 27.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.186 4.186 3 C -0.056 4.056 4 C -0.066 4.066 5 N -0.263 5.263 6 C -0.067 4.067 7 C -0.162 4.162 8 C 0.044 3.956 9 N -0.381 5.381 10 C 0.396 3.604 11 O -0.437 6.437 12 C -0.349 4.349 13 C -0.129 4.129 14 N -0.116 5.116 15 N -0.091 5.091 16 C 0.134 3.866 17 C -0.578 4.578 18 H 0.083 0.917 19 C -0.136 4.136 20 N -0.527 5.527 21 Si 0.735 3.265 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.196 1.196 25 C 0.027 3.973 26 C -0.150 4.150 27 C -0.166 4.166 28 C -0.079 4.079 29 H 0.234 0.766 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.232 0.768 40 H 0.192 0.808 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.111 0.889 47 H 0.092 0.908 48 H 0.094 0.906 49 H 0.055 0.945 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.957 -7.241 -5.034 26.469 hybrid contribution -0.679 0.460 0.645 1.044 sum -25.636 -6.781 -4.389 26.878 Atomic orbital electron populations 1.24930 0.95990 1.01385 1.00397 1.23054 0.94454 1.00291 1.00752 1.18912 0.84556 1.04179 0.97916 1.22021 0.87319 1.01619 0.95610 1.62042 1.06524 1.49383 1.08372 1.22009 0.94858 1.00271 0.89580 1.21862 0.94484 1.00089 0.99750 1.20873 0.79825 0.99797 0.95094 1.45773 1.06081 1.13907 1.72387 1.17314 0.85167 0.83175 0.74791 1.90681 1.76064 1.25871 1.51043 1.19689 0.92952 0.95293 1.26924 1.23717 0.91129 0.97885 1.00213 1.77138 1.18215 0.95170 1.21081 1.49365 1.07579 1.06443 1.45726 1.19848 0.76153 0.92372 0.98234 1.21252 1.07141 1.37020 0.92434 0.91660 1.24919 0.95397 0.94340 0.98970 1.69912 1.12145 1.35069 1.35581 0.86324 0.78665 0.77905 0.83643 1.20241 1.20787 1.19599 1.21475 0.85362 0.96152 0.94266 1.20563 1.03075 0.88371 1.03037 1.22005 0.93686 1.03175 0.97755 1.22234 0.95537 0.92992 0.97137 0.76646 0.88488 0.89080 0.94387 0.90155 0.94449 0.90257 0.90670 0.90341 0.89877 0.76839 0.80786 0.92536 0.92577 0.92117 0.89880 0.90929 0.88850 0.90815 0.90596 0.94479 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.46 19.25 29.55 0.57 -0.89 16 2 C -0.18 -1.46 13.34 -37.12 -0.50 -1.95 16 3 C -0.02 -0.13 4.95 -29.52 -0.15 -0.27 16 4 C 0.06 0.42 5.23 -3.82 -0.02 0.40 16 5 N -0.54 -4.04 4.81 -234.66 -1.13 -5.17 16 6 C 0.06 0.43 5.42 -3.83 -0.02 0.41 16 7 C -0.12 -0.93 5.57 -26.65 -0.15 -1.08 16 8 C 0.15 1.52 2.52 -67.80 -0.17 1.35 16 9 N -0.73 -8.61 5.07 -54.76 -0.28 -8.89 16 10 C 0.60 9.78 7.78 -12.52 -0.10 9.68 16 11 O -0.56 -10.36 14.50 5.28 0.08 -10.28 16 12 C -0.33 -6.02 6.13 -105.07 -0.64 -6.66 16 13 C 0.06 0.99 11.50 -16.98 -0.20 0.79 16 14 N -0.30 -6.34 12.50 30.86 0.39 -5.96 16 15 N -0.31 -7.10 3.56 -57.77 -0.21 -7.31 16 16 C 0.25 6.26 5.97 -5.19 -0.03 6.23 16 17 C -0.54 -14.58 9.39 -34.44 -0.32 -14.90 16 18 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 19 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 20 N -0.89 -24.59 13.29 55.43 0.74 -23.85 16 21 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 C 0.16 3.35 7.01 -81.61 -0.57 2.78 16 26 C -0.09 -1.67 9.57 36.01 0.34 -1.33 16 27 C -0.13 -1.26 5.68 -26.65 -0.15 -1.41 16 28 C 0.05 0.40 4.85 -3.83 -0.02 0.38 16 29 H 0.22 0.79 7.80 -54.09 -0.42 0.37 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.57 6.21 -51.93 -0.32 0.24 16 32 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.47 8.12 -51.93 -0.42 0.05 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 1.01 7.57 -51.93 -0.39 0.62 16 39 H 0.40 3.80 7.56 -40.82 -0.31 3.49 16 40 H 0.18 2.13 7.50 -52.49 -0.39 1.73 16 41 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.06 1.39 7.02 -51.93 -0.36 1.02 16 43 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 44 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 45 H 0.07 1.28 7.05 -51.93 -0.37 0.92 16 46 H 0.09 1.61 6.50 -51.93 -0.34 1.28 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.08 0.60 5.81 -51.93 -0.30 0.29 16 LS Contribution 410.96 15.07 6.19 6.19 Total: -1.00 -31.43 410.96 -9.28 -40.71 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.82 Total: 3.50 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -2.22 Total: -4.76 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -0.49 Total: -51.17 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.43 -9.28 -40.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896520676.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.161 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds