Wall clock time and date at job start Wed Apr 1 2020 04:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.52331 * 2 1 4 4 C 1.53622 * 109.63285 * 239.91568 * 2 1 3 5 5 N 1.46919 * 108.54195 * 294.86496 * 4 2 1 6 6 C 1.36939 * 120.62955 * 126.37382 * 5 4 2 7 7 H 1.07998 * 119.99737 * 332.12435 * 6 5 4 8 8 C 1.38817 * 119.99995 * 152.12768 * 6 5 4 9 9 N 1.31615 * 120.00149 * 334.90044 * 8 6 5 10 10 Si 1.86804 * 119.99631 * 154.90421 * 8 6 5 11 11 H 1.48496 * 109.47232 * 60.00288 * 10 8 6 12 12 H 1.48505 * 109.46796 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47063 * 299.99550 * 10 8 6 14 14 C 1.46930 * 118.74312 * 306.09280 * 5 4 2 15 15 C 1.53197 * 108.76897 * 53.86075 * 14 5 4 16 16 C 1.53036 * 109.31431 * 305.36520 * 15 14 5 17 17 H 1.08999 * 109.46505 * 301.34476 * 16 15 14 18 18 N 1.46503 * 109.45944 * 181.38486 * 16 15 14 19 19 C 1.34782 * 119.99808 * 84.99999 * 18 16 15 20 20 O 1.21473 * 119.99993 * 0.02562 * 19 18 16 21 21 C 1.48451 * 119.99942 * 180.02562 * 19 18 16 22 22 C 1.39529 * 120.55099 * 180.02562 * 21 19 18 23 23 C 1.38763 * 118.26753 * 180.02562 * 22 21 19 24 24 N 1.32204 * 119.14609 * 359.97438 * 23 22 21 25 25 C 1.31881 * 121.03555 * 359.97438 * 24 23 22 26 26 C 1.50700 * 119.04274 * 179.97438 * 25 24 23 27 27 C 1.53000 * 117.49779 * 8.62658 * 26 25 24 28 28 C 1.52998 * 59.99984 * 252.50748 * 27 26 25 29 29 N 1.31590 * 121.91974 * 359.71835 * 25 24 23 30 30 H 1.08999 * 109.47332 * 299.92034 * 1 2 3 31 31 H 1.09002 * 109.46624 * 59.91836 * 1 2 3 32 32 H 1.08994 * 109.47146 * 179.91648 * 1 2 3 33 33 H 1.09000 * 109.46679 * 180.02562 * 3 2 1 34 34 H 1.08991 * 109.47218 * 300.07934 * 3 2 1 35 35 H 1.09000 * 109.47270 * 60.08301 * 3 2 1 36 36 H 1.08998 * 109.73611 * 175.12906 * 4 2 1 37 37 H 1.08997 * 109.66760 * 54.56020 * 4 2 1 38 38 H 0.97004 * 120.00027 * 354.26445 * 9 8 6 39 39 H 1.08997 * 109.58709 * 173.64896 * 14 5 4 40 40 H 1.09000 * 109.58819 * 293.93988 * 14 5 4 41 41 H 1.09002 * 109.49361 * 65.31906 * 15 14 5 42 42 H 1.09002 * 109.49787 * 185.38125 * 15 14 5 43 43 H 0.96999 * 120.00431 * 265.00487 * 18 16 15 44 44 H 1.08006 * 120.87001 * 0.02562 * 22 21 19 45 45 H 1.08001 * 120.42832 * 180.02562 * 23 22 21 46 46 H 1.08999 * 115.55149 * 154.32939 * 26 25 24 47 47 H 1.08998 * 117.49657 * 359.97438 * 27 26 25 48 48 H 1.09001 * 117.49805 * 145.01482 * 27 26 25 49 49 H 1.08995 * 117.49913 * 252.50992 * 28 27 26 50 50 H 1.08994 * 117.49934 * 107.48914 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4421 0.0000 4 6 2.0462 -0.7253 -1.2520 5 7 1.6515 -2.1381 -1.1695 6 6 0.9639 -2.7314 -2.1945 7 1 0.3270 -2.1369 -2.8327 8 6 1.0856 -4.0968 -2.4130 9 7 2.1668 -4.7332 -2.0153 10 14 -0.2854 -5.0310 -3.2717 11 1 -0.4933 -4.4674 -4.6297 12 1 0.0865 -6.4644 -3.3827 13 1 -1.5389 -4.9038 -2.4856 14 6 2.0140 -2.9040 0.0308 15 6 1.5030 -2.1557 1.2660 16 6 2.0408 -0.7231 1.2484 17 1 3.1305 -0.7443 1.2354 18 7 1.5810 -0.0143 2.4453 19 6 2.2705 -0.1216 3.5985 20 8 3.2733 -0.8056 3.6452 21 6 1.8043 0.5961 4.8115 22 6 2.5094 0.4935 6.0111 23 6 2.0310 1.1839 7.1156 24 7 0.9327 1.9099 6.9951 25 6 0.2907 1.9860 5.8456 26 6 -0.9572 2.8263 5.7589 27 6 -1.2997 3.7087 6.9610 28 6 -2.1253 2.4530 6.6738 29 7 0.7108 1.3534 4.7709 30 1 -0.3634 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0276 -0.0015 33 1 3.1314 1.4410 -0.0005 34 1 1.6774 1.9566 -0.8892 35 1 1.6797 1.9558 0.8907 36 1 3.1327 -0.6515 -1.2984 37 1 1.6089 -0.2752 -2.1432 38 1 2.9134 -4.2366 -1.6452 39 1 1.5553 -3.8918 -0.0138 40 1 3.0978 -3.0064 0.0855 41 1 0.4132 -2.1354 1.2540 42 1 1.8475 -2.6631 2.1672 43 1 0.7804 0.5320 2.4079 44 1 3.4043 -0.1075 6.0783 45 1 2.5496 1.1296 8.0614 46 1 -1.1973 3.2105 4.7675 47 1 -0.6226 3.6810 7.8147 48 1 -1.7650 4.6738 6.7606 49 1 -3.1339 2.5920 6.2845 50 1 -1.9912 1.5996 7.3384 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941075729.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:15 Heat of formation + Delta-G solvation = 40.036663 kcal Electronic energy + Delta-G solvation = -30802.446632 eV Core-core repulsion = 26830.366112 eV Total energy + Delta-G solvation = -3972.080519 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.49149 -41.34218 -39.71678 -37.94338 -36.69794 -35.24841 -34.47220 -33.23445 -32.91131 -31.61106 -28.25548 -27.75324 -27.24088 -26.22455 -26.07447 -24.22911 -23.21996 -22.77269 -22.42657 -21.47594 -19.99025 -19.47448 -19.11038 -18.63151 -17.21007 -16.93373 -16.69863 -16.59920 -16.15542 -16.08415 -15.87152 -15.60628 -15.33291 -15.31182 -15.22168 -14.98128 -14.86330 -14.33329 -13.97218 -13.60173 -13.25516 -12.95643 -12.81987 -12.70906 -12.59296 -12.49586 -12.40855 -12.34394 -12.10037 -11.99428 -11.93376 -11.91170 -11.84642 -11.69224 -11.60435 -11.49423 -11.37969 -11.16755 -10.49283 -10.45986 -10.39963 -10.16539 -8.93406 -8.23646 -5.38312 -0.70127 -0.20927 1.52439 1.58787 1.66044 1.77125 1.84582 2.48332 2.52599 2.66364 2.86363 3.13941 3.22055 3.39934 3.51813 3.56816 3.62019 3.80662 3.88864 3.91817 3.92274 4.10898 4.13892 4.20645 4.28842 4.43403 4.47183 4.49773 4.55785 4.68163 4.72196 4.79313 4.81042 4.83783 4.92237 4.96794 5.00365 5.07687 5.10773 5.11738 5.16744 5.20664 5.25777 5.28519 5.33108 5.34904 5.57205 5.68194 5.86242 6.30101 6.39155 6.81894 6.94096 7.04348 7.77639 8.23100 9.02016 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016488 B = 0.002609 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.776503 B =10728.106849 C =11139.570648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.078 4.078 3 C -0.130 4.130 4 C 0.158 3.842 5 N -0.608 5.608 6 C -0.346 4.346 7 H 0.057 0.943 8 C -0.078 4.078 9 N -0.946 5.946 10 Si 1.113 2.887 11 H -0.274 1.274 12 H -0.296 1.296 13 H -0.280 1.280 14 C 0.164 3.836 15 C -0.130 4.130 16 C 0.173 3.827 17 H 0.064 0.936 18 N -0.684 5.684 19 C 0.564 3.436 20 O -0.558 6.558 21 C 0.120 3.880 22 C -0.180 4.180 23 C 0.166 3.834 24 N -0.510 5.510 25 C 0.339 3.661 26 C -0.123 4.123 27 C -0.139 4.139 28 C -0.149 4.149 29 N -0.504 5.504 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.011 0.989 37 H 0.062 0.938 38 H 0.253 0.747 39 H 0.048 0.952 40 H -0.002 1.002 41 H 0.067 0.933 42 H 0.050 0.950 43 H 0.416 0.584 44 H 0.169 0.831 45 H 0.220 0.780 46 H 0.137 0.863 47 H 0.103 0.897 48 H 0.121 0.879 49 H 0.121 0.879 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.277 19.349 19.695 28.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.080 4.080 3 C -0.188 4.188 4 C 0.032 3.968 5 N -0.332 5.332 6 C -0.476 4.476 7 H 0.075 0.925 8 C -0.274 4.274 9 N -0.588 5.588 10 Si 0.938 3.062 11 H -0.200 1.200 12 H -0.223 1.223 13 H -0.206 1.206 14 C 0.037 3.963 15 C -0.170 4.170 16 C 0.069 3.931 17 H 0.082 0.918 18 N -0.335 5.335 19 C 0.348 3.652 20 O -0.435 6.435 21 C -0.027 4.027 22 C -0.202 4.202 23 C -0.001 4.001 24 N -0.224 5.224 25 C 0.072 3.928 26 C -0.143 4.143 27 C -0.177 4.177 28 C -0.187 4.187 29 N -0.220 5.220 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.028 0.972 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.016 0.984 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.255 0.745 44 H 0.187 0.813 45 H 0.237 0.763 46 H 0.155 0.845 47 H 0.122 0.878 48 H 0.139 0.861 49 H 0.139 0.861 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.882 17.902 19.072 27.048 hybrid contribution 1.595 0.522 0.115 1.682 sum -5.287 18.424 19.187 27.121 Atomic orbital electron populations 1.21704 0.93199 1.01678 1.01619 1.21270 0.97279 0.95806 0.93624 1.21752 1.00657 0.93573 1.02804 1.21150 0.95595 0.84198 0.95827 1.44284 1.65787 1.07534 1.15559 1.20192 1.21906 0.94668 1.10802 0.92547 1.27155 1.02235 0.96825 1.01224 1.70902 1.04140 1.39558 1.44197 0.82884 0.73097 0.74542 0.75719 1.20013 1.22252 1.20573 1.20668 0.95034 0.95041 0.85555 1.22296 1.01181 0.95863 0.97699 1.20749 0.98105 0.90675 0.83587 0.91788 1.45959 1.29610 1.49012 1.08889 1.18169 0.83124 0.80680 0.83195 1.90791 1.26541 1.41463 1.84721 1.21499 0.92129 0.94515 0.94518 1.23190 1.02659 1.01299 0.93097 1.24024 0.89706 0.86860 0.99541 1.68162 1.08825 1.18744 1.26649 1.22598 0.94976 0.91717 0.83499 1.20814 0.91169 1.03154 0.99179 1.23097 1.01980 0.95476 0.97100 1.23060 0.95380 0.99759 1.00539 1.68018 1.13129 1.08023 1.32873 0.91712 0.92079 0.93623 0.93224 0.90951 0.91556 0.97151 0.91955 0.93754 0.93331 0.98385 0.91418 0.93100 0.74464 0.81341 0.76330 0.84521 0.87825 0.86059 0.86062 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.76 7.84 71.98 0.56 -3.20 16 2 C -0.08 -2.49 0.56 -51.96 -0.03 -2.51 16 3 C -0.13 -3.30 8.31 71.98 0.60 -2.71 16 4 C 0.16 6.46 5.24 86.51 0.45 6.91 16 5 N -0.61 -30.19 2.28 -698.26 -1.59 -31.78 16 6 C -0.35 -19.04 9.49 84.03 0.80 -18.25 16 7 H 0.06 3.06 7.94 -2.91 -0.02 3.04 16 8 C -0.08 -4.47 4.68 84.86 0.40 -4.07 16 9 N -0.95 -58.62 12.40 21.65 0.27 -58.35 16 10 Si 1.11 51.11 29.99 68.60 2.06 53.16 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 13 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 14 C 0.16 8.07 4.69 86.36 0.41 8.48 16 15 C -0.13 -5.24 5.31 30.67 0.16 -5.08 16 16 C 0.17 5.99 1.57 45.02 0.07 6.06 16 17 H 0.06 2.50 7.57 -2.39 -0.02 2.48 16 18 N -0.68 -19.92 4.28 -444.70 -1.90 -21.83 16 19 C 0.56 17.25 7.79 86.97 0.68 17.93 16 20 O -0.56 -20.54 16.09 -3.63 -0.06 -20.60 16 21 C 0.12 3.01 6.79 41.99 0.29 3.30 16 22 C -0.18 -3.49 9.72 22.71 0.22 -3.27 16 23 C 0.17 2.42 11.31 84.76 0.96 3.38 16 24 N -0.51 -9.20 9.32 -187.88 -1.75 -10.95 16 25 C 0.34 6.85 7.31 138.79 1.01 7.87 16 26 C -0.12 -1.84 6.23 -11.54 -0.07 -1.91 16 27 C -0.14 -1.49 10.01 30.59 0.31 -1.18 16 28 C -0.15 -1.75 10.23 30.59 0.31 -1.44 16 29 N -0.50 -11.80 9.60 -177.08 -1.70 -13.50 16 30 H 0.06 1.59 6.58 -2.39 -0.02 1.57 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.04 1.67 5.97 -2.39 -0.01 1.66 16 33 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.07 1.48 7.36 -2.39 -0.02 1.47 16 36 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 38 H 0.25 16.07 6.71 -92.71 -0.62 15.45 16 39 H 0.05 2.71 6.29 -2.39 -0.02 2.69 16 40 H 0.00 -0.10 7.86 -2.39 -0.02 -0.11 16 41 H 0.07 2.69 6.34 -2.39 -0.02 2.68 16 42 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.42 10.66 6.05 -92.71 -0.56 10.10 16 44 H 0.17 2.97 7.74 -2.91 -0.02 2.95 16 45 H 0.22 1.17 8.06 -2.91 -0.02 1.15 16 46 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.10 1.26 7.53 -2.39 -0.02 1.25 16 48 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -71.44 395.59 2.99 -68.45 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.54 Total: 25.06 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 7.12 Total: 10.31 kcal Atomic # 7 Polarization: -129.72 SS G_CDS: -6.68 Total: -136.40 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.06 Total: -20.60 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 2.06 Total: 53.16 kcal Total: -71.44 2.99 -68.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941075729.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.489 kcal (2) G-P(sol) polarization free energy of solvation -71.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds