Wall clock time and date at job start Wed Apr 1 2020 04:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.52331 * 2 1 4 4 C 1.53622 * 109.63285 * 239.91568 * 2 1 3 5 5 N 1.46919 * 108.54195 * 294.86496 * 4 2 1 6 6 C 1.36939 * 120.62955 * 126.37382 * 5 4 2 7 7 H 1.07998 * 119.99737 * 332.12435 * 6 5 4 8 8 C 1.38817 * 119.99995 * 152.12768 * 6 5 4 9 9 N 1.31615 * 120.00149 * 334.90044 * 8 6 5 10 10 Si 1.86804 * 119.99631 * 154.90421 * 8 6 5 11 11 H 1.48496 * 109.47232 * 60.00288 * 10 8 6 12 12 H 1.48505 * 109.46796 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47063 * 299.99550 * 10 8 6 14 14 C 1.46930 * 118.74312 * 306.09280 * 5 4 2 15 15 C 1.53197 * 108.76897 * 53.86075 * 14 5 4 16 16 C 1.53036 * 109.31431 * 305.36520 * 15 14 5 17 17 H 1.08999 * 109.46505 * 301.34476 * 16 15 14 18 18 N 1.46503 * 109.45944 * 181.38486 * 16 15 14 19 19 C 1.34782 * 119.99808 * 84.99999 * 18 16 15 20 20 O 1.21473 * 119.99993 * 0.02562 * 19 18 16 21 21 C 1.48451 * 119.99942 * 180.02562 * 19 18 16 22 22 C 1.39529 * 120.55099 * 180.02562 * 21 19 18 23 23 C 1.38763 * 118.26753 * 180.02562 * 22 21 19 24 24 N 1.32204 * 119.14609 * 359.97438 * 23 22 21 25 25 C 1.31881 * 121.03555 * 359.97438 * 24 23 22 26 26 C 1.50700 * 119.04274 * 179.97438 * 25 24 23 27 27 C 1.53000 * 117.49779 * 8.62658 * 26 25 24 28 28 C 1.52998 * 59.99984 * 252.50748 * 27 26 25 29 29 N 1.31590 * 121.91974 * 359.71835 * 25 24 23 30 30 H 1.08999 * 109.47332 * 299.92034 * 1 2 3 31 31 H 1.09002 * 109.46624 * 59.91836 * 1 2 3 32 32 H 1.08994 * 109.47146 * 179.91648 * 1 2 3 33 33 H 1.09000 * 109.46679 * 180.02562 * 3 2 1 34 34 H 1.08991 * 109.47218 * 300.07934 * 3 2 1 35 35 H 1.09000 * 109.47270 * 60.08301 * 3 2 1 36 36 H 1.08998 * 109.73611 * 175.12906 * 4 2 1 37 37 H 1.08997 * 109.66760 * 54.56020 * 4 2 1 38 38 H 0.97004 * 120.00027 * 354.26445 * 9 8 6 39 39 H 1.08997 * 109.58709 * 173.64896 * 14 5 4 40 40 H 1.09000 * 109.58819 * 293.93988 * 14 5 4 41 41 H 1.09002 * 109.49361 * 65.31906 * 15 14 5 42 42 H 1.09002 * 109.49787 * 185.38125 * 15 14 5 43 43 H 0.96999 * 120.00431 * 265.00487 * 18 16 15 44 44 H 1.08006 * 120.87001 * 0.02562 * 22 21 19 45 45 H 1.08001 * 120.42832 * 180.02562 * 23 22 21 46 46 H 1.08999 * 115.55149 * 154.32939 * 26 25 24 47 47 H 1.08998 * 117.49657 * 359.97438 * 27 26 25 48 48 H 1.09001 * 117.49805 * 145.01482 * 27 26 25 49 49 H 1.08995 * 117.49913 * 252.50992 * 28 27 26 50 50 H 1.08994 * 117.49934 * 107.48914 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4421 0.0000 4 6 2.0462 -0.7253 -1.2520 5 7 1.6515 -2.1381 -1.1695 6 6 0.9639 -2.7314 -2.1945 7 1 0.3270 -2.1369 -2.8327 8 6 1.0856 -4.0968 -2.4130 9 7 2.1668 -4.7332 -2.0153 10 14 -0.2854 -5.0310 -3.2717 11 1 -0.4933 -4.4674 -4.6297 12 1 0.0865 -6.4644 -3.3827 13 1 -1.5389 -4.9038 -2.4856 14 6 2.0140 -2.9040 0.0308 15 6 1.5030 -2.1557 1.2660 16 6 2.0408 -0.7231 1.2484 17 1 3.1305 -0.7443 1.2354 18 7 1.5810 -0.0143 2.4453 19 6 2.2705 -0.1216 3.5985 20 8 3.2733 -0.8056 3.6452 21 6 1.8043 0.5961 4.8115 22 6 2.5094 0.4935 6.0111 23 6 2.0310 1.1839 7.1156 24 7 0.9327 1.9099 6.9951 25 6 0.2907 1.9860 5.8456 26 6 -0.9572 2.8263 5.7589 27 6 -1.2997 3.7087 6.9610 28 6 -2.1253 2.4530 6.6738 29 7 0.7108 1.3534 4.7709 30 1 -0.3634 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0276 -0.0015 33 1 3.1314 1.4410 -0.0005 34 1 1.6774 1.9566 -0.8892 35 1 1.6797 1.9558 0.8907 36 1 3.1327 -0.6515 -1.2984 37 1 1.6089 -0.2752 -2.1432 38 1 2.9134 -4.2366 -1.6452 39 1 1.5553 -3.8918 -0.0138 40 1 3.0978 -3.0064 0.0855 41 1 0.4132 -2.1354 1.2540 42 1 1.8475 -2.6631 2.1672 43 1 0.7804 0.5320 2.4079 44 1 3.4043 -0.1075 6.0783 45 1 2.5496 1.1296 8.0614 46 1 -1.1973 3.2105 4.7675 47 1 -0.6226 3.6810 7.8147 48 1 -1.7650 4.6738 6.7606 49 1 -3.1339 2.5920 6.2845 50 1 -1.9912 1.5996 7.3384 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941075729.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:16 Heat of formation + Delta-G solvation = 58.040408 kcal Electronic energy + Delta-G solvation = -30801.665931 eV Core-core repulsion = 26830.366112 eV Total energy + Delta-G solvation = -3971.299818 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.62222 -40.01949 -38.31025 -37.30818 -34.96908 -34.25548 -33.13638 -32.12899 -31.37434 -29.85698 -26.97375 -26.49146 -25.64696 -25.36684 -24.64062 -22.79933 -22.68663 -21.72965 -20.65982 -20.34676 -18.76051 -18.17571 -17.65087 -17.31064 -16.17684 -15.83511 -15.75447 -15.59998 -15.07273 -14.55583 -14.45729 -14.35927 -14.23046 -13.93952 -13.68964 -13.58181 -13.44895 -12.80478 -12.61847 -12.38041 -12.01315 -11.90259 -11.63977 -11.37054 -11.33283 -11.28868 -11.11532 -10.98561 -10.92372 -10.86807 -10.79021 -10.60088 -10.43164 -10.26220 -10.11820 -9.96470 -9.88191 -9.68118 -9.57416 -9.28186 -8.79297 -8.34787 -6.88385 -6.05925 -3.22256 0.21078 0.54729 2.59450 2.92082 3.27246 3.33377 3.49893 3.53134 3.61211 3.71199 3.82441 4.33168 4.44418 4.49412 4.59378 4.62509 4.63842 4.79574 4.96743 5.13396 5.14287 5.27256 5.29251 5.32170 5.35000 5.46660 5.50607 5.69985 5.75461 5.76322 5.81704 5.89035 5.91392 5.96889 6.07586 6.16259 6.21576 6.30459 6.38934 6.44209 6.49216 6.51981 6.68194 6.71056 6.77356 6.87414 7.07579 7.20048 7.48365 7.68259 8.00654 8.13451 8.58031 9.11492 9.85046 10.29348 11.22685 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016488 B = 0.002609 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.776503 B =10728.106849 C =11139.570648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 C -0.138 4.138 4 C 0.162 3.838 5 N -0.595 5.595 6 C -0.348 4.348 7 H 0.056 0.944 8 C -0.024 4.024 9 N -0.915 5.915 10 Si 1.063 2.937 11 H -0.293 1.293 12 H -0.286 1.286 13 H -0.294 1.294 14 C 0.154 3.846 15 C -0.145 4.145 16 C 0.161 3.839 17 H 0.083 0.917 18 N -0.693 5.693 19 C 0.563 3.437 20 O -0.525 6.525 21 C 0.142 3.858 22 C -0.179 4.179 23 C 0.153 3.847 24 N -0.507 5.507 25 C 0.348 3.652 26 C -0.104 4.104 27 C -0.153 4.153 28 C -0.154 4.154 29 N -0.491 5.491 30 H 0.036 0.964 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.018 0.982 37 H 0.060 0.940 38 H 0.270 0.730 39 H 0.083 0.917 40 H 0.019 0.981 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.407 0.593 44 H 0.162 0.838 45 H 0.178 0.822 46 H 0.132 0.868 47 H 0.110 0.890 48 H 0.101 0.899 49 H 0.105 0.895 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.496 16.649 18.071 24.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 C -0.196 4.196 4 C 0.035 3.965 5 N -0.318 5.318 6 C -0.477 4.477 7 H 0.074 0.926 8 C -0.226 4.226 9 N -0.555 5.555 10 Si 0.893 3.107 11 H -0.220 1.220 12 H -0.212 1.212 13 H -0.221 1.221 14 C 0.027 3.973 15 C -0.185 4.185 16 C 0.058 3.942 17 H 0.101 0.899 18 N -0.344 5.344 19 C 0.346 3.654 20 O -0.400 6.400 21 C -0.006 4.006 22 C -0.202 4.202 23 C -0.014 4.014 24 N -0.221 5.221 25 C 0.081 3.919 26 C -0.124 4.124 27 C -0.190 4.190 28 C -0.192 4.192 29 N -0.207 5.207 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.036 0.964 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.037 0.963 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.244 0.756 44 H 0.179 0.821 45 H 0.195 0.805 46 H 0.149 0.851 47 H 0.128 0.872 48 H 0.120 0.880 49 H 0.123 0.877 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.076 15.138 17.441 23.646 hybrid contribution 1.002 1.299 0.532 1.725 sum -4.074 16.437 17.973 24.695 Atomic orbital electron populations 1.21782 0.94158 1.03138 0.99791 1.21433 0.96700 0.94642 0.96311 1.21816 1.00781 0.95792 1.01173 1.20990 0.95920 0.85972 0.93625 1.44125 1.65654 1.06115 1.15921 1.19934 1.22572 0.94439 1.10786 0.92583 1.25818 1.01071 0.95308 1.00403 1.70778 1.03485 1.39611 1.41624 0.83556 0.75243 0.76346 0.75588 1.22041 1.21157 1.22093 1.20924 0.96579 0.95975 0.83809 1.22523 1.01304 0.94592 1.00104 1.21111 0.99364 0.91759 0.81972 0.89860 1.46208 1.29304 1.49234 1.09626 1.17791 0.83794 0.81263 0.82581 1.90811 1.25111 1.39985 1.84081 1.21825 0.90715 0.93149 0.94897 1.22996 1.02647 1.01176 0.93407 1.23332 0.90541 0.88804 0.98703 1.68042 1.08421 1.18570 1.27068 1.22094 0.94273 0.91840 0.83647 1.20656 0.91433 1.02211 0.98118 1.23034 1.02675 0.94805 0.98508 1.22999 0.95022 0.99840 1.01373 1.68072 1.13170 1.07524 1.31952 0.94462 0.92979 0.90596 0.92980 0.92531 0.93278 0.96384 0.92106 0.91949 0.89916 0.96311 0.91647 0.92676 0.75551 0.82068 0.80537 0.85055 0.87205 0.88050 0.87712 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 7.84 37.16 0.29 -1.81 16 2 C -0.09 -1.46 0.56 -154.16 -0.09 -1.54 16 3 C -0.14 -1.91 8.31 37.16 0.31 -1.60 16 4 C 0.16 3.29 5.24 -3.49 -0.02 3.27 16 5 N -0.60 -14.34 2.28 -172.06 -0.39 -14.73 16 6 C -0.35 -9.41 9.49 -15.06 -0.14 -9.56 16 7 H 0.06 1.52 7.94 -52.49 -0.42 1.10 16 8 C -0.02 -0.66 4.68 -17.43 -0.08 -0.75 16 9 N -0.92 -27.23 12.40 55.49 0.69 -26.54 16 10 Si 1.06 25.01 29.99 -169.99 -5.10 19.91 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.15 3.59 4.69 -3.71 -0.02 3.58 16 15 C -0.15 -2.83 5.31 -26.61 -0.14 -2.97 16 16 C 0.16 2.77 1.57 -67.89 -0.11 2.67 16 17 H 0.08 1.59 7.57 -51.93 -0.39 1.19 16 18 N -0.69 -10.36 4.28 -54.52 -0.23 -10.60 16 19 C 0.56 8.70 7.79 -12.05 -0.09 8.61 16 20 O -0.52 -9.53 16.09 5.39 0.09 -9.44 16 21 C 0.14 1.86 6.79 -82.64 -0.56 1.30 16 22 C -0.18 -1.89 9.72 -38.91 -0.38 -2.27 16 23 C 0.15 1.33 11.31 -17.20 -0.19 1.14 16 24 N -0.51 -5.19 9.32 -10.74 -0.10 -5.29 16 25 C 0.35 3.86 7.31 -157.30 -1.15 2.71 16 26 C -0.10 -0.89 6.23 -91.77 -0.57 -1.47 16 27 C -0.15 -1.02 10.01 -26.73 -0.27 -1.29 16 28 C -0.15 -1.09 10.23 -26.73 -0.27 -1.36 16 29 N -0.49 -6.11 9.60 -7.32 -0.07 -6.18 16 30 H 0.04 0.51 6.58 -51.93 -0.34 0.16 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.43 5.97 -51.93 -0.31 1.12 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.62 7.36 -51.93 -0.38 0.24 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 38 H 0.27 8.10 6.71 -40.82 -0.27 7.83 16 39 H 0.08 2.17 6.29 -51.93 -0.33 1.85 16 40 H 0.02 0.46 7.86 -51.93 -0.41 0.05 16 41 H 0.06 1.28 6.34 -51.93 -0.33 0.95 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.41 5.57 6.05 -40.82 -0.25 5.33 16 44 H 0.16 1.53 7.74 -52.48 -0.41 1.12 16 45 H 0.18 0.84 8.06 -52.49 -0.42 0.41 16 46 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.11 0.81 7.53 -51.93 -0.39 0.42 16 48 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 395.59 15.07 5.96 5.96 Total: -1.00 -31.55 395.59 -10.30 -41.85 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -7.66 Total: 6.41 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -3.49 Total: -1.35 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: -0.11 Total: -63.34 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.10 Total: 19.91 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.55 -10.30 -41.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941075729.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.890 kcal (2) G-P(sol) polarization free energy of solvation -31.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds