Wall clock time and date at job start Wed Apr 1 2020 03:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47152 * 88.41172 * 3 2 1 5 5 N 1.46904 * 109.47221 * 179.97438 * 4 3 2 6 6 C 1.46849 * 110.99714 * 189.99702 * 5 4 3 7 7 C 1.53040 * 109.51701 * 185.83951 * 6 5 4 8 8 C 1.53117 * 109.27775 * 300.81723 * 7 6 5 9 9 N 1.46506 * 109.52315 * 177.56060 * 8 7 6 10 10 C 1.34773 * 119.99968 * 155.12666 * 9 8 7 11 11 O 1.21602 * 119.99987 * 359.73127 * 10 9 8 12 12 C 1.47436 * 119.99867 * 180.02562 * 10 9 8 13 13 C 1.41286 * 126.41299 * 359.41281 * 12 10 9 14 14 N 1.30448 * 108.02337 * 179.87788 * 13 12 10 15 15 N 1.39938 * 108.89467 * 0.38911 * 14 13 12 16 16 C 1.46503 * 125.75356 * 179.75148 * 15 14 13 17 17 C 1.50696 * 109.46974 * 269.99715 * 16 15 14 18 18 H 1.08001 * 120.00163 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99873 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99984 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00024 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47063 * 90.00165 * 21 19 17 23 23 H 1.48501 * 109.47045 * 210.00089 * 21 19 17 24 24 H 1.48501 * 109.46990 * 330.00178 * 21 19 17 25 25 C 1.34259 * 108.48882 * 359.74809 * 15 14 13 26 26 C 1.50699 * 126.28729 * 179.97438 * 25 15 14 27 27 C 1.53121 * 109.21400 * 57.63068 * 8 7 6 28 28 C 1.46844 * 110.99956 * 314.20740 * 5 4 3 29 29 H 4.44651 * 5.63397 * 180.02562 * 4 1 2 30 30 H 1.08993 * 109.47669 * 328.40794 * 3 2 1 31 31 H 1.09000 * 109.46675 * 208.40350 * 3 2 1 32 32 H 1.09000 * 109.47535 * 59.99263 * 4 3 2 33 33 H 1.09005 * 109.46934 * 299.99881 * 4 3 2 34 34 H 1.08994 * 109.46496 * 65.82676 * 6 5 4 35 35 H 1.08992 * 109.45528 * 305.84562 * 6 5 4 36 36 H 1.08998 * 109.49840 * 180.87931 * 7 6 5 37 37 H 1.08998 * 109.50568 * 60.76392 * 7 6 5 38 38 H 1.08993 * 109.52889 * 297.68928 * 8 7 6 39 39 H 0.97004 * 120.00014 * 335.13517 * 9 8 7 40 40 H 1.08000 * 125.99145 * 0.03887 * 13 12 10 41 41 H 1.09004 * 109.46911 * 29.99927 * 16 15 14 42 42 H 1.09002 * 109.46643 * 149.99548 * 16 15 14 43 43 H 0.96997 * 120.00146 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.47568 * 269.99949 * 26 25 15 45 45 H 1.09002 * 109.47528 * 29.99975 * 26 25 15 46 46 H 1.08998 * 109.46953 * 150.00240 * 26 25 15 47 47 H 1.08998 * 109.50549 * 62.30932 * 27 8 7 48 48 H 1.08996 * 109.50537 * 182.43865 * 27 8 7 49 49 H 1.09005 * 109.46121 * 294.17916 * 28 5 4 50 50 H 1.09001 * 109.46133 * 54.15450 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 -0.0391 -1.4419 5 7 4.6251 -0.0378 -1.4420 6 6 5.1510 0.1629 -2.7982 7 6 6.6741 0.0137 -2.7833 8 6 7.2738 1.0464 -1.8251 9 7 8.7269 0.8702 -1.7621 10 6 9.5172 1.9066 -1.4192 11 8 9.0246 2.9893 -1.1668 12 6 10.9795 1.7293 -1.3565 13 6 11.6916 0.5369 -1.6157 14 7 12.9629 0.7838 -1.4588 15 7 13.1219 2.1239 -1.0884 16 6 14.3972 2.7904 -0.8135 17 6 14.7306 2.6530 0.6497 18 1 14.0595 2.1226 1.3090 19 6 15.8925 3.2044 1.1467 20 7 16.7095 3.8507 0.3440 21 14 16.3054 3.0347 2.9606 22 1 17.0957 1.7957 3.1745 23 1 17.0995 4.2103 3.3996 24 1 15.0494 2.9632 3.7496 25 6 11.9087 2.6956 -1.0276 26 6 11.6153 4.1289 -0.6661 27 6 6.6736 0.8481 -0.4304 28 6 5.1504 0.9716 -0.5139 29 1 -1.0500 0.0002 0.0000 30 1 3.0098 -0.8745 0.5383 31 1 3.0088 0.9048 0.4889 32 1 2.7922 0.8360 -1.9803 33 1 2.7931 -0.9432 -1.9309 34 1 4.8874 1.1617 -3.1459 35 1 4.7199 -0.5805 -3.4685 36 1 7.0656 0.1781 -3.7871 37 1 6.9382 -0.9896 -2.4489 38 1 7.0438 2.0506 -2.1812 39 1 9.1201 0.0075 -1.9674 40 1 11.2595 -0.4120 -1.8971 41 1 15.1842 2.3294 -1.4104 42 1 14.3178 3.8467 -1.0705 43 1 17.5267 4.2390 0.6937 44 1 11.4692 4.2094 0.4111 45 1 12.4527 4.7584 -0.9672 46 1 10.7117 4.4557 -1.1807 47 1 6.9376 -0.1416 -0.0579 48 1 7.0647 1.6084 0.2456 49 1 4.8867 1.9667 -0.8722 50 1 4.7189 0.8155 0.4748 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896520676.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:09 Heat of formation + Delta-G solvation = 60.462023 kcal Electronic energy + Delta-G solvation = -29145.017557 eV Core-core repulsion = 25173.822748 eV Total energy + Delta-G solvation = -3971.194809 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.29865 -40.76631 -39.49079 -36.69765 -35.81319 -34.93523 -33.86089 -32.90100 -32.43515 -31.88181 -29.98642 -29.00088 -28.14099 -25.83710 -25.15785 -24.26962 -23.30202 -22.52531 -21.18445 -21.05062 -20.28718 -18.98864 -18.86002 -18.37433 -17.44611 -16.82759 -16.58543 -16.40582 -16.25876 -16.05374 -15.82909 -15.45294 -15.37656 -14.97235 -14.69484 -14.51432 -14.42372 -14.17543 -14.04676 -13.88185 -13.67886 -13.56508 -13.20935 -13.08126 -12.97230 -12.94772 -12.74384 -12.70331 -12.31364 -12.21949 -12.12875 -11.86231 -11.80971 -11.70613 -11.45583 -11.07996 -10.95125 -10.76574 -10.71537 -10.25297 -10.00181 -9.41042 -9.28856 -8.38056 -6.54524 0.70615 1.34610 1.37177 1.39573 1.48845 1.67316 1.85454 1.92531 2.31637 2.39437 2.58736 2.87869 2.94141 3.61061 3.72644 3.75824 3.85492 3.88711 4.09435 4.12394 4.15804 4.23423 4.25955 4.32554 4.47047 4.50674 4.54384 4.57561 4.62771 4.69208 4.73456 4.79748 4.89796 4.93218 4.97203 5.00981 5.04741 5.08110 5.10466 5.18167 5.22571 5.24158 5.37307 5.48952 5.64274 5.72452 5.74833 6.05601 6.07494 6.10836 6.54641 6.69893 6.71526 6.87609 7.16655 7.42745 8.69811 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020838 B = 0.001825 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.356808 B =15339.988712 C =15988.021737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.217 4.217 3 C -0.017 4.017 4 C 0.067 3.933 5 N -0.539 5.539 6 C 0.060 3.940 7 C -0.114 4.114 8 C 0.148 3.852 9 N -0.710 5.710 10 C 0.606 3.394 11 O -0.585 6.585 12 C -0.330 4.330 13 C 0.080 3.920 14 N -0.337 5.337 15 N -0.339 5.339 16 C 0.267 3.733 17 C -0.557 4.557 18 H 0.052 0.948 19 C 0.025 3.975 20 N -0.916 5.916 21 Si 0.971 3.029 22 H -0.272 1.272 23 H -0.271 1.271 24 H -0.270 1.270 25 C 0.143 3.857 26 C -0.085 4.085 27 C -0.122 4.122 28 C 0.054 3.946 29 H 0.242 0.758 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.034 0.966 33 H 0.086 0.914 34 H 0.033 0.967 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.412 0.588 40 H 0.228 0.772 41 H 0.031 0.969 42 H 0.050 0.950 43 H 0.274 0.726 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.101 0.899 47 H 0.078 0.922 48 H 0.050 0.950 49 H 0.029 0.971 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.413 -8.974 -5.254 30.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.218 4.218 3 C -0.053 4.053 4 C -0.061 4.061 5 N -0.264 5.264 6 C -0.068 4.068 7 C -0.152 4.152 8 C 0.044 3.956 9 N -0.361 5.361 10 C 0.395 3.605 11 O -0.466 6.466 12 C -0.346 4.346 13 C -0.107 4.107 14 N -0.157 5.157 15 N -0.116 5.116 16 C 0.149 3.851 17 C -0.595 4.595 18 H 0.070 0.930 19 C -0.177 4.177 20 N -0.554 5.554 21 Si 0.795 3.205 22 H -0.198 1.198 23 H -0.196 1.196 24 H -0.195 1.195 25 C 0.007 3.993 26 C -0.143 4.143 27 C -0.161 4.161 28 C -0.075 4.075 29 H 0.259 0.741 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.053 0.947 33 H 0.104 0.896 34 H 0.051 0.949 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.249 0.751 40 H 0.244 0.756 41 H 0.049 0.951 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.088 0.912 46 H 0.120 0.880 47 H 0.097 0.903 48 H 0.069 0.931 49 H 0.048 0.952 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -27.054 -9.010 -4.982 28.946 hybrid contribution -0.200 0.949 0.558 1.119 sum -27.253 -8.061 -4.423 28.762 Atomic orbital electron populations 1.25707 0.96940 1.00415 0.99391 1.23504 0.95287 1.01259 1.01745 1.18894 0.84211 1.04322 0.97883 1.21986 0.86658 1.01698 0.95708 1.62060 1.07042 1.48790 1.08503 1.22072 0.94509 1.00668 0.89601 1.21810 0.94597 0.99411 0.99358 1.21001 0.78630 0.99893 0.96106 1.45625 1.06606 1.13402 1.70458 1.17126 0.84616 0.83702 0.75043 1.90672 1.76262 1.27251 1.52442 1.19990 0.93878 0.95047 1.25641 1.24517 0.89593 0.99300 0.97259 1.77092 1.20610 0.94829 1.23125 1.49097 1.07264 1.07266 1.47972 1.19355 0.76996 0.91955 0.96838 1.21401 1.07417 1.37295 0.93345 0.93020 1.25722 0.95056 0.93739 1.03175 1.69993 1.12548 1.35486 1.37404 0.85353 0.78422 0.78260 0.78472 1.19750 1.19596 1.19467 1.21961 0.85246 0.97389 0.94687 1.20532 1.03240 0.87631 1.02932 1.21915 0.94854 1.02447 0.96891 1.22164 0.94344 0.92930 0.98020 0.74149 0.88206 0.89028 0.94737 0.89585 0.94886 0.88529 0.89670 0.89238 0.91888 0.75125 0.75615 0.95063 0.93246 0.91655 0.90053 0.91163 0.88042 0.90343 0.93089 0.95240 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.55 19.25 74.32 1.43 -1.12 16 2 C -0.22 -3.16 13.34 31.12 0.42 -2.74 16 3 C -0.02 -0.20 4.95 28.79 0.14 -0.05 16 4 C 0.07 0.78 5.23 86.30 0.45 1.23 16 5 N -0.54 -6.98 4.81 -896.34 -4.31 -11.29 16 6 C 0.06 0.69 5.42 86.33 0.47 1.16 16 7 C -0.11 -1.38 5.57 30.65 0.17 -1.21 16 8 C 0.15 2.77 2.52 45.07 0.11 2.89 16 9 N -0.71 -15.19 5.07 -445.42 -2.26 -17.45 16 10 C 0.61 18.90 7.78 86.67 0.67 19.57 16 11 O -0.58 -21.61 14.50 -4.04 -0.06 -21.66 16 12 C -0.33 -11.64 6.13 -20.15 -0.12 -11.76 16 13 C 0.08 2.61 11.50 85.65 0.99 3.59 16 14 N -0.34 -14.40 12.50 -56.28 -0.70 -15.10 16 15 N -0.34 -15.70 3.56 -336.70 -1.20 -16.90 16 16 C 0.27 13.89 5.97 85.63 0.51 14.40 16 17 C -0.56 -30.84 9.39 25.60 0.24 -30.60 16 18 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 19 C 0.02 1.33 5.46 84.65 0.46 1.79 16 20 N -0.92 -51.40 13.29 21.45 0.28 -51.11 16 21 Si 0.97 42.78 29.54 68.60 2.03 44.80 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 C 0.14 5.89 7.01 42.14 0.30 6.19 16 26 C -0.09 -3.18 9.57 71.24 0.68 -2.50 16 27 C -0.12 -2.27 5.68 30.65 0.17 -2.09 16 28 C 0.05 0.81 4.85 86.33 0.42 1.23 16 29 H 0.24 1.23 7.80 -4.42 -0.03 1.19 16 30 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.05 6.21 -2.39 -0.01 1.03 16 32 H 0.03 0.43 8.08 -2.39 -0.02 0.41 16 33 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.10 0.84 8.12 -2.39 -0.02 0.82 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 1.48 7.57 -2.39 -0.02 1.46 16 39 H 0.41 6.44 7.56 -92.71 -0.70 5.74 16 40 H 0.23 4.59 7.50 -2.91 -0.02 4.57 16 41 H 0.03 1.75 8.14 -2.38 -0.02 1.73 16 42 H 0.05 2.58 7.02 -2.39 -0.02 2.56 16 43 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 44 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 45 H 0.07 2.59 7.05 -2.39 -0.02 2.57 16 46 H 0.10 3.57 6.50 -2.39 -0.02 3.55 16 47 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.03 0.49 8.14 -2.38 -0.02 0.47 16 50 H 0.09 1.22 5.81 -2.39 -0.01 1.21 16 Total: -1.00 -69.43 410.96 1.53 -67.90 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.24 Total: 20.85 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 7.51 Total: -0.03 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -8.19 Total: -111.86 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.06 Total: -21.66 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -69.43 1.53 -67.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896520676.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.358 kcal (2) G-P(sol) polarization free energy of solvation -69.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds